View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2228_low_6 (Length: 456)

Name: NF2228_low_6
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2228_low_6
NF2228_low_6
[»] chr5 (17 HSPs)
chr5 (1-393)||(40567694-40568082)
chr5 (271-393)||(37247891-37248008)
chr5 (343-393)||(6154524-6154574)
chr5 (343-393)||(26668232-26668282)
chr5 (343-393)||(26939829-26939879)
chr5 (343-393)||(37537030-37537080)
chr5 (343-393)||(37646149-37646199)
chr5 (344-393)||(7452710-7452759)
chr5 (333-393)||(12103998-12104058)
chr5 (345-393)||(29167065-29167113)
chr5 (343-393)||(36424592-36424642)
chr5 (343-393)||(36430472-36430522)
chr5 (343-389)||(39519349-39519395)
chr5 (343-389)||(39523988-39524034)
chr5 (343-393)||(40148797-40148847)
chr5 (343-386)||(23689025-23689068)
chr5 (343-393)||(10759453-10759503)
[»] chr1 (13 HSPs)
chr1 (257-393)||(12260848-12260980)
chr1 (25-84)||(30747231-30747290)
chr1 (25-84)||(30768682-30768741)
chr1 (257-393)||(16036478-16036610)
chr1 (343-393)||(10136279-10136329)
chr1 (343-393)||(10141047-10141097)
chr1 (263-388)||(39586175-39586296)
chr1 (343-393)||(16648722-16648772)
chr1 (343-393)||(19798087-19798137)
chr1 (343-393)||(25844710-25844760)
chr1 (343-393)||(51040613-51040663)
chr1 (345-393)||(11807175-11807223)
chr1 (343-388)||(26926816-26926862)
[»] chr4 (25 HSPs)
chr4 (263-388)||(12875282-12875403)
chr4 (343-393)||(8694667-8694717)
chr4 (343-393)||(12823002-12823052)
chr4 (343-393)||(31728457-31728507)
chr4 (333-388)||(5270519-5270575)
chr4 (343-393)||(2820746-2820796)
chr4 (343-393)||(5925887-5925937)
chr4 (343-393)||(13064902-13064952)
chr4 (343-393)||(27183189-27183239)
chr4 (343-393)||(33468094-33468144)
chr4 (343-393)||(37258955-37259005)
chr4 (343-393)||(37263655-37263705)
chr4 (343-393)||(55252598-55252648)
chr4 (346-389)||(16958263-16958306)
chr4 (343-393)||(13060420-13060470)
chr4 (343-393)||(16422000-16422050)
chr4 (343-393)||(19907202-19907252)
chr4 (343-393)||(31274468-31274518)
chr4 (343-388)||(31766826-31766872)
chr4 (343-393)||(32081257-32081307)
chr4 (343-377)||(32220672-32220706)
chr4 (271-393)||(51698813-51698933)
chr4 (337-393)||(19107526-19107582)
chr4 (337-377)||(28601577-28601617)
chr4 (345-393)||(29349297-29349345)
[»] chr8 (14 HSPs)
chr8 (343-397)||(1808405-1808459)
chr8 (343-393)||(28559208-28559258)
chr8 (343-393)||(33417484-33417534)
chr8 (271-388)||(23547701-23547812)
chr8 (343-393)||(28564387-28564437)
chr8 (343-393)||(38181374-38181424)
chr8 (343-393)||(40124986-40125036)
chr8 (343-393)||(44925013-44925063)
chr8 (344-393)||(2966540-2966589)
chr8 (345-393)||(26780060-26780108)
chr8 (343-393)||(18875477-18875527)
chr8 (343-384)||(17027095-17027136)
chr8 (343-384)||(17557587-17557628)
chr8 (345-381)||(1910051-1910087)
[»] chr7 (15 HSPs)
chr7 (257-393)||(13313406-13313539)
chr7 (343-387)||(44508427-44508471)
chr7 (343-393)||(12256976-12257026)
chr7 (347-388)||(10387447-10387488)
chr7 (338-393)||(3046523-3046578)
chr7 (343-393)||(3880922-3880972)
chr7 (343-393)||(4931177-4931227)
chr7 (343-393)||(12181844-12181894)
chr7 (343-393)||(26342161-26342211)
chr7 (343-397)||(8269254-8269308)
chr7 (343-393)||(12800344-12800394)
chr7 (343-393)||(23247650-23247700)
chr7 (343-388)||(21672159-21672204)
chr7 (345-393)||(10392181-10392229)
chr7 (271-299)||(15973610-15973638)
[»] scaffold0002 (2 HSPs)
scaffold0002 (343-388)||(443036-443081)
scaffold0002 (343-393)||(5018-5068)
[»] chr6 (16 HSPs)
chr6 (271-393)||(16835254-16835371)
chr6 (343-393)||(6406952-6407002)
chr6 (343-393)||(17600334-17600384)
chr6 (343-393)||(17963650-17963700)
chr6 (343-395)||(11569781-11569833)
chr6 (343-393)||(5856939-5856989)
chr6 (343-393)||(11533793-11533843)
chr6 (343-393)||(11559303-11559353)
chr6 (343-393)||(12405452-12405502)
chr6 (343-393)||(14509931-14509981)
chr6 (343-393)||(22610465-22610515)
chr6 (345-393)||(25313565-25313613)
chr6 (345-393)||(26201059-26201107)
chr6 (343-393)||(11612995-11613045)
chr6 (343-393)||(19994476-19994526)
chr6 (345-393)||(20747389-20747437)
[»] chr3 (16 HSPs)
chr3 (337-393)||(14437782-14437838)
chr3 (333-393)||(55326721-55326781)
chr3 (265-393)||(29351107-29351231)
chr3 (343-393)||(7570307-7570357)
chr3 (343-393)||(18468166-18468216)
chr3 (343-393)||(18472960-18473010)
chr3 (343-393)||(27709885-27709935)
chr3 (343-393)||(39774917-39774967)
chr3 (343-393)||(23660581-23660631)
chr3 (343-393)||(23665213-23665263)
chr3 (344-393)||(55432182-55432231)
chr3 (337-393)||(46964961-46965017)
chr3 (343-393)||(12964975-12965026)
chr3 (343-393)||(757456-757505)
chr3 (257-393)||(7860578-7860712)
chr3 (343-393)||(20520915-20520965)
[»] chr2 (18 HSPs)
chr2 (343-393)||(12361203-12361253)
chr2 (343-393)||(19891597-19891647)
chr2 (343-393)||(19896904-19896954)
chr2 (343-393)||(29678632-29678682)
chr2 (271-393)||(40846674-40846791)
chr2 (345-393)||(18345372-18345420)
chr2 (343-393)||(17968055-17968106)
chr2 (343-393)||(17974442-17974493)
chr2 (343-393)||(12797883-12797933)
chr2 (343-393)||(25477381-25477431)
chr2 (343-393)||(25496476-25496526)
chr2 (343-393)||(30651868-30651918)
chr2 (343-393)||(9179820-9179869)
chr2 (343-393)||(9184511-9184560)
chr2 (343-393)||(34495198-34495248)
chr2 (343-383)||(1934093-1934133)
chr2 (251-299)||(23853596-23853644)
chr2 (343-379)||(24537129-24537165)
[»] scaffold0690 (1 HSPs)
scaffold0690 (343-388)||(6186-6231)
