View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2228_low_20 (Length: 245)

Name: NF2228_low_20
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2228_low_20
NF2228_low_20
[»] chr6 (11 HSPs)
chr6 (20-198)||(27878725-27878903)
chr6 (20-195)||(1234827-1235002)
chr6 (20-198)||(26976147-26976325)
chr6 (20-198)||(27874006-27874184)
chr6 (20-190)||(18968007-18968178)
chr6 (20-198)||(30986631-30986813)
chr6 (50-198)||(30966775-30966923)
chr6 (28-195)||(21966677-21966841)
chr6 (23-172)||(23012520-23012667)
chr6 (190-232)||(27878277-27878319)
chr6 (20-55)||(30967674-30967709)
[»] chr4 (15 HSPs)
chr4 (20-198)||(42266026-42266204)
chr4 (20-198)||(42270745-42270923)
chr4 (20-195)||(48701837-48702012)
chr4 (20-198)||(24520041-24520219)
chr4 (20-195)||(48697147-48697323)
chr4 (20-198)||(30945493-30945670)
chr4 (20-198)||(30950199-30950376)
chr4 (20-190)||(10427410-10427581)
chr4 (22-188)||(48782872-48783026)
chr4 (57-155)||(17248015-17248112)
chr4 (190-231)||(30949751-30949792)
chr4 (190-232)||(42266610-42266652)
chr4 (190-232)||(48701389-48701431)
chr4 (128-174)||(1979329-1979375)
chr4 (70-108)||(1979567-1979604)
[»] chr3 (10 HSPs)
chr3 (20-198)||(5823291-5823469)
chr3 (20-198)||(5818529-5818707)
chr3 (20-198)||(54546007-54546184)
chr3 (20-196)||(2817279-2817454)
chr3 (23-157)||(24659155-24659287)
chr3 (20-118)||(4579254-4579352)
chr3 (20-190)||(31204783-31204950)
chr3 (42-198)||(35977104-35977258)
chr3 (190-232)||(2816831-2816873)
chr3 (190-232)||(5822843-5822885)
[»] chr8 (4 HSPs)
chr8 (20-195)||(9439388-9439563)
chr8 (20-195)||(9444108-9444283)
chr8 (21-77)||(4799315-4799371)
chr8 (190-232)||(9443660-9443702)
[»] chr5 (7 HSPs)
chr5 (23-198)||(34352371-34352546)
chr5 (20-195)||(41718536-41718711)
chr5 (20-195)||(41723262-41723437)
chr5 (20-198)||(34360079-34360257)
chr5 (20-198)||(29585316-29585494)
chr5 (190-232)||(41719117-41719159)
chr5 (190-232)||(34352720-34352762)
[»] chr2 (14 HSPs)
chr2 (20-195)||(5198671-5198846)
chr2 (23-198)||(15603000-15603175)
chr2 (20-167)||(825632-825780)
chr2 (20-167)||(830288-830436)
chr2 (22-190)||(30396929-30397096)
chr2 (20-198)||(28715885-28716061)
chr2 (20-164)||(31592926-31593068)
chr2 (73-198)||(13843865-13843988)
chr2 (20-198)||(13840256-13840428)
chr2 (24-139)||(12175768-12175881)
chr2 (190-232)||(826186-826228)
chr2 (99-198)||(8004194-8004292)
chr2 (65-174)||(42117769-42117876)
chr2 (24-68)||(9358163-9358207)
[»] chr7 (6 HSPs)
chr7 (20-190)||(16183647-16183818)
chr7 (20-190)||(8139980-8140149)
chr7 (22-190)||(8138478-8138645)
chr7 (22-198)||(30235144-30235321)
chr7 (20-162)||(5102609-5102749)
chr7 (34-119)||(36528445-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (20-190)||(27242-27413)
[»] chr1 (3 HSPs)
chr1 (20-190)||(30697131-30697300)
chr1 (20-190)||(46191361-46191530)
chr1 (20-190)||(4130215-4130385)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 27878725 - 27878903
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878725 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 27878824  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878825 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 27878903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 1235002 - 1234827
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235002 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 1234903  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1234902 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 1234827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 26976147 - 26976325
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976147 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 26976246  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26976247 caaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatta 26976325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 27874006 - 27874184
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27874006 aacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaagggaaaaaac 27874105  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874106 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 27874184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 18968178 - 18968007
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  18968178 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaataaggggaaaaaac 18968079  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  18968078 cacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag 18968007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 30986813 - 30986631
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaacaaataaggggaaaa 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||  ||||    
T  30986813 aacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaacaaataaggaaaaaa 30986715  T
Q  117 aa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  30986714 aaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatta 30986631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 30966923 - 30966775
Alignment:
Q  50 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 148  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  149 agtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaatta 30966775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 21966841 - 21966677
Alignment:
Q  28 attatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggc 127  Q
    ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |||||||| | | |||||    
T  21966841 attatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataaagggaaaaatc-atggggc 21966745  T
Q  128 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    |||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966744 aagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca 23012617  T
Q  122 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 172  Q
      |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012618 -tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 27878277 - 27878319
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  27878277 gtacaattttattagtgtatcccagatctcctttgctgtcttc 27878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 30967709 - 30967674
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacga 55  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30967709 aacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 42266204 - 42266026
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266204 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 42266105  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266104 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 42266026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 42270923 - 42270745
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270923 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 42270824  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270823 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 42270745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 48701837 - 48702012
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701837 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 48701936  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48701937 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 48702012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 24520041 - 24520219
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520041 aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 24520140  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24520141 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatta 24520219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 48697147 - 48697323
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg-aaaaaa 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48697147 aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaa 48697246  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48697247 ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 48697323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 30945493 - 30945670
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  30945493 aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaat 30945591  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30945592 cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaatta 30945670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 30950199 - 30950376
