View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_high_17 (Length: 236)
Name: NF2229_high_17
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 4304063 - 4303844
Alignment:
| Q |
17 |
tattcaaccttctcagctcaacaacttcaagctcaagattctgcgtcgaaccatccttatcttcctcttgtctctccaatccacagctcctactcaatgc |
116 |
Q |
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| T |
4304063 |
tattcaaccttctcagctcaacaacttcaagctcaagattctgcgttgaaccatccttatcttcctcttgtctctccaatccacagctcctactcaatgc |
4303964 |
T |
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| Q |
117 |
aaccaattgctcagaaagaccacttttctcttcttccaacaaagcaactttcttcacaagctcatcaacctcactctgattcttcctacactcaaccaac |
216 |
Q |
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| T |
4303963 |
aaccaattgctcagaaagaccacttttctcttcttccaacaaagcaactttcttcacaagctcatcaacctcactctgattcttcctacactcaaccaac |
4303864 |
T |
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| Q |
217 |
tcagcattcaacttggcctc |
236 |
Q |
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| T |
4303863 |
tcagcattcaacttggcctc |
4303844 |
T |
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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 40770948 - 40771147
Alignment:
| Q |
17 |
tattcaaccttctcagctcaacaacttcaagctcaagattctgcgtcgaaccatccttat---------------cttcctcttgtctctccaatccaca |
101 |
Q |
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| T |
40770948 |
tattcaaccttctcaacccaacaacttcaagcacaagattctgcatcaaacaatccttattttcccccttcaccacttcctcttgtctttccaatccaca |
40771047 |
T |
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| Q |
102 |
gctcctactcaatgcaaccaattgctcagaaagaccacttttctcttcttccaacaaagcaactttcttcacaagctcatcaacctcactctgattcttc |
201 |
Q |
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| T |
40771048 |
gctcctactcaatgcagccgattgctcagagaggctggttttctcttct---aacaaagcaactttcttctcaagctcatcaacctcattctgattcttc |
40771144 |
T |
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