[»] scaffold0352 (1 HSPs)
scaffold0352 (345-393)||(8065-8113)
[»] scaffold0057 (1 HSPs)
scaffold0057 (343-393)||(36076-36126)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 40568082 - 40567694
Alignment:
Q  1 atcctactaacatgcggtttttaaaaacaacacctactcttaaaacacactagagactataagggctatacataaaatttgtactccaatgcatgaatct 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  40568082 atcctactaacatgcagtttttaaaaacaacacctactcttaaaacatactagagactataatggctatacatgaaatttgtactccaatgcacgaatct 40567983  T
Q  101 ctacatttgcatatgaatagatgatccaacctttagcatcttggtcaaaaaactcgaccatttttcctcttgaaaccaaggaaaaagtggacaatacata 200  Q
    ||    |||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40567982 ct----ttgcatatcaatagatgatccaacctttagcatattggccaaagaacttgaccatttttcctcttgaaaccaaggaaaaagtggacaatacata 40567887  T
Q  201 cattgtaaattgttttaatcaacttaattaatcagaaacnnnnnnnnagcactcaattggaatctcaattttatcacaaccaacataaactaaaattata 300  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  40567886 cattgtaaattgttttaatcaacttaattaatcagaaacttttttttagcactcagttggaatctaaattttatcacaaccaacataaactaaaattata 40567787  T
Q  301 gaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
     |||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40567786 aaatgtgatattcatgtacaaaaaagtataagtaattactattatttttatcattataagatatttaaaattaaataccacaatttaatcact 40567694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 393
Target Start/End: Complemental strand, 37248008 - 37247891
Alignment:
Q  271 ttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaatatttaaaa 370  Q
    |||||||||||| ||||||||||| |||| ||| |||||||||     |||| ||  |||| ||| || || ||||||||||||||| || |||||||||    
T  37248008 ttatcacaaccaccataaactaaatttatggaaagtgatattct----caaataaaaataa-taattactattatttttatcattatcaagtatttaaaa 37247914  T
Q  371 ttaaataccacaatttaatcact 393  Q
    |||||||||||||||||| ||||    
T  37247913 ttaaataccacaatttaaacact 37247891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 6154574 - 6154524
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  6154574 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 6154524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 26668232 - 26668282
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  26668232 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 26668282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 26939829 - 26939879
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  26939829 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 26939879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 37537080 - 37537030
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  37537080 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 37537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 37646199 - 37646149
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  37646199 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 37646149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 7452710 - 7452759
Alignment:
Q  344 atttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  7452710 atttttatcattatcaagtatttaaaattaaataccacaatttaaacact 7452759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 12103998 - 12104058
Alignment:
Q  333 taactattagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||| || ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  12103998 taactactattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 12104058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 29167113 - 29167065
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  29167113 tttttatcattatcaagtatttaaaattaaataccacaatttaaacact 29167065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 36424592 - 36424642
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||  || ||||||||||||||||||||||||||| ||||    
T  36424592 tatttttatcattaccaagtatttaaaattaaataccacaatttaagcact 36424642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 36430472 - 36430522
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  36430472 tatttttatcattaccaaatatttaaaattaaataccataatttaaacact 36430522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 39519349 - 39519395
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaat 389  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  39519349 tatttttatcactatcaagtatttaaaattaaataccacaatttaat 39519395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 39523988 - 39524034
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaat 389  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  39523988 tatttttatcactatcaagtatttaaaattaaataccacaatttaat 39524034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 40148797 - 40148847
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  40148797 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 40148847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 23689025 - 23689068
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaattt 386  Q
    |||||||| ||||||||  |||||||||||||||||||||||||    
T  23689025 tatttttaccattataaggtatttaaaattaaataccacaattt 23689068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 10759503 - 10759453
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||  |||||||| ||||    
T  10759503 tatttttatcattatcaagtatttaaaattaaatactgcaatttaaacact 10759453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 393
