View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2228_low_5 (Length: 500)

Name: NF2228_low_5
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2228_low_5
NF2228_low_5
[»] chr1 (10 HSPs)
chr1 (25-405)||(15379047-15379433)
chr1 (21-155)||(31584926-31585060)
chr1 (21-155)||(25293738-25293872)
chr1 (21-155)||(29677298-29677432)
chr1 (22-155)||(48378772-48378905)
chr1 (25-116)||(2191517-2191608)
chr1 (21-155)||(11894567-11894701)
chr1 (21-155)||(47141094-47141228)
chr1 (25-153)||(25987659-25987787)
chr1 (25-93)||(38264077-38264145)
[»] chr8 (8 HSPs)
chr8 (25-160)||(28211598-28211733)
chr8 (21-155)||(8226929-8227063)
chr8 (24-155)||(36582620-36582751)
chr8 (21-115)||(7986931-7987025)
chr8 (24-115)||(7968190-7968281)
chr8 (60-149)||(31006379-31006468)
chr8 (21-151)||(9762619-9762749)
chr8 (40-149)||(6870295-6870404)
[»] chr2 (8 HSPs)
chr2 (25-155)||(42622357-42622487)
chr2 (25-155)||(5110520-5110650)
chr2 (25-155)||(5704909-5705039)
chr2 (24-115)||(13626041-13626132)
chr2 (21-120)||(31575664-31575763)
chr2 (27-115)||(45150967-45151055)
chr2 (21-148)||(5938985-5939112)
chr2 (21-80)||(13807853-13807912)
[»] scaffold0115 (1 HSPs)
scaffold0115 (21-155)||(22282-22416)
[»] chr5 (11 HSPs)
chr5 (25-155)||(35188312-35188442)
chr5 (21-155)||(39800133-39800267)
chr5 (25-155)||(39206821-39206951)
chr5 (25-148)||(23429547-23429670)
chr5 (25-155)||(40057163-40057293)
chr5 (23-149)||(39886976-39887102)
chr5 (21-120)||(3926502-3926601)
chr5 (21-148)||(42878646-42878773)
chr5 (25-155)||(42837821-42837950)
chr5 (40-78)||(2209879-2209917)
chr5 (25-155)||(33742404-33742533)
[»] chr4 (12 HSPs)
chr4 (25-160)||(36464484-36464619)
chr4 (40-155)||(40568625-40568740)
chr4 (21-154)||(22279311-22279443)
chr4 (21-155)||(8818979-8819113)
chr4 (22-155)||(41041747-41041880)
chr4 (40-155)||(33340926-33341041)
chr4 (24-155)||(19842041-19842172)
chr4 (41-108)||(29117334-29117401)
chr4 (25-115)||(38951934-38952024)
chr4 (27-115)||(42555651-42555739)
chr4 (49-91)||(43624679-43624721)
chr4 (55-115)||(23627206-23627266)
[»] scaffold0634 (1 HSPs)
scaffold0634 (21-155)||(8959-9093)
[»] chr7 (12 HSPs)
chr7 (21-155)||(33189626-33189760)
chr7 (25-148)||(11038881-11039004)
chr7 (40-151)||(1052752-1052863)
chr7 (21-160)||(2943735-2943873)
chr7 (21-148)||(7767302-7767429)
chr7 (21-113)||(23809405-23809497)
chr7 (28-152)||(38440103-38440226)
chr7 (40-115)||(30541215-30541290)
chr7 (21-152)||(36299110-36299241)
chr7 (25-136)||(27337309-27337420)
chr7 (54-155)||(47925175-47925276)
chr7 (21-115)||(5973296-5973390)
[»] chr6 (7 HSPs)
chr6 (21-155)||(7622610-7622744)
chr6 (55-152)||(641721-641818)
chr6 (40-115)||(35167015-35167090)
chr6 (26-155)||(10788789-10788917)
chr6 (27-112)||(28582478-28582563)
chr6 (42-155)||(10408630-10408743)
chr6 (21-102)||(8577046-8577127)
[»] chr3 (9 HSPs)
chr3 (21-155)||(12149292-12149426)
chr3 (21-155)||(25874390-25874526)
chr3 (29-155)||(27926322-27926448)
chr3 (21-152)||(21288398-21288530)
chr3 (21-148)||(13826359-13826486)
chr3 (21-155)||(3778666-3778800)
chr3 (21-115)||(5295521-5295615)
chr3 (60-155)||(48251176-48251271)
chr3 (21-86)||(36585032-36585097)
[»] scaffold0155 (1 HSPs)
scaffold0155 (21-152)||(6637-6768)
[»] scaffold0057 (1 HSPs)
scaffold0057 (40-155)||(66865-66980)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 25 - 405
Target Start/End: Original strand, 15379047 - 15379433
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattc------attaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaat 118  Q
    ||||||||||||| |||||||||||||||||||| |      ||||||||||||| |||||| |||||||||||| |  |||||||||||||||||||||    
T  15379047 gcgggtgtggatactattaaatctgcatccgtatccgtatccattaattagcgggcagttaaaatatccgtttatttgatccatggatatccattaaaat 15379146  T
Q  119 atatgttccgtgtccgtgaaggattttatccgcggatgcggannnnnnngcgatccctatatgagtgatatgatagttacacggctaatggaattaggga 218  Q
    ||||| || |||||| ||| ||||||||||||||| ||| ||       || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15379147 atatgctcggtgtccatgacggattttatccgcgggtgcagatttttttgccatccctatatgagtgatatgatagttacacggctaatggaattaggga 15379246  T
Q  219 tgcaatgaacaaaccaataaccaggtgaatttgaaaatttagtcccaccaattaaaacagtttcattttcttctacgttcggggtcaaaaccgaactaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  15379247 tgcaatgaacaaaccaataaccaggtgaatttgaaaattctgtcccaccaattaaaacaatttcgttttcttctacgttcggggtcaaaaccgaactaaa 15379346  T
Q  319 ccaaacgaacccgacctttgttgcttcagctatcgaattcacatcatttaaattcgatcacccagactcaaaccaacctattatata 405  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  15379347 ccaaacgaacccgacctttgttgcttcggctatcggattcacttcatttaaatttgatcacccagactcaaaccaacctattatata 15379433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 31585060 - 31584926
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| | | || ||||| || ||||||||||||||||||  |||    
T  31585060 atccgcgggtgtggatatcattaaatccgcatccgtatccattaattagcgggtagttaaaaaacccatttattttatccatggatatccattaaggtat 31584961  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      ||||||||||| ||  |||||||||| ||||||    
