View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2228_low_2 (Length: 643)
Name: NF2228_low_2
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 161 - 350
Target Start/End: Complemental strand, 22164297 - 22164111
Alignment:
| Q |
161 |
aaaaaatcttcatagtttcttggaatgttatttgtaaatctaaagaagaagaaggattagcagtgaaagatcttccaatggtaaataaagcttctctttt |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22164297 |
aaaaaatcttcatagtttcttggaatgttgtttgtaaatctaaagaagaaggaggattagcagtgaaagatcttccaatggtaaataaagcttctctttt |
22164198 |
T |
|
| Q |
261 |
gcacctctgctggaaactgcttacttcttattagcaatgggctatgatttgcagagccatcttctttaggaatggtaaacctaaaactca |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22164197 |
gcacctctgctggaaactgcttacttcttatt---aatgggctatgatgtgcagagccatcttctttaggaatggtaaacctaaaactca |
22164111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 351 - 492
Target Start/End: Complemental strand, 22164082 - 22163949
Alignment:
| Q |
351 |
ataaagcagtatgttcatgctatctttcaacactcaacttggaccattggaaatggttaacaaggccaattgttgattcttgacatatccttgatcattt |
450 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||||| |
|
|
| T |
22164082 |
ataaagcagtatgttcatactatctttcaacactcaacttggaccatttgaaatggtgaa--------attgttgattcttgacatatcctagagcattt |
22163991 |
T |
|
| Q |
451 |
tcatatttctctcaacattaaagtagcatattatattctaga |
492 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
22163990 |
tcatatttctctcaacattaaagtagcagattatattgtaga |
22163949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 525 - 623
Target Start/End: Complemental strand, 22163837 - 22163739
Alignment:
| Q |
525 |
aagctttgtagatggaattattactaacgagatagcttttgttcacttaagagggactgtaacaaggtttcttggtgcaagctcatatggagccagtat |
623 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
22163837 |
aagctttgtggatggaattattactaacgagatagcttttgttcacttgagagagactgtaacaaggttcctaggtgcaagctcatatggagcaagtat |
22163739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 523
Target Start/End: Complemental strand, 22163894 - 22163863
Alignment:
| Q |
492 |
acaaattatcaacaccaccttgcctttggttt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22163894 |
acaaattatcaacaccaccttgcctttggttt |
22163863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 22164386 - 22164349
Alignment:
| Q |
128 |
ttccatgtttataagtgacctattagtttgcataaaaa |
165 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
22164386 |
ttccatgtttataggtgacctatcagtttgcataaaaa |
22164349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University