Target Start/End: Original strand, 12260848 - 12260980
Alignment:
Q  257 ttggaatctcaattttatcacaaccaacataaactaaaattat-agaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcatt 355  Q
    ||||| ||||||| |||||||||||||||||| |||||||||| |||| ||||||| |||| | ||||||  |||| || ||||||   |||||||||||    
T  12260848 ttggattctcaatcttatcacaaccaacataagctaaaattatgagaa-gtgatatccatgaataaaaaataataatta-ctatta---tttttatcatt 12260942  T
Q  356 ataaaatatttaaaattaaataccacaatttaatcact 393  Q
    || || |||||||||||||||||||| |||||| ||||    
T  12260943 atcaagtatttaaaattaaataccactatttaaacact 12260980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 30747290 - 30747231
Alignment:
Q  25 aaacaacacctactcttaaaacacactagagactataagggctatacataaaatttgtac 84  Q
    ||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||    
T  30747290 aaacaacacctactcttaaaacataccagagattataatggctatacataaaatttgtac 30747231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 30768741 - 30768682
Alignment:
Q  25 aaacaacacctactcttaaaacacactagagactataagggctatacataaaatttgtac 84  Q
    ||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||    
T  30768741 aaacaacacctactcttaaaacataccagagattataatggctatacataaaatttgtac 30768682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 393
Target Start/End: Original strand, 16036478 - 16036610
Alignment:
Q  257 ttggaatctcaattttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcatta 356  Q
    ||||| ||||||| |||||||||| ||||||| |||||||||| ||| ||||||||||||   || |||| |||| |||  |||| |||||| |||||||    
T  16036478 ttggattctcaatcttatcacaacaaacataacctaaaattatggaaagtgatattcatg---aataaagaataa-taataattattattttcatcatta 16036573  T
Q  357 taaaatatttaaaattaaataccacaatttaatcact 393  Q
    | |  |||||||| ||||||||||| |||||| ||||    
T  16036574 tcaggtatttaaatttaaataccactatttaaacact 16036610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 10136279 - 10136329
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  10136279 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 10136329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 10141047 - 10141097
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  10141047 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 10141097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 388
Target Start/End: Complemental strand, 39586296 - 39586175
Alignment:
Q  263 tctcaattttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaat 362  Q
    ||||||| |||||||||| |||||||  ||||||| | | | ||||||||||||   || |||| |||| ||| ||||| ||||||||||||||| |  |    
T  39586296 tctcaatcttatcacaacaaacataacttaaaattgtgggaagtgatattcatg---aataaagaataa-taattattattatttttatcattatcaggt 39586201  T
Q  363 atttaaaattaaataccacaatttaa 388  Q
    ||||||||||||||| ||| ||||||    
T  39586200 atttaaaattaaatatcactatttaa 39586175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 16648772 - 16648722
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  16648772 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 16648722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 19798137 - 19798087
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  19798137 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 19798087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 25844710 - 25844760
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  25844710 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 25844760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 51040663 - 51040613
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||| |||||||||| ||||    
T  51040663 tatttttatcattatcaagtatttaaaattaaataacacaatttaaacact 51040613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 11807175 - 11807223
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || |||||||| |||||||||||||||||| ||||    
T  11807175 tttttatcattatcaagtatttaaatttaaataccacaatttaaacact 11807223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 26926862 - 26926816
Alignment:
Q  343 tatttttatcattataaaatatttaaaa-ttaaataccacaatttaa 388  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||    
T  26926862 tatttttatcattatcaagtatttaaaaattaaataccacaatttaa 26926816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 388
Target Start/End: Original strand, 12875282 - 12875403
Alignment:
Q  263 tctcaattttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaat 362  Q
    ||||||| |||||||||||||||||| |||||||||| | | ||||||||||||   |||||   |||| ||| || || ||| ||||||||||| ||||    
T  12875282 tctcaatgttatcacaaccaacataacctaaaattatgggaagtgatattcatgagtaaaaa---ataa-taattactattatgtttatcattatcaaat 12875377  T
Q  363 atttaaaattaaataccacaatttaa 388  Q
    ||||||||| ||||||||| ||||||    
T  12875378 atttaaaatcaaataccactatttaa 12875403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 8694667 - 8694717
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  8694667 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 8694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 12823052 - 12823002
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  12823052 tatttttatcattataaagtatttaaaattaaataccacagtttaaacact 12823002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 31728507 - 31728457
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  31728507 tatttttatcattatgaagtatttaaaattaaataccacaatttaaacact 31728457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 5270575 - 5270519
