View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_4 (Length: 511)
Name: NF2228_low_4
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 12565985 - 12565486
Alignment:
| Q |
19 |
ccttggaggtcgagaattcgaccttcatcctcaggataatgctaaaattactaacatttgtaattcaaaagaaataccagcatgtgaaaacata------ |
112 |
Q |
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| T |
12565985 |
ccttggaggtcgagagttcgaccttcatcctcaggataatgctaaaattactaacatttgtaattcaaaagaaataccagcatgtgaaaacatagaaaaa |
12565886 |
T |
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| Q |
113 |
---cga----gagctagcagctaacatttgagtaaaataagctaatgatcaaatgttgagtaaaatgtagaagggagtactctgaacttttacctgtgtt |
205 |
Q |
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| T |
12565885 |
agccgatgttgagtaaattactaaccttcgagtgaaataagttaatgaccaaatgttgagtaaaatgtagaagggagtactctgaacttttacctgtgtt |
12565786 |
T |
|
| Q |
206 |
tgattaaatgatggtaaaacgagaaaaaagccgatgctacagacaaattttctatagcttagtctgattcgaaaggaaaatcatcaattgattcaaaaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
12565785 |
tgattaaatgatggtaaaacgagaaaaaagccgatgctacgatcaaattttctatatcttagtctgattcgaaaggaaaatcagcaattcattcaaaaga |
12565686 |
T |
|
| Q |
306 |
gtattgcattttttgccttccaaaattgaagcaagctttgcattaaagagtcatagtcattcatgaacattccataactactctattgcatctaaagtgt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12565685 |
gtattgcattttttgccttccaaaattgaagcaagctttacattaaaaagtcatagtcattcatgaacatttcataactactctattgcatctaaagtgt |
12565586 |
T |
|
| Q |
406 |
tgactagtgttgaatgaaagacatgtgatgtgtatttatgcaattactattggagtaaatatgagatctatagtaaaaatgtcatttggtttcatctcac |
505 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12565585 |
tgactagtgttgaatggaaggcatgtgatgtgtatttatgcaattactattggagtaaatatgagatctatagtaaaaatgtcatttggtttcatatcac |
12565486 |
T |
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