T  31584960 ccgttccgtgtccatggcggattttatctgcggat 31584926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 25293872 - 25293738
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||  ||||||||||||||  |||    
T  25293872 atccgcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatctgtggatatccattaaggtat 25293773  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  25293772 ccgctccgtgtccgtggcggattttatccgcggat 25293738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 29677432 - 29677298
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  |||||||| |||||||||| |||||||| |||||||||||| | |||| ||||| || ||||||||||||||||||  |||    
T  29677432 atccgcgggtgtggataccattaaatccgcatccgtatccattaatttgcgggtagttaaaaaatccatttattttatccatggatatccattaaggtat 29677333  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | |||||||||||    ||||||||||||||||    
T  29677332 cagctccgtgtccgttgcagattttatccgcggat 29677298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 48378905 - 48378772
Alignment:
Q  22 tccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatata 121  Q
    |||||||| ||| |||| |||||||| ||||  |||| ||||||||||||||||||||| | |||||||||| || ||||||||||| ||||||  |||     
T  48378905 tccgcgggcgtgaatatcattaaatccgcatatgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatattcattaagctatc 48378806  T
Q  122 tgttccgtgtccgtgaaggattttatccgcggat 155  Q
     | |||||| |||||| |||||||||||||||||    
T  48378805 cgctccgtgcccgtgatggattttatccgcggat 48378772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 2191608 - 2191517
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaa 116  Q
    ||||||| |||||  |||||||||||||| |||| ||||||||| | ||||| ||| |||||||||||| || |||||||||||||||||||    
T  2191608 gcgggtgcggataccattaaatctgcatctgtatccattaattaacaggtagataaaatatccgtttattttatccatggatatccattaaa 2191517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 11894567 - 11894701
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||| ||||||||||||   ||||||| |||||| ||| ||||||||||| ||||||||| | || | ||||| || ||||| ||||||||||||  |||    
T  11894567 atccacgggtgtggataccgttaaatccgcatccatatccattaattagcaggtagttaaaaaattcatttattttatccattgatatccattaaggtat 11894666  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | |||||| |||||| ||||| |||||||||||    
T  11894667 ccgctccgtgcccgtgacggattatatccgcggat 11894701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 47141094 - 47141228
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||  ||||  ||||||| || || | ||| ||||||||| |||||||| || | ||||| |||| || ||||||||||||||||||  |||    
T  47141094 atccgcgggtgctgataccattaaatatgtattcctatccattaattaacgggtagtaaaaaaatccgcttattttatccatggatatccattaaggtat 47141193  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  47141194 ccgctccgtgtccgtggcggattttatccgcggat 47141228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 25987659 - 25987787
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  ||||||||  |||  |||| ||||||||||||||||||||| | || | ||||| || ||||| ||||||||||||  ||| ||     
T  25987659 gcgggtgtggataccattaaatccacatttgtatccattaattagcgggtagttaaaaaattcatttattttatccatagatatccattaaggtatctgc 25987758  T
Q  125 tccgtgtccgtgaaggattttatccgcgg 153  Q
    | |||| | |||| ||||| |||||||||    
T  25987759 ttcgtgcctgtgacggattatatccgcgg 25987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 38264145 - 38264077
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttat 93  Q
    ||||||| |||||  |||||||   ||||| ||| ||||||||||||||||||||| |||||| |||||    
T  38264145 gcgggtgcggataccattaaattcacatccatatccattaattagcgggtagttaaaatatccatttat 38264077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 28211733 - 28211598
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||||||||| ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||||| || ||||| ||||||||||||| ||| ||     
T  28211733 gcgggtgtggatactattaaatccgcattcgtatccattaattagtgggtagttaaaatatccgtttattttatccatagatatccattaaagtatctgc 28211634  T
Q  125 tccgtgtccgtgaaggattttatccgcggatgcgga 160  Q
    || |||||||||  ||||||||||||||| ||||||    
T  28211633 tctgtgtccgtggcggattttatccgcgggtgcgga 28211598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 8227063 - 8226929
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  |||||||| ||||||||||  |||||||||||||||||||| | |||||||||| || |||||| |||||||||||  |||    
T  8227063 atccgcgggtgtggataccattaaatccgcatccgtatctattaattagcgggtagttaaaagatccgtttattttatccatgtatatccattaaggtat 8226964  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
        |||||| |||||| |||||||||||||||||    
T  8226963 ccactccgtgcccgtgacggattttatccgcggat 8226929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 36582751 - 36582620
Alignment:
Q  24 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatg 123  Q
    |||||||||| ||| ||||||||| |||||||||| |||||||||| || ||||||| | |||||||||| || | |||||||||||||||| ||||  |    