Alignment:
Q  333 taactattagtatttttatcattataaaa-tatttaaaattaaataccacaatttaa 388  Q
    |||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||    
T  5270575 taactactattatttttatcattatcaaagtatttaaaattaaataccacaatttaa 5270519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 2820746 - 2820796
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  2820746 tatttttatcattatcaaataattaaaattaaataccgcaatttaaacact 2820796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 5925937 - 5925887
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||| ||||    
T  5925937 tatttttatcattatcaagtatttaaaattaaataccataatttaaacact 5925887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 13064952 - 13064902
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  13064952 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 13064902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 27183189 - 27183239
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||| ||||    
T  27183189 tatttttatcattatcaagtatttaaaattaaataccataatttaaacact 27183239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 33468144 - 33468094
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||| ||||    
T  33468144 tatttttatcattatcaagtatttaaaattaaatactacaatttaaacact 33468094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 37259005 - 37258955
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  37259005 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 37258955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 37263705 - 37263655
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  37263705 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 37263655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 55252598 - 55252648
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  55252598 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 55252648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 16958263 - 16958306
Alignment:
Q  346 ttttatcattataaaatatttaaaattaaataccacaatttaat 389  Q
    |||||||||||| || ||||||||||||||||| ||||||||||    
T  16958263 ttttatcattatgaagtatttaaaattaaatacaacaatttaat 16958306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 13060420 - 13060470
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||| |||||||||| || |||||||||||||||||| |||||||| ||||    
T  13060420 tattgttatcattatcaagtatttaaaattaaataccgcaatttaaacact 13060470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 16422000 - 16422050
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||| ||||||||||||| |||||||| ||||    
T  16422000 tatttttatcattatcaagtattgaaaattaaataccgcaatttaaacact 16422050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 19907202 - 19907252
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||| || || |||||||||||||||||| |||||||| ||||    
T  19907202 tatttttatcatcatcaagtatttaaaattaaataccgcaatttaaacact 19907252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 31274468 - 31274518
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| | | || ||||||||||||||||||||||||||| ||||    
T  31274468 tatttttatcactgtcaagtatttaaaattaaataccacaatttaaacact 31274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 31766826 - 31766872
Alignment:
Q  343 tatttttatcattataaaatatttaaaa-ttaaataccacaatttaa 388  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||    
T  31766826 tatttttatcattatcaagtatttaaaaattaaataccacaatttaa 31766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 32081307 - 32081257
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||| ||||| || |||||||||||||||| |||||||||| ||||    
T  32081307 tatttttataattatcaagtatttaaaattaaatatcacaatttaaacact 32081257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 32220706 - 32220672
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaata 377  Q
    ||||||||||||||| |||||||||||||||||||    
T  32220706 tatttttatcattatcaaatatttaaaattaaata 32220672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 393
Target Start/End: Original strand, 51698813 - 51698933
Alignment:
Q  271 ttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaatatttaaaa 370  Q
    |||||||||||| ||||| ||||| |||| ||| |||||||||  | | ||||||  |||| || |||||  | ||||||||||||| ||  ||||||||    
T  51698813 ttatcacaaccaccataagctaaatttatggaaagtgatattctcgaataaaaaataataatta-ctattttt-tttttatcattatcaagcatttaaaa 51698910  T
Q  371 ttaaataccacaatttaatcact 393  Q
    ||||||||| |||||||| ||||    
T  51698911 ttaaataccgcaatttaaacact 51698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 19107526 - 19107582
Alignment:
Q  337 tattagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||| |||||| |||||||| |  |||||||||||||||||||| |||||| ||||    
T  19107526 tattattattttcatcattatcaggtatttaaaattaaataccactatttaaacact 19107582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 28601577 - 28601617
Alignment:
Q  337 tattagtatttttatcattataaaatatttaaaattaaata 377  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  28601577 tattattatttttatcattactaaatatttaaaattaaata 28601617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 29349345 - 29349297
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||||  | |||||||||||||||||| |||||||| ||||    
T  29349345 tttttatcattatccagtatttaaaattaaataccgcaatttaaacact 29349297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 1808405 - 1808459
