View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_3 (Length: 616)
Name: NF2228_low_3
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 206 - 612
Target Start/End: Original strand, 7375290 - 7375717
Alignment:
| Q |
206 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
305 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7375290 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7375389 |
T |
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| Q |
306 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
384 |
Q |
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| T |
7375390 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7375489 |
T |
|
| Q |
385 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
484 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7375490 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7375589 |
T |
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| Q |
485 |
tctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacat |
584 |
Q |
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| T |
7375590 |
tcttacacaaagagtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacat |
7375689 |
T |
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| Q |
585 |
aatggttgcatttgatgacttttgcttt |
612 |
Q |
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| T |
7375690 |
aatggttgcatttgatgacttttgcttt |
7375717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 206 - 612
Target Start/End: Complemental strand, 7278549 - 7278122
Alignment:
| Q |
206 |
tgaaaaatttgaagctttggggaatgaggagagcaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggag |
305 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7278549 |
tgaaaaatttgaagctttggggaatgaggagaacaatgaggatgtgaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggag |
7278450 |
T |
|
| Q |
306 |
gaaggaattgaggaaagtgtggatgtgaaagaaga---------------aaatggatttgaggaggttaagg------aggaagaagatggagggaata |
384 |
Q |
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| T |
7278449 |
gaaggaattaaggaaagtgtagatgtgaaagaagaggagggtagaattggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaata |
7278350 |
T |
|
| Q |
385 |
gaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatggaaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatc |
484 |
Q |
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| T |
7278349 |
gaaaaatgttgaaaaggatgatggaggacaatgagaagatgatggaaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatc |
7278250 |
T |
|
| Q |
485 |
tctcacacaaagggtggagcagcttgagagagcttttacttttgacaagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacat |
584 |
Q |
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||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7278249 |
tcttacacaaagagtggagcagcttgagagagcatttacttttgacaagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacat |
7278150 |
T |
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| Q |
585 |
aatggttgcatttgatgacttttgcttt |
612 |
Q |
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| T |
7278149 |
aatggttgcatttgatgacttttgcttt |
7278122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 7278750 - 7278608
Alignment:
| Q |
8 |
agagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaa---agaatataattttttgatgaaggag |
104 |
Q |
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| T |
7278750 |
agagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggag |
7278651 |
T |
|
| Q |
105 |
gggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278650 |
gggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
7278608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 7375089 - 7375231
Alignment:
| Q |
8 |
agagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggag |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
7375089 |
agagaagaatgagggaggtgaaaaaatgggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggag |
7375188 |
T |
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| Q |
105 |
gggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375189 |
gggggtggtgaagatgaggaaggtgacaaagtggaagctttat |
7375231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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