T  36582751 cgcgggtgtgtatactattaaatccgcatccgtatccattaattagtggatagttaaaaaatccgtttattttattcatggatatccattaagatatccg 36582652  T
Q  124 ttccgtgtccgtgaaggattttatccgcggat 155  Q
     ||||||| ||||  |||||||||||||||||    
T  36582651 ctccgtgttcgtggcggattttatccgcggat 36582620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 7987025 - 7986931
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    ||||||||||||| |||  |||||||| |||||||||| ||||||||||| ||||||| | | |||||||||| || ||||||||||||||||||    
T  7987025 atccgcgggtgtgaataccattaaatccgcatccgtatccattaattagcaggtagttgacaaatccgtttattttatccatggatatccattaa 7986931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 7968281 - 7968190
Alignment:
Q  24 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    |||||||||| |||  |||||||| |||| ||||| ||||||||||||||||||| | | |||||||||| || ||||||||||||||||||    
T  7968281 cgcgggtgtgaataccattaaatccgcatgcgtatccattaattagcgggtagttgaaaaatccgtttattttatccatggatatccattaa 7968190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 31006379 - 31006468
Alignment:
Q  60 cattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatcc 149  Q
    ||||||||||||| ||||||| |||||||||||| || |||||||||||||||||| ||||  | ||| ||||||||  |||||||||||    
T  31006379 cattaattagcggatagttaaaatatccgtttattttatccatggatatccattaagatatccgctccatgtccgtggcggattttatcc 31006468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 9762749 - 9762619
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||| || ||||||||  || ||||| |||||| ||| ||||||||||| ||||||||| | ||| |||||| || ||||||||||||||||||  |||    
T  9762749 atccgaggatgtggataccatcaaatccgcatccatatccattaattagcaggtagttaaaaaatctgtttattttatccatggatatccattaaggtat 9762650  T
Q  121 atgttccgtgtccgtgaaggattttatccgc 151  Q
      | |||||| |||||  |||||||||||||    
T  9762649 ccgctccgtgcccgtggcggattttatccgc 9762619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 6870404 - 6870295
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 139  Q
    |||||||||||||  ||||  |||||||| |||||||||||  |||  |||||| || |||||||||||||||||| ||||  |||| || ||| |||||    
T  6870404 attaaatctgcatatgtatcaattaattaacgggtagttaaattatatgtttattttatccatggatatccattaagatatccgttctgtatccttgaag 6870305  T
Q  140 gattttatcc 149  Q
    ||||||||||    
T  6870304 gattttatcc 6870295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 42622487 - 42622357
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||| |||||  |||||||| |||||||||||||||||||| ||||||||||| |||||| ||||| || ||| ||||||||||||||  |||  ||    
T  42622487 gcgggtgcggataccattaaatccgcatccgtattcattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgt 42622388  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    ||||||||||||| |||||||||||||||||    
T  42622387 tccgtgtccgtgacggattttatccgcggat 42622357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 5110520 - 5110650
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  |||||||| |||| ||||| ||||||||||||||||||||| | || | ||||| || ||||||||||||||||||  |||  |     
T  5110520 gcgggtgtggataccattaaatccgcattcgtatccattaattagcgggtagttaaaaaattcatttattttatccatggatatccattaaggtatccgc 5110619  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    || |||||||||   ||||||||||||||||    
T  5110620 tctgtgtccgtggcagattttatccgcggat 5110650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 5704909 - 5705039
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  ||||||||  ||||||||| ||||||||||||| ||||||| | |||| ||||| || |||| |||||| ||||||  |||  ||    
T  5704909 gcgggtgtggataccattaaatccacatccgtatccattaattagcggatagttaaaaaatccatttattttatccacggatatacattaaggtatccgt 5705008  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    |||||| |||||  |||||||||||||||||    
T  5705009 tccgtgcccgtggcggattttatccgcggat 5705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 13626132 - 13626041
Alignment:
Q  24 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    ||||||||| ||||  |||||||| |||||||||| ||||||||||||||||||||| | ||| |||||| || ||||| ||||||||||||    
T  13626132 cgcgggtgtagataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctgtttattttatccatagatatccattaa 13626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 31575763 - 31575664
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||| ||||||||||  |||||||| |||||||||| ||||||||||||||||||||  | || ||||||| || |||||| ||||||||||| ||||    
T  31575763 atccgctggtgtggatacaattaaatccgcatccgtatccattaattagcgggtagttacaaaattcgtttattttatccatgcatatccattaagatat 31575664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 45151055 - 45150967
Alignment:
Q  27 gggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    |||||||||||  |||||||| ||||| |||| ||||||||||||| ||||||| | |||||||||| || |||||||||||| |||||    
T  45151055 gggtgtggataccattaaatccgcatctgtatccattaattagcggatagttaaaaaatccgtttattttatccatggatatctattaa 45150967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 5938985 - 5939112