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcacttcta 397  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  1808405 tatttttatcattatcaaatatttaaaattaaataccgcaatttaaacacttcta 1808459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 28559258 - 28559208
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  28559258 tatttttatcattatcaaatatttaaaattaaataccgcaatttaaacact 28559208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 33417484 - 33417534
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  33417484 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 33417534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 23547812 - 23547701
Alignment:
Q  271 ttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaatatttaaaa 370  Q
    |||||||||||| ||||||||||| ||||||||  ||||||||||| | |||||      | ||| || || ||||||||||||||| || |||||||||    
T  23547812 ttatcacaaccaccataaactaaatttatagaaa-tgatattcatgaataaaaac-----aataattactattatttttatcattatcaagtatttaaaa 23547719  T
Q  371 ttaaataccacaatttaa 388  Q
    ||||||||| ||||||||    
T  23547718 ttaaataccgcaatttaa 23547701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 28564437 - 28564387
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||| ||||    
T  28564437 tatttttatcattatcaaatatttaaaattaaataccgtaatttaaacact 28564387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 38181424 - 38181374
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  38181424 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 38181374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 40125036 - 40124986
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  40125036 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 40124986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 44925063 - 44925013
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  44925063 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 44925013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 2966540 - 2966589
Alignment:
Q  344 atttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  2966540 atttttatcattattaagtatttaaaattaaataccgcaatttaaacact 2966589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 26780060 - 26780108
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  26780060 tttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 26780108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 18875527 - 18875477
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||| ||||||||| || |||||||||||||||||| |||||||| ||||    
T  18875527 tatttgtatcattatcaagtatttaaaattaaataccgcaatttaaacact 18875477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 17027095 - 17027136
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaat 384  Q
    ||||||||| ||||| || |||||||||||||||||||||||    
T  17027095 tatttttatgattatcaagtatttaaaattaaataccacaat 17027136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 17557587 - 17557628
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaat 384  Q
    ||||||||| ||||| || |||||||||||||||||||||||    
T  17557587 tatttttatgattatcaagtatttaaaattaaataccacaat 17557628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 1910087 - 1910051
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccac 381  Q
    ||||||||||||| || ||||||||||||||||||||    
T  1910087 tttttatcattatcaagtatttaaaattaaataccac 1910051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 393
Target Start/End: Complemental strand, 13313539 - 13313406
Alignment:
Q  257 ttggaatctcaattttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcatta 356  Q
    ||||| |||| || |||||||||||||||||||||||||||||   | ||||||| |||| | ||||||    || ||| | ||| |||||| |||||||    
T  13313539 ttggattctcgatcttatcacaaccaacataaactaaaattatgtgaagtgatatccatgaataaaaaaa---aaataattgttattattttcatcatta 13313443  T
Q  357 taaaatatttaaaattaaataccacaatttaatcact 393  Q
    | || |||||||||||||||||||| |||||| ||||    
T  13313442 tcaagtatttaaaattaaataccactatttaaacact 13313406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 44508471 - 44508427
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaattta 387  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  44508471 tatttttatcattatcaaatatttaaaattaaataccacaattta 44508427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 12256976 - 12257026
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  12256976 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 12257026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 10387488 - 10387447
Alignment:
Q  347 tttatcattataaaatatttaaaattaaataccacaatttaa 388  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  10387488 tttatcattatcaaatatttaaaattaaataccacaatttaa 10387447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 3046523 - 3046578
Alignment:
Q  338 attagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||| ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  3046523 attattatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 3046578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 3880922 - 3880972
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||| |||||||||| ||||    
T  3880922 tatttttatcattatcaagtatttaaaattaaatatcacaatttaagcact 3880972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 4931177 - 4931227