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30950199 aacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaac 30950297  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30950298 cacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaatta 30950376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 10427581 - 10427410
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10427581 aacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaac 10427482  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
     |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  10427481 tacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag 10427410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 48783026 - 48782872
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    ||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   |||||||||||| ||||||||  ||    
T  48783026 caaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaaa--ca 48782930  T
Q  122 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggag 188  Q
     |||         |||||||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  48782929 tggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatggag 48782872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  57 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 155  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 30949751 - 30949792
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtctt 231  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  30949751 gtacaattttattagagtatcccagatctcctttgctgtctt 30949792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 42266652 - 42266610
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  42266652 gtacaattttattagtgtatcccagatctcctttgctgtcttc 42266610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 48701389 - 48701431
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  48701389 gtacaattttattagtgtatcccagatctcctttgctgtcttc 48701431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 1979375 - 1979329
Alignment:
Q  128 aagagtagagaactttcactaagtggaagaaattacaggacctctct 174  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||    
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct 1979329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  70 aacacacaatattttacgtggaaacccctcaacaaataa 108  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5823291 - 5823469
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823291 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 5823390  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5823391 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatta 5823469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5818529 - 5818707
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5818529 aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaataaggggaaaaaac 5818628  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5818629 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatta 5818707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 54546184 - 54546007
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54546184 aacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaataaggggaaaaaac 54546086  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  54546085 cacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaatta 54546007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 2817279 - 2817454
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2817279 aacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaac 2817377  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaat 196  Q
    ||| ||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  2817378 cacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaat 2817454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 24659155 - 24659287
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 122  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24659155 aaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaataaggggaaaaaaccac 24659254  T
Q  123 ggggcaagagtagagaactttcactaagtggaaga 157  Q
    |||||||||||  ||||||||||||||||||||||    
T  24659255 ggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 4579352 - 4579254
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579352 aacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 31204783 - 31204950
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||     
T  31204783 aacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaaat 31204880  T
Q  120 cacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204881 cacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 35977258 - 35977104
Alignment:
Q  42 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 140  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  141 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaatta 35977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 2816831 - 2816873
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  2816831 gtacaattttattaaagtatcccagatctcctttgctgtcttc 2816873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 5822843 - 5822885
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  5822843 gtacaattttattagtgtatcccagatctcctttgctgtcttc 5822885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 9439388 - 9439563
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439388 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 9439487  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9439488 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 9439563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 9444108 - 9444283
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444108 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 9444207  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9444208 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 9444283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  21 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 77  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 9443660 - 9443702
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  9443660 gtacaattttattagtgtatcccagatctcctttgctgtcttc 9443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 34352546 - 34352371
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  123 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatta 34352371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 41718711 - 41718536
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718711 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 41718612  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41718611 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 41718536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 41723437 - 41723262
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723437 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 41723338  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41723337 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 41723262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 34360257 - 34360079
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34360257 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaac 34360158  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34360157 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatta 34360079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 29585316 - 29585494
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585316 aacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 29585415  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  29585416 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaatta 29585494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 41719159 - 41719117
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  41719159 gtacaattttattagtgtatcccagatctcctttgctgtcttc 41719117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 34352762 - 34352720
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||    
T  34352762 gtacaattttattagagtatcccaaatctcctttgccgtcttc 34352720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 5198671 - 5198846