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||| ||||  |||||||| ||||  |||| ||||||||||||||||||||| | |||| |||||  | |||||| |||||||||||  |||    
T  5938985 atccgcgggtgtagataccattaaatccgcatttgtatccattaattagcgggtagttaaaaaatccatttattatatccatgaatatccattaaggtat 5939084  T
Q  121 atgttccgtgtccgtgaaggattttatc 148  Q
      | ||| ||||||||| ||||||||||    
T  5939085 tcgctccatgtccgtgacggattttatc 5939112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 13807853 - 13807912
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaa 80  Q
    |||||||||||||||||  ||||||||  ||||||||| ||||||| |||||||||||||    
T  13807853 atccgcgggtgtggataccattaaatccacatccgtatccattaataagcgggtagttaa 13807912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 22282 - 22416
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  22282 atccgcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 22381  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  22382 ccgctccgtgtccgtggcggattttatccgcggat 22416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 35188442 - 35188312
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  | |||||| |||||||||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||||  |||  |     
T  35188442 gcgggtgtggataccactaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtatccgc 35188343  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    ||||||||||||  |||||||||||||||||    
T  35188342 tccgtgtccgtggcggattttatccgcggat 35188312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 39800267 - 39800133
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||  ||||  |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  39800267 atccgcgggtgcagataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 39800168  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  39800167 ccgctccgtgtccgtggcggattttatccgcggat 39800133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 39206951 - 39206821
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| | |||||||||| || ||||| ||||||||||||  |||  |     
T  39206951 gcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatccatcgatatccattaaggtatccgc 39206852  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    || ||| |||||  |||||||||||||||||    
T  39206851 tctgtgcccgtggcggattttatccgcggat 39206821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 23429547 - 23429670
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||||| |||  |||||||| ||||| |||| |||||||||||| |||||||| | ||||||||||||| | |||||||||||||||| ||||  ||    
T  23429547 gcgggtgtgaataccattaaatccgcatctgtatccattaattagcgagtagttaaaaaatccgtttatgttattcatggatatccattaagatatccgt 23429646  T
Q  125 tccgtgtccgtgaaggattttatc 148  Q
    |||||||||||   ||||||||||    
T  23429647 tccgtgtccgtagcggattttatc 23429670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 40057163 - 40057293
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||| |||||  |||||||| |||||||||| ||||||||||||||||||||| |||||  ||||| || ||| | ||||||||||||  |||  |     
T  40057163 gcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatctatttattttatccgtagatatccattaaggtatccgc 40057262  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    ||||||||||||  |||||||||||||||||    
T  40057263 tccgtgtccgtggcggattttatccgcggat 40057293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 39886976 - 39887102
Alignment:
Q  23 ccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatat 122  Q
    |||||||||| ||||  || ||||||||||| |||| ||||||||||| ||||||| | |||| ||||||| || |||||| ||||||||||| ||||      
T  39886976 ccgcgggtgtagataccatgaaatctgcatctgtatccattaattagcaggtagttgaaatattcgtttattttatccatgtatatccattaagatatcc 39887075  T
Q  123 gttccgtgtccgtgaaggattttatcc 149  Q
     ||| |||| ||||  |||||||||||    
T  39887076 attctgtgttcgtggcggattttatcc 39887102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 3926502 - 3926601
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  |||||||| ||||||  || ||||||| |||  |||||||| | |||||||||| || ||||| |||||||||||| ||||    
T  3926502 atccgcgggtgtggataccattaaatccgcatccacatccattaataagcatgtagttaaaaaatccgtttattttatccatagatatccattaagatat 3926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 42878773 - 42878646
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  |||||||| |||| | ||| |||||||||  ||||| |||| | |||||||||| || || |||||||| ||||||| |||    
T  42878773 atccgcgggtgtggataccattaaatccgcattcatatccattaattaatgggtatttaaaaaatccgtttattttatctatggatattcattaaagtat 42878674  T
Q  121 atgttccgtgtccgtgaaggattttatc 148  Q
     || || ||||| |||| ||| ||||||    
T  42878673 ctgctctgtgtctgtgacggagtttatc 42878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 42837821 - 42837950
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||||||||| ||||||||||||||  || | ||||| ||| ||| ||||||| | |||||||||| || ||||| |||||||||||| ||||  |     
T  42837821 gcgggtgtggatactattaaatctgcata-gtgtccattatttaacggatagttaaaaaatccgtttattttatccatagatatccattaagatatccgc 42837919  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    || ||||| |||  || ||||||||||||||    