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  4931177 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 4931227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 12181894 - 12181844
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  12181894 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 12181844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 26342161 - 26342211
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||| |||||||||| ||||    
T  26342161 tatttttatcattatcaagtatttaaaattaaatatcacaatttaaacact 26342211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 8269254 - 8269308
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcacttcta 397  Q
    ||||||||||||||| || |||||||||||||||| | || ||||| ||||||||    
T  8269254 tatttttatcattatcaagtatttaaaattaaatatcgcagtttaaacacttcta 8269308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 12800344 - 12800394
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||  |||||||| ||||    
T  12800344 tatttttatcattatcaagtatttaaaattaaatactgcaatttaaacact 12800394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 23247700 - 23247650
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||  ||||||| ||||    
T  23247700 tatttttatcattatcaagtatttaaaattaaataccgtaatttaaacact 23247650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 21672159 - 21672204
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaa 388  Q
    ||||||||||||||| || ||| |||||||||||||| ||||||||    
T  21672159 tatttttatcattatcaagtatataaaattaaataccgcaatttaa 21672204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 10392229 - 10392181
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||| ||||| || |||||||||||||||||| |||||||| ||||    
T  10392229 tttttattattatcaagtatttaaaattaaataccgcaatttaaacact 10392181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 15973610 - 15973638
Alignment:
Q  271 ttatcacaaccaacataaactaaaattat 299  Q
    |||||||||||||||||||||||||||||    
T  15973610 ttatcacaaccaacataaactaaaattat 15973638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 443081 - 443036
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaa 388  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  443081 tatttttatcattatcaaatatttaaaattaaataccacaatttaa 443036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 5018 - 5068
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  5018 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 5068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 393
Target Start/End: Complemental strand, 16835371 - 16835254
Alignment:
Q  271 ttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaatatttaaaa 370  Q
    |||||||||||| ||||||||||| |||| ||| |||||||||     |||| ||  |||| ||| || || ||||||||||||||| || |||||||||    
T  16835371 ttatcacaaccaccataaactaaatttatggaaagtgatattct----caaataaaaataa-taattactattatttttatcattatcaagtatttaaaa 16835277  T
Q  371 ttaaataccacaatttaatcact 393  Q
    |||||||||||||||||| ||||    
T  16835276 ttaaataccacaatttaaacact 16835254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 6407002 - 6406952
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  6407002 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 6406952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 17600334 - 17600384
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  17600334 tatttttatcattatcaattatttaaaattaaataccacaatttaaacact 17600384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 17963700 - 17963650
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  17963700 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 17963650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 11569833 - 11569781
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcacttc 395  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||||    
T  11569833 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacacttc 11569781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 5856939 - 5856989
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  5856939 tatttttatcattatcaattatttaaaattaaataccgcaatttaaacact 5856989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 11533843 - 11533793
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  11533843 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 11533793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 11559353 - 11559303
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  11559353 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 11559303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 12405502 - 12405452
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||| |||| |||||||||||||    
T  12405502 tatttttatcattatcaagtatttaaaattaagtacctcaatttaatcact 12405452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 14509931 - 14509981
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||| ||||    
T  14509931 tatttttattattattaagtatttaaaattaaataccacaatttaaacact 14509981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 22610465 - 22610515
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||| ||||    
T  22610465 tatttttatcattatcaagtatttaaaattaaataccaaaatttaaacact 22610515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 25313613 - 25313565
