View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_high_8 (Length: 271)
Name: NF2229_high_8
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_high_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 55178095 - 55178348
Alignment:
| Q |
18 |
catccttgatcttacctatatccattatttccaatttcatcagtaaataatatatcatatccactttctagtgtatatatactaattctatttttaatta |
117 |
Q |
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| T |
55178095 |
catccttgttcttacctatatccattatttccaatttcatcagtaaataatatatcatatccactttctagtgtatatatactaattctatttttaatta |
55178194 |
T |
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| Q |
118 |
attacattcaattttgtaacttccatttttatcagaaaagcatttagtgtgtacaggctagtagttacaatgataagtgaaaagagaagaaatattagta |
217 |
Q |
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| T |
55178195 |
attacattcaattttgtaacttccatttttatcagaaaagcatttagtgtgtacaggctagtagttacaatgataagtgaaaagagaagaaatattagta |
55178294 |
T |
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| Q |
218 |
ggactaaccgcgtagattttggtctaaggttccttgggggaaataatcataaac |
271 |
Q |
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| T |
55178295 |
ggactaaccgcgtagattttggtctaaggttccttgggggaaataatcataaac |
55178348 |
T |
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