T  42837920 tctgtgtctgtggcgggttttatccgcggat 42837950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 2209879 - 2209917
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagtt 78  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  2209879 attaaatctgcatccgtatccattaattagtgggtagtt 2209917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 33742533 - 33742404
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  |||| ||| ||||| |||| ||||||||| | | ||||||| | |||| ||||| || |||||||||||| |||||  |||        
T  33742533 gcgggtgtggatacaattacatccgcatctgtatccattaattaac-gatagttaaaaaatccatttattttatccatggatatcaattaaggtatccac 33742435  T
Q  125 tccgtgtccgtgaaggattttatccgcggat 155  Q
    ||| |||||||| |||||||||||| |||||    
T  33742434 tccatgtccgtggaggattttatccacggat 33742404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 36464619 - 36464484
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||| |||||| |||||||| ||||||||||  |||||||||||| ||||||| |||||||||||| || ||||||||||||| ||||  |||  |     
T  36464619 gcgggtgcggatatcattaaatccgcatccgtatctattaattagcggatagttaaaatatccgtttattttatccatggatatccgttaaggtatccgc 36464520  T
Q  125 tccgtgtccgtgaaggattttatccgcggatgcgga 160  Q
    ||||||||||||  ||||||||||||||| ||||||    
T  36464519 tccgtgtccgtggcggattttatccgcgggtgcgga 36464484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 40568740 - 40568625
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 139  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||||||||||||||  |||  | ||||||||||||  |    
T  40568740 attaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcg 40568641  T
Q  140 gattttatccgcggat 155  Q
     |||||||||||||||    
T  40568640 aattttatccgcggat 40568625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 22279311 - 22279443
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||| | |||| ||||| || ||||||||||||| ||||   ||    
T  22279311 atccgcgggtgtggatactattaaatctgcatctgtatccattaattaacgggtagttaa-aaatccatttattttatccatggatatcctttaagggat 22279409  T
Q  121 atgttccgtgtccgtgaaggattttatccgcgga 154  Q
      ||| ||||||| ||  ||||||||||||||||    
T  22279410 ccgtttcgtgtccatggcggattttatccgcgga 22279443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 8819113 - 8818979
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||||||||| |||||  |||||||| |||||| ||| ||||||||| | | ||||||| |||||||||||| || |||||| |||||| ||||  |||    
T  8819113 atccgcgggtgcggataccattaaatccgcatccatatccattaattaacagatagttaaaatatccgtttattttatccatgaatatccgttaaggtat 8819014  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | | ||||||||||| |||||||||||||||||    
T  8819013 ccgcttcgtgtccgtgacggattttatccgcggat 8818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 41041747 - 41041880
Alignment:
Q  22 tccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatata 121  Q
    ||||||||||||||||| |||||||  ||||| ||||  |||||||||||||||||||| | |||| ||||| || |||||  |||||||||||  |||     
T  41041747 tccgcgggtgtggatatcattaaattcgcatctgtatctattaattagcgggtagttaaaaaatccatttattttatccataaatatccattaaggtatc 41041846  T
Q  122 tgttccgtgtccgtgaaggattttatccgcggat 155  Q
     | |||||| |||| | |||||||||||||||||    
T  41041847 cgctccgtgcccgtaatggattttatccgcggat 41041880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 33340926 - 33341041
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 139  Q
    ||||||||||||||||||| ||||||||||  ||||||||| |||||||||||| || ||||| ||| || |||||  ||| | || ||||||| | | |    
T  33340926 attaaatctgcatccgtatccattaattagtaggtagttaaaatatccgtttattttatccatagatgtctattaaggtatctatttcgtgtccataacg 33341025  T
Q  140 gattttatccgcggat 155  Q
    ||||||||||||||||    
T  33341026 gattttatccgcggat 33341041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 19842041 - 19842172
Alignment:
Q  24 cgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatg 123  Q
    |||||||||||| |  |||||||| |||||  ||| ||||||||||||  ||||||| | |||||||||| || ||||||||||||||||||  |||       
T  19842041 cgcgggtgtggaaaccattaaatccgcatctttatccattaattagcgattagttaaaaaatccgtttattttatccatggatatccattaaggtatcca 19842140  T
Q  124 ttccgtgtccgtgaaggattttatccgcggat 155  Q
     ||||||||||||  |||||||||||| ||||    
T  19842141 ctccgtgtccgtggcggattttatccgtggat 19842172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 29117334 - 29117401
Alignment:
Q  41 ttaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatat 108  Q
    ||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |||||| ||||    
T  29117334 ttaaatccgcatccgtatccattaattagcgggtagttaaaatatccgtttattttatccatgaatat 29117401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 38951934 - 38952024
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    ||||||||| |||  |||||||| ||||| |||| ||||||||||||||||||||| | ||| |||||| || ||| || |||||||||||    
T  38951934 gcgggtgtgaataccattaaatccgcatctgtatccattaattagcgggtagttaaaaaatctgtttattttatccgtgaatatccattaa 38952024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 42555651 - 42555739
