View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_7 (Length: 407)
Name: NF2228_low_7
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 40639117 - 40639495
Alignment:
| Q |
13 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaacgagacacgcacaaccttgatcaataacaccacgacggagcaaattatctt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40639117 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaaccagacacgcacaaccttgatcaataacaccacgacggagcaaattatctt |
40639216 |
T |
|
| Q |
113 |
ttgtgggtaggctgtcgcgaaaaaaataattataatattttttattataagtcacttnnnnnnnnnnggttaatatcatgaactttgagaggctgcatcc |
212 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
40639217 |
ttgtggatagcctgtcgcgaaaaaaataattataatattttttattataagtcacttaaaaaaaaatggttaatatgatgaactttgagaggctgcatcc |
40639316 |
T |
|
| Q |
213 |
tcccataatgtttcactttagttaatatcattgaatcttgaaacctcaattgaccctttcacaatcctcacttccatattcacattccgcccatacaaat |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40639317 |
tcccataatgtttcactttagttaatatcattgaatcttgaaacctcaattgaccctttcacaatcctcacttccatattcacattccgcccatacaaat |
40639416 |
T |
|
| Q |
313 |
ccaatattcaactctttcattcagcgcctccacccgaaatctaaatcctacacaacacatattgtgactctagtccacc |
391 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40639417 |
ccaatattcaacactttcattcagcgcctccacccgaaatctaaatcctacacaacacatattgtgactctagtccacc |
40639495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 20947893 - 20947844
Alignment:
| Q |
13 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaac |
62 |
Q |
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|||||||||||| | ||||||||||||||| |||||||| |||||||||| |
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| T |
20947893 |
aaaattacaatgaagaaataaatgatttgaagattccaaagagccacaac |
20947844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 7824446 - 7824559
Alignment:
| Q |
13 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaacgagacacgcacaaccttga-------tcaataacaccacgacggagcaaa |
105 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||| |||||||||| || || || | ||| || ||||||||||||||||||| |||| |
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| T |
7824446 |
aaaattacaatgtaaaaacaaatgatttgaagattccaaagagccacaaccagcgacacatagcctggatgtttcgtcaataacaccacgacggaacaaa |
7824545 |
T |
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| Q |
106 |
ttatcttttgtggg |
119 |
Q |
| |
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|||||||||||||| |
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|
| T |
7824546 |
ttatcttttgtggg |
7824559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 32197131 - 32197244
Alignment:
| Q |
13 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaacgagacacgcacaacct-------tgatcaataacaccacgacggagcaaa |
105 |
Q |
| |
|
||||||||||||||||||||| || | || |||||||| || ||||||| |||||| |||||||| ||||||||||| ||||||||||| ||| |
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|
| T |
32197131 |
aaaattacaatgtaaaaataagtgttgagacgattccaacgatccacaaccagacacacacaacctggatgcttgatcaataacgccacgacggagtaaa |
32197230 |
T |
|
| Q |
106 |
ttatcttttgtggg |
119 |
Q |
| |
|
|||||||||||||| |
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|
| T |
32197231 |
ttatcttttgtggg |
32197244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 4740784 - 4740719
Alignment:
| Q |
13 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaacgagacacgcacaacct |
78 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||| ||||||||| |||||| |||||||| |
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|
| T |
4740784 |
aaaattacaatgtaaaaataagtgttgagatgattccaacgagccacaatcagacacacacaacct |
4740719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 119
Target Start/End: Original strand, 30722903 - 30722938
Alignment:
| Q |
84 |
aataacaccacgacggagcaaattatcttttgtggg |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
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|
| T |
30722903 |
aataacaccacgacggaacaaattatcttttgtggg |
30722938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 704835 - 704867
Alignment:
| Q |
19 |
acaatgtaaaaataaatgatttgatgattccaa |
51 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
704835 |
acaatgtaagaataaatgatttgatgattccaa |
704867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 26260532 - 26260498
Alignment:
| Q |
16 |
attacaatgtaaaaataaatgatttgatgattcca |
50 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
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| T |
26260532 |
attacaatgtaagaataaatgatttgatgattcca |
26260498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27364069 - 27364118
Alignment:
| Q |
13 |
aaaattacaatgtaaaaataaatgatttgatgattccaaggagccacaac |
62 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||| |||||||||| |
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|
| T |
27364069 |
aaaattacaattaagaaataaatgatttgaagattccaaagagccacaac |
27364118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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