View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_high_10 (Length: 250)
Name: NF2229_high_10
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 25884987 - 25885227
Alignment:
| Q |
10 |
gcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggatt |
109 |
Q |
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| T |
25884987 |
gcaaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggatt |
25885086 |
T |
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| Q |
110 |
cacgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcga |
209 |
Q |
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| T |
25885087 |
cacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcga |
25885186 |
T |
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| Q |
210 |
atcgcgacttgtcatcatctgaaactgaaagttgttactac |
250 |
Q |
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| T |
25885187 |
atcgcgacttgtcatcatctgaaactgaaagttgttactac |
25885227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 14320306 - 14320531
Alignment:
| Q |
11 |
caaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattc |
110 |
Q |
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|||||||||||||||||||| ||||||| |||| | ||||||||| | |||||| ||||||||||||| ||||||| |||||||||||||||| | ||| |
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| T |
14320306 |
caaaggtaagaacagttacagctaatggggcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttc |
14320405 |
T |
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| Q |
111 |
acgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaa |
210 |
Q |
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| T |
14320406 |
gcgaaactgttgaattttgttaccaaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaa |
14320505 |
T |
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| Q |
211 |
tcgcgacttgtcatcatctgaaactg |
236 |
Q |
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| T |
14320506 |
tcgcggctcgtcattatcttaaactg |
14320531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 14282206 - 14282385
Alignment:
| Q |
60 |
gttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaac |
159 |
Q |
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| T |
14282206 |
gttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttaccgaagtactcttcccacgcttgaaac |
14282305 |
T |
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| Q |
160 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaa |
239 |
Q |
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| T |
14282306 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaa |
14282385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 14303915 - 14304143
Alignment:
| Q |
11 |
caaaggtaagaacagttacaactaatggtgcagcagacaaaactccaaagttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattc |
110 |
Q |
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|||| ||||||||||||| | |||| || | || || ||||||||| | ||| |||||||||||||||| ||||||||||||||||||||| |||| ||| |
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| T |
14303915 |
caaatgtaagaacagttatagctaaaggagaagtagtcaaaactcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttc |
14304014 |
T |
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| Q |
111 |
acgaaattgtttaatcttgttaccgaaatactcttcccaagcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaa |
210 |
Q |
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|||||| |||| ||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| || | |||||| |||||| |
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| T |
14304015 |
acgaaactgttgaatcttgttcccgaagtactcttcccacgcttgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaa |
14304114 |
T |
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| Q |
211 |
tcgcgacttgtcatcatctgaaactgaaa |
239 |
Q |
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| T |
14304115 |
tcgcggctcatcattatccgaaactgaaa |
14304143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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