Alignment:
Q  27 gggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    ||||| |||||| ||||||||  ||| | ||||||||||||||  ||||||||| ||||| |||||| || | ||| ||||||||||||    
T  42555651 gggtgcggatatcattaaatccacattcatattcattaattagttggtagttaaaatatctgtttattttattcattgatatccattaa 42555739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 43624679 - 43624721
Alignment:
Q  49 gcatccgtattcattaattagcgggtagttaagatatccgttt 91  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  43624679 gcatccgtatccattaattagcgggtagttaaaaaatccgttt 43624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 23627206 - 23627266
Alignment:
Q  55 gtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    |||| ||||||||||| ||||||||| |||| ||||||| || |||||| || ||||||||    
T  23627206 gtatccattaattagcaggtagttaaaatattcgtttattttatccatgtatttccattaa 23627266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 9093 - 8959
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||| ||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  9093 atccgcgggtgcggataccattaaatcagcatccgtatccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 8994  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  8993 ccgctccgtgtccgtggcggattttatccgcggat 8959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 33189626 - 33189760
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  ||| |||  ||||| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||||  |||    
T  33189626 atccgcgggtgtggataccattgaattcgcatctgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtat 33189725  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  33189726 ccgctccgtgtccgtggcggattttatccgcggat 33189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 11039004 - 11038881
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    |||||||||||||  |||||||| | |||| ||||||||||||||||||||||||| | |||||||||| || |||||| |||||||||||  ||| ||     
T  11039004 gcgggtgtggataccattaaatccgtatccatattcattaattagcgggtagttaaaaaatccgtttattttatccatgaatatccattaaggtatctgc 11038905  T
Q  125 tccgtgtccgtgaaggattttatc 148  Q
    ||| ||||||||  ||||||||||    
T  11038904 tccatgtccgtggcggattttatc 11038881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 1052863 - 1052752
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 139  Q
    ||||||||  ||||| ||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||  |||  | ||||||||||||  |    
T  1052863 attaaatccacatccttatccattaattagcgggtagttaaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtccgtggcg 1052764  T
Q  140 gattttatccgc 151  Q
     |||||||||||    
T  1052763 aattttatccgc 1052752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 2943873 - 2943735
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||| ||||||||  ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||  ||||  |||||||||||  |||    
T  2943873 atccgcggatgtggataccattaaatctgcattcgtat-cattaattagcgggtagttaaaatatccgtttattttacccataaatatccattaaggtat 2943775  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggatgcgga 160  Q
      | ||||| ||||| | |||||||||||| || ||||||    
T  2943774 tcgctccgtatccgtaacggattttatccgtgggtgcgga 2943735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 7767302 - 7767429
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||| ||||||||||  |||||||||| |||||| | |||||||||| |||||||||| | |||||||||| || | ||||||||||||||||| |||    
T  7767302 atccgcaggtgtggataccattaaatctgaatccgtgtccattaattagggggtagttaaaaaatccgtttattttattcatggatatccattaaagtat 7767401  T
Q  121 atgttccgtgtccgtgaaggattttatc 148  Q
      | ||| ||||||||  ||||||||||    
T  7767402 ccgctccatgtccgtggcggattttatc 7767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 23809497 - 23809405
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccatt 113  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| | | | |||||| || |||||| |||||||||    
T  23809497 atccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaacctgtttattttatccatgaatatccatt 23809405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 38440226 - 38440103
Alignment:
Q  28 ggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttcc 127  Q
    ||||||||||  || ||||| |||||||||| ||||||||||||||||||||| | || ||||||| || || |||||||||||||||  ||| ||||||    
T  38440226 ggtgtggataccatcaaatccgcatccgtatccattaattagcgggtagttaaaaaattcgtttattttatctatggatatccattaaggtatctgttcc 38440127  T
Q  128 gtgtccgtgaaggattttatccgcg 152  Q
     || ||||| | |||||||||||||    
T  38440126 atgcccgtgga-gattttatccgcg 38440103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 30541290 - 30541215
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    |||||||| |||||| ||| ||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||    
T  30541290 attaaatcggcatccatatccattaattagcgggtagttaaaatattcgtttattttatccatggatatccattaa 30541215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 36299110 - 36299241