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  25313613 tttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 25313565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 26201107 - 26201059
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  26201107 tttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 26201059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 11613045 - 11612995
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||  ||||||| ||||    
T  11613045 tatttttatcattatcaagtatttaaaattaaataccgaaatttaaacact 11612995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 19994526 - 19994476
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||| || || |||||||||||||||||| |||||||| ||||    
T  19994526 tatttttatcataatcaagtatttaaaattaaataccgcaatttaaacact 19994476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 20747437 - 20747389
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||| |||| || |||||||||||||||||| |||||||| ||||    
T  20747437 tttttatcgttatcaagtatttaaaattaaataccgcaatttaaacact 20747389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 14437838 - 14437782
Alignment:
Q  337 tattagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  14437838 tattattatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 14437782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 55326721 - 55326781
Alignment:
Q  333 taactattagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||| || ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  55326721 taactactattatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 55326781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 393
Target Start/End: Original strand, 29351107 - 29351231
Alignment:
Q  265 tcaattttatcacaaccaacataaactaaaattat-agaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaata 363  Q
    ||||| |||||||||| ||||||| |||||||||| |||| ||||||| ||||   || |||| |||| ||| ||||| |||||| |||||||| | |||    
T  29351107 tcaatcttatcacaacaaacataatctaaaattatgagaa-gtgatatccatg---aataaagaataa-taattattattattttcatcattatcagata 29351201  T
Q  364 tttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||||||||| |||||| ||||    
T  29351202 tttaaaattaaataccactatttaaacact 29351231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 7570357 - 7570307
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  7570357 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 7570307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 18468166 - 18468216
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  18468166 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 18468216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 18472960 - 18473010
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  18472960 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 18473010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 27709885 - 27709935
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  27709885 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 27709935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 39774967 - 39774917
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  39774967 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 39774917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 23660631 - 23660581
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  23660631 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 23660581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 23665263 - 23665213
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  23665263 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 23665213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 55432182 - 55432231
Alignment:
Q  344 atttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    |||||||||||||| ||||||||||||||||||||  |||||||| ||||    
T  55432182 atttttatcattatcaaatatttaaaattaaatactgcaatttaaacact 55432231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 46964961 - 46965017
Alignment:
Q  337 tattagtatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||| ||||||||||||||| || |||||||||||||||||| || ||||| ||||    
T  46964961 tattattatttttatcattatcaagtatttaaaattaaataccgcagtttaaacact 46965017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 12965026 - 12964975
Alignment:
Q  343 tatttttatcattataaaatattt-aaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  12965026 tatttttatcattatcaaatattttaaaattaaataccgcaatttaaacact 12964975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 757505 - 757456
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||| |||||||||||||||||| ||||    
T  757505 tatttttatcattatcaagtatttaaa-ttaaataccacaatttaaacact 757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 393
Target Start/End: Original strand, 7860578 - 7860712
Alignment:
Q  257 ttggaatctcaattttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcatta 356  Q
    ||||| ||||||||||||||||  ||||| || | ||| |||||| | |||||||  ||| | ||||||  |||| || |||||  | ||||||||||||    
T  7860578 ttggattctcaattttatcacattcaacacaagcgaaagttataggaagtgatatgaatgaataaaaaataataaata-ctatt--tttttttatcatta 7860674  T
Q  357 taaaatattt-aaaattaaataccacaatttaatcact 393  Q
    ||| |||||| |||||||||||||| ||||||| ||||    
T  7860675 taagatatttaaaaattaaataccataatttaaacact 7860712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 20520915 - 20520965
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||| ||||||||| |||||||| ||||    