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198671 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 5198770  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5198771 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa 5198846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 15603175 - 15603000
Alignment:
Q  23 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 122  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603175 aaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 15603076  T
Q  123 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||    
T  15603075 ggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaatta 15603000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 825780 - 825632
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  825780 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaa 825681  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  825680 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 830436 - 830288
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  830436 aacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaa 830337  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaattacagga 167  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830336 ccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 30396929 - 30397096
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||    
T  30396929 caaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataagggaaaaaaatca 30397026  T
Q  122 cggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    | |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  30397027 cagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag 30397096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 28716061 - 28715885
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||| |    
T  28716061 aacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataaggggaaaaa-c 28715964  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    |||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  28715963 cacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaatta 28715885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 31592926 - 31593068
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |||||| |  |||||||    
T  31592926 aacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaaaac 31593024  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattaca 164  Q
    |||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593025 cac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 13843865 - 13843988
Alignment:
Q  73 acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 172  Q
    ||||||||||| |||||||||||||||||||||||||| | |||||  |  ||  || |||| |||| ||||| ||||||||||||||||||||||| ||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggag-aaaaattataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct 13843962  T
Q  173 ctctaaatacaaggagagtacaatta 198  Q
     | |||||||||| ||| || |||||    
T  13843963 ttataaatacaagaagaataaaatta 13843988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 13840256 - 13840428
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  |||||||||| |||||| ||||      
T  13840256 aacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaagggggaaaa-- 13840350  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| ||||||||||||||||    
T  13840351 catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaatta 13840428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  24 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 123  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  124 gggcaagagtagagaa 139  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 826228 - 826186
Alignment:
Q  190 gtacaattatattagagtatcccagatctcctttgctgtcttc 232  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  826228 gtacaattttattagtgtatcccagatctcctttgctgtcttc 826186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 8004292 - 8004194
Alignment:
Q  99 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 198  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  65 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 164  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  165 ggacctctct 174  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 9358163 - 9358207
Alignment:
Q  24 aaatattatcacgcagctaaaataagagacgagaaaagaggaact 68  Q
    ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358163 aaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 16183647 - 16183818
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183647 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 16183746  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  16183747 cacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagag 16183818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 8139980 - 8140149
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| |||||    
T  8139980 aacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatattt-atgtggaaacccctcaacaaataaggggagaaaac 8140078  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    || |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||    
T  8140079 catggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagag 8140149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 8138478 - 8138645
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 121  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||||| ||||||| |||||||    
T  8138478 caaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaaggggagaaaacca 8138576  T
Q  122 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    || ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138577 cgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 30235321 - 30235144
Alignment:
Q  22 caaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg-aaaaaacc 120  Q
    ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  30235321 caaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacgaataaggggaaaaaaacc 30235223  T
Q  121 acggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaatta 198  Q
    |||||  ||||||||| |||||||| ||| | |||||||||||||||||||||| |||  || ||||||||||||||||    
T  30235222 acgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaatta 30235144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 5102609 - 5102749
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 118  Q
    |||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||||     
T  5102609 aacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaaaa- 5102705  T
Q  119 ccacggggcaagagtagagaactttcactaagtggaagaaatta 162  Q
    ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102706 ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 36528445 - 36528529
Alignment:
Q  34 acgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |||||||  |||||||    
T  36528445 acgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataaggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 27242 - 27413
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27242 aacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaataaggggaaaaaac 27341  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||    
T  27342 cacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagag 27413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 30697131 - 30697300
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| |    
T  30697131 aacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataaggggaaaaagc 30697229  T
Q  120 cacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 190  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697230 cacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 46191530 - 46191361
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  46191530 aacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaataaggggaaaaaac 46191433  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  46191432 cacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagag 46191361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 4130385 - 4130215
Alignment:
Q  20 aacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaac 119  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||    
T  4130385 aacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaataaagggaaaaaac 4130287  T
Q  120 cacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 190  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130286 cacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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