View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_25 (Length: 236)
Name: NF2228_low_25
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2291479 - 2291260
Alignment:
| Q |
1 |
ttaaatttgaatcaataacccaatcaaagttaaacatcacaaagaatcaaccatatagcaaacaacatgtaaaaatgaaagggaagaattcaatatctcc |
100 |
Q |
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| T |
2291479 |
ttaaatttgaatcaataacccaatcaaagttaaacatcacaaagaatcaaccatatagcaaacaacatgtaaaaatgaaagggaagaattcaatatctca |
2291380 |
T |
|
| Q |
101 |
taatcaattaaaagataaatcaaacatgttacatagtttgaatagaaatttaaacaataatcacaaagtgctaaattttctctttaaactaatagaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2291379 |
taatcaattaaaagataaatcaaacatgttacatagtttgaatagaaatttaaacaataatcacaaagtgctaaattttctctttaaactaatagaaata |
2291280 |
T |
|
| Q |
201 |
acaaagttcagaaatttata |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2291279 |
acaaagttcagaaatttata |
2291260 |
T |
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