T  20520915 tatttttatcattatcaagtatttaaagttaaataccgcaatttaaacact 20520965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 12361203 - 12361253
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  12361203 tatttttatcattatcaattatttaaaattaaataccacaatttaaacact 12361253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 19891647 - 19891597
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  19891647 tatttttatcattatcaagtatttaaaattaaataccacaatttaaacact 19891597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 19896904 - 19896954
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  19896904 tatttttatcattatcaaatatttaaaattaaataccgcaatttaaacact 19896954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 29678632 - 29678682
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  29678632 tatttttatcattatcaaatatttaaaattaaataccgcaatttaaacact 29678682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 393
Target Start/End: Complemental strand, 40846791 - 40846674
Alignment:
Q  271 ttatcacaaccaacataaactaaaattatagaatgtgatattcatgtacaaaaaagtataagtaactattagtatttttatcattataaaatatttaaaa 370  Q
    |||||||||||| ||||||||||| |||||| | ||||||||||   | |||||  || || | |||||||   ||||||| ||||| || |||||||||    
T  40846791 ttatcacaaccatcataaactaaatttataggaagtgatattcacaaataaaaa--taaaaattactatta---tttttattattatcaagtatttaaaa 40846697  T
Q  371 ttaaataccacaatttaatcact 393  Q
    |||||||||||||||||| ||||    
T  40846696 ttaaataccacaatttaaacact 40846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 18345372 - 18345420
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  18345372 tttttatcattattaagtatttaaaattaaataccacaatttaaacact 18345420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 17968106 - 17968055
Alignment:
Q  343 tatttttatcattataaaa-tatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  17968106 tatttttatcattatcaaagtatttaaaattaaataccacaatttaaacact 17968055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 17974493 - 17974442
Alignment:
Q  343 tatttttatcattataaaa-tatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  17974493 tatttttatcattatcaaagtatttaaaattaaataccacaatttaaacact 17974442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 12797883 - 12797933
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  12797883 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 12797933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 25477431 - 25477381
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  25477431 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 25477381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 25496526 - 25496476
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||| |||||||| ||||    
T  25496526 tatttttatcattatcaagtatttaaaattaaataccgcaatttaaacact 25496476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 30651868 - 30651918
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||| ||||    
T  30651868 tatttttatcactatcaagtatttaaaattaaataccacaatttaaacact 30651918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 9179869 - 9179820
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||| |||||||||||||||||| ||||    
T  9179869 tatttttatcattatcaagtatttaaa-ttaaataccacaatttaaacact 9179820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 9184560 - 9184511
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||| |||||||||||||||||| ||||    
T  9184560 tatttttatcattatcaagtatttaaa-ttaaataccacaatttaaacact 9184511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 34495248 - 34495198
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| || |||||||||||||||||  |||||||| ||||    
T  34495248 tatttttatcattatcaagtatttaaaattaaatactgcaatttaaacact 34495198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 1934133 - 1934093
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaa 383  Q
    ||||||||||| ||| || ||||||||||||||||||||||    
T  1934133 tatttttatcactatcaagtatttaaaattaaataccacaa 1934093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 23853644 - 23853596
Alignment:
Q  251 actcaattggaatctcaattttatcacaaccaacataaactaaaattat 299  Q
    ||||||||||| | ||||| |||||| || |||||||||||||||||||    
T  23853644 actcaattggattttcaatcttatcataaacaacataaactaaaattat 23853596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 24537165 - 24537129
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaatacc 379  Q
    ||||||||||||||| || ||||||||||||||||||    
T  24537165 tatttttatcattatcaagtatttaaaattaaatacc 24537129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 6186 - 6231
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaa 388  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  6186 tatttttatcattatcaagtatttaaaattaaataccacaatttaa 6231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 8065 - 8113
Alignment:
Q  345 tttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  8065 tttttatcattatcaagtatttaaaattaaataccacaatttaaacact 8113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 36076 - 36126
Alignment:
Q  343 tatttttatcattataaaatatttaaaattaaataccacaatttaatcact 393  Q
    ||||||||||||||| ||||||||||||||||||||| || ||||| ||||    
T  36076 tatttttatcattatcaaatatttaaaattaaataccgcagtttaaacact 36126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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