View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2228_low_8 (Length: 400)
Name: NF2228_low_8
Description: NF2228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2228_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 15449623 - 15449989
Alignment:
| Q |
19 |
aaaggatggggtgtgagatcagagaatgcaattccttctggaaattttatttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaaagg |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449623 |
aaaggatggggtgtgagatctgagaatgcaattccttctggaaattttatttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaaagg |
15449722 |
T |
|
| Q |
119 |
ttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaagaggattcatatatggttgatagtaaggagatgag |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15449723 |
ttgataatgatgagtatttatttaatattggaaattatattcacaaggtctatagttcatgggaagaggattcatatatggttgatagtaaggagatgag |
15449822 |
T |
|
| Q |
219 |
ttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgag |
318 |
Q |
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|||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15449823 |
ttcatatcaacccttagaagtttcaggcggtaaatagttcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgtg |
15449922 |
T |
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| Q |
319 |
gcaaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15449923 |
gcaaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacgatgatgatg |
15449989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 15488497 - 15488867
Alignment:
| Q |
19 |
aaaggatggggtgtgagatcagagaatgcaattccttctggaaattttat---ttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15488497 |
aaaggatggggtgtgagatcagagaatgcaattccttctggaaattttattatttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaa |
15488596 |
T |
|
| Q |
116 |
aggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaagaggattcatatatggttgatagtaaggagat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15488597 |
aggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaagaggattcatatgtggttgatagtaaggagat |
15488696 |
T |
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| Q |
216 |
gagttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaac |
315 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15488697 |
gagttcatatcaacccttagaagcttcgggcggtaaagagggcgttgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaac |
15488796 |
T |
|
| Q |
316 |
gaggcaaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatgt |
386 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
15488797 |
gtggcaaggtttatcaaccatagttgttctcccaatttgtttgttcgaaatgttctttacgatgatgatgt |
15488867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 15430102 - 15430472
Alignment:
| Q |
19 |
aaaggatggggtgtgagatcagagaatgcaattccttctggaaattttat---ttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15430102 |
aaaggatggggtgtgagatcagagaatgcaattccttctggaaattttattatttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaa |
15430201 |
T |
|
| Q |
116 |
aggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaagaggattcatatatggttgatagtaaggagat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15430202 |
aggttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaagaggattcatatgtggttgatagtaaggagat |
15430301 |
T |
|
| Q |
216 |
gagttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaac |
315 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15430302 |
gaattcatatcaacccttagaagcttcgggcggtaaagagggcgttgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaac |
15430401 |
T |
|
| Q |
316 |
gaggcaaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatgt |
386 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
15430402 |
gtggcaaggtttatcaaccatagttgttctcccaatttgtttgttcgaaatgttctttacgatgatgatgt |
15430472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 16943194 - 16943561
Alignment:
| Q |
19 |
aaaggatggggtgtgagatcagagaatgcaattccttctggaaattttatttgtgagtatttaggtgagattattgaagatgaggaagctttgaaaaagg |
118 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |
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| T |
16943194 |
aaaggatggggtgtaaggtcagagaatgcaattccttctggaaattttatttgtgagtatataggtgagattattgaagatgaggaagctttgaagatag |
16943293 |
T |
|
| Q |
119 |
ttgataatgatgagtatttatttaatattggcaattatattcacaaggtctatagttcatgggaagaggattcatatatggttgatagtaaggagatgag |
218 |
Q |
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||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16943294 |
ttgatgatgatgagtaattatttaatattgtcgattatattcacaaggtctatagttcaagggaagaggattcatatatggttgatagtaaggagatgag |
16943393 |
T |
|
| Q |
219 |
ttcatatcaacccttagaagcttcaggcggtaaagaggtcattgatgatcgatgtgatagtggtaggtttaccattgatgctgctaagtatggtaacgag |
318 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | |
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| T |
16943394 |
ttcatatcaacccgtagaagcttcaggcagtaaagaggtcattgatgatcgatgtgatagtggtaggtttaacattgatgccgctaagtatggtaacgtg |
16943493 |
T |
|
| Q |
319 |
gcaaggtttatcaaccatagttgttctcccaatttgtttgctcgaaatgttctttacggtgatgatgt |
386 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
16943494 |
ggaaggtttatcaaccatagttgctctcccaatttgtttgctcgaaatgttctttacgatgatgatgt |
16943561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 15540805 - 15540843
Alignment:
| Q |
19 |
aaaggatggggtgtgagatcagagaatgcaattccttct |
57 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
15540805 |
aaaggatggggtgtgagatcagagaatgcaattccttct |
15540843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 22475668 - 22475708
Alignment:
| Q |
318 |
ggcaaggtttatcaaccatagttgttctcccaatttgtttg |
358 |
Q |
| |
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|||||| |||||||| |||||||||||||| |||||||||| |
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| T |
22475668 |
ggcaagatttatcaatcatagttgttctcctaatttgtttg |
22475708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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