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||| ||||| |||||  ||||||||  |||  |||| ||||||||||||||||||||| |||| | ||||| || |||||||||||||||||| ||||    
T  36299110 atccgtgggtgcggataccattaaatcaacatttgtatccattaattagcgggtagttaaaatattcatttattttatccatggatatccattaagatat 36299209  T
Q  121 atgttccgtgtccgtgaaggattttatccgcg 152  Q
      | ||||||||||||   |||||||||||||    
T  36299210 ccgctccgtgtccgtggcagattttatccgcg 36299241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 27337309 - 27337420
Alignment:
Q  25 gcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgt 124  Q
    ||||||| |||||  |||||||| ||||||||||  |||||||||||||||||||| |||||| ||||| || | | ||||||||||||||  |||  |     
T  27337309 gcgggtgcggataccattaaatccgcatccgtatctattaattagcgggtagttaaaatatccatttattttattcgtggatatccattaaggtatccgc 27337408  T
Q  125 tccgtgtccgtg 136  Q
    ||||||||||||    
T  27337409 tccgtgtccgtg 27337420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 47925175 - 47925276
Alignment:
Q  54 cgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatccgcgg 153  Q
    ||||| |||||||||  |||||||||| |||||  ||||| || || | |||||||||||||  |||  ||||||||||||||  |||||||||||||||    
T  47925175 cgtatccattaattaatgggtagttaaaatatctatttattttatctaaggatatccattaaggtatccgttccgtgtccgtggcggattttatccgcgg 47925274  T
Q  154 at 155  Q
    ||    
T  47925275 at 47925276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 5973296 - 5973390
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    ||||||||||||| |||  |||||||| ||||| |||| |||||||||| || ||||||| | || ||||||| || || |||||| ||||||||    
T  5973296 atccgcgggtgtgaataccattaaatccgcatctgtatccattaattagtggatagttaaaaaattcgtttattttatcaatggatttccattaa 5973390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 7622610 - 7622744
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||||||||||  ||| | |||||||||| || ||||||||||||||||||  |||    
T  7622610 atccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtaaataaaaaatccgtttattttatccatggatatccattaaggtat 7622709  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | |||| |||||||  |||||||||||||||||    
T  7622710 ccgctccgcgtccgtggcggattttatccgcggat 7622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 641818 - 641721
Alignment:
Q  55 gtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatccgcg 152  Q
    |||| ||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||  | ||||||||||||  | ||||||||||||    
T  641818 gtatccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaaaatatccgctccgtgtccgtggtgaattttatccgcg 641721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 35167090 - 35167015
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    ||||||||  |||||||||  |||||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  35167090 attaaatccacatccgtatcaattaattagcgggtagttaaaatatccgtttattttatccatggatatctattaa 35167015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 10788789 - 10788917
Alignment:
Q  26 cgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgtt 125  Q
    |||||||||||| |||||||||  |||  |||| ||||||||||| ||||||||| | || ||||||| || ||||||||||||||||||  |||  | |    
T  10788789 cgggtgtggatactattaaatccacatttgtatccattaattagcaggtagttaa-aaattcgtttattttatccatggatatccattaaggtatccgct 10788887  T
Q  126 ccgtgtccgtgaaggattttatccgcggat 155  Q
    ||||| |||||  | |||||||||||||||    
T  10788888 ccgtgcccgtggcgaattttatccgcggat 10788917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 28582478 - 28582563
Alignment:
Q  27 gggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccat 112  Q
    ||||||||||| ||||||||| | ||  |||| || |||||| ||||||||||| |||||||||||| || |||||||||||||||    
T  28582478 gggtgtggatactattaaatccgtatttgtatccactaattaacgggtagttaaaatatccgtttattttatccatggatatccat 28582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 10408743 - 10408630
Alignment:
Q  42 taaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaagga 141  Q
    |||||||||||| ||||  | || ||||||||||||| | |||||||||||| || |||||| |||||||||||  |||  | ||||| ||||||  |||    
T  10408743 taaatctgcatctgtatctactatttagcgggtagttgaaatatccgtttattttatccatgaatatccattaaggtatccgctccgtttccgtggcgga 10408644  T
Q  142 ttttatccgcggat 155  Q
    ||||||| ||||||    
T  10408643 ttttatctgcggat 10408630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 8577046 - 8577127
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccat 102  Q
    |||| ||||||||||||  |||||||||||||| |||| ||||||||| ||| | ||||| | | |||||||| || |||||    
T  8577046 atccacgggtgtggataccattaaatctgcatctgtatccattaattaacggttggttaaaaaaaccgtttattttatccat 8577127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 12149292 - 12149426
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    ||||||||||| |||||  |||||||| |||||||||| ||||||||| ||||||||||| |||||| ||||| || ||| ||||||||||||||  |||    
T  12149292 atccgcgggtgcggataccattaaatcagcatccgtatccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 12149391  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | ||||||||||||  |||||||||||||||||    
T  12149392 ccgctccgtgtccgtggcggattttatccgcggat 12149426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 25874526 - 25874390
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgt--tttccatggatatccattaaaat 118  Q
    |||||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||| | |||||||||| |  | ||||||||||||||||||  |    
T  25874526 atccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatatccatggatatccattaaggt 25874427  T
Q  119 atatgttccgtgtccgtgaaggattttatccgcggat 155  Q
    ||  | ||||||  ||||| |||||||||||||||||    
T  25874426 atccgctccgtgctcgtgacggattttatccgcggat 25874390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 27926448 - 27926322
Alignment:
Q  29 gtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccg 128  Q
    |||||||||  |||||||| |||||||||| ||||||||||||||||||||| | |||  ||||| || ||||||||||||||||||  |||  | ||||    
T  27926448 gtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctatttattttatccatggatatccattaaggtatccgctccg 27926349  T
Q  129 tgtccgtgaaggattttatccgcggat 155  Q
    ||||||||  |||||||||||||||||    
T  27926348 tgtccgtggcggattttatccgcggat 27926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 21288398 - 21288530
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagtt-aagatatccgtttatgttttccatggatatccattaaaata 119  Q
    |||||||||||||||||  |||||||| |||||| ||| ||||||||||||||||||| || | |||||||||| || ||||| |||||||||||| |||    
T  21288398 atccgcgggtgtggataccattaaatccgcatccctatccattaattagcgggtagttaaaaaaatccgtttattttatccatagatatccattaagata 21288497  T
Q  120 tatgttccgtgtccgtgaaggattttatccgcg 152  Q
    |  | |||||| |||||| | ||||||||||||    
T  21288498 tccgctccgtgcccgtgacgtattttatccgcg 21288530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 13826359 - 13826486
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||||||||||  |||||||||| |||| ||| |||||||||||| |||||||| | |||||||||| || |||||||||||| |||||  |||    
T  13826359 atccgcgggtgtggataccattaaatctgtatccatatccattaattagcgagtagttaaaaaatccgtttattttatccatggatatctattaatgtat 13826458  T
Q  121 atgttccgtgtccgtgaaggattttatc 148  Q
     || |||||| |||||  ||||||||||    
T  13826459 ctgctccgtgcccgtggcggattttatc 13826486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 3778800 - 3778666
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||||||||| ||||||   ||||||| ||||| |||| ||||||||||||| ||||||| | ||| |||||| || | ||||||||||||||||  |||    
T  3778800 atccgcgggtatggataccgttaaatccgcatctgtatccattaattagcggatagttaaaaaatctgtttattttattcatggatatccattaaggtat 3778701  T
Q  121 atgttccgtgtccgtgaaggattttatccgcggat 155  Q
      | |||||| |||||  |||||||||||||||||    
T  3778700 ccgctccgtgcccgtggcggattttatccgcggat 3778666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 5295521 - 5295615
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaa 115  Q
    |||||| ||||| ||||  |||||||||||||| |||| |||||||||| |||||||||| | || ||||||| || | ||||||||||||||||    
T  5295521 atccgcaggtgtagataccattaaatctgcatctgtatccattaattagtgggtagttaaaaaatacgtttattttattcatggatatccattaa 5295615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 48251271 - 48251176
Alignment:
Q  60 cattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaaggattttatccgcggat 155  Q
    ||||||||||| | || |||| |||||| ||||| || ||||| ||||||||||||| ||| || ||||| |||||||  ||||||||||||||||    
T  48251271 cattaattagcagttaattaaaatatccatttattttatccatagatatccattaaagtatctgctccgtatccgtgacagattttatccgcggat 48251176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 36585032 - 36585097
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatc 86  Q
    ||||||||||| |||||  ||| ||||||||||||||| ||||||||||||||||| ||| |||||    
T  36585032 atccgcgggtgcggataccatttaatctgcatccgtatccattaattagcgggtagataaaatatc 36585097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 6768 - 6637
Alignment:
Q  21 atccgcgggtgtggatattattaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatat 120  Q
    |||| ||||||||||||  |||||||| ||||| |||| |||||||||  || ||||||  | |||| ||||| || ||||||||||| |||||| ||||    
T  6768 atccacgggtgtggataccattaaatccgcatctgtatccattaattaatggttagttagaaaatccatttattttatccatggatattcattaagatat 6669  T
Q  121 atgttccgtgtccgtgaaggattttatccgcg 152  Q
      |||||||| |||||| ||||||||||||||    
T  6668 tcgttccgtgcccgtgacggattttatccgcg 6637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 66865 - 66980
Alignment:
Q  40 attaaatctgcatccgtattcattaattagcgggtagttaagatatccgtttatgttttccatggatatccattaaaatatatgttccgtgtccgtgaag 139  Q
    ||||||| || |||| ||||||| |||||| |||||| ||| |||||||||||| || ||||||||||||||||||  |||  | |||||||| ||||      
T  66865 attaaatatgtatccatattcatcaattagagggtagataaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtctgtgaca 66964  T
Q  140 gattttatccgcggat 155  Q
    |||||||||| |||||    
T  66965 gattttatccacggat 66980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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