View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_14 (Length: 252)
Name: NF2229_low_14
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4303862 - 4303626
Alignment:
| Q |
1 |
cagcattcaacttggcctctctctccttagactcttgtaacaagcttctcatatgatccaactccgtgaacaaatcagttgaagattgtctcctatgtgt |
100 |
Q |
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| T |
4303862 |
cagcattcaacttggcctctctctccttagactcttgtaacaagcttctcatatgatctaactccgtgaacaaatcagttgaagattgtctcctatgtgt |
4303763 |
T |
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| Q |
101 |
tggaaaagcatgtggatgaacctgagaacatgacaaatcacccattaacgatcttttcactcttgaatgaggtggaacgaaagggttaacgtttttctgg |
200 |
Q |
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| T |
4303762 |
tggaaaagcatgtggatgaacctgagaacatgacaaatcacccattaacgatcttttcactcttgaatgaggtggaacgaaagggttaacgtttttctgg |
4303663 |
T |
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| Q |
201 |
ttagtaacaacatccgaggttgttattgttgttgtat |
237 |
Q |
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| T |
4303662 |
ttagtaacaacatccgaggttgttattgttgttgtat |
4303626 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 40771930 - 40772001
Alignment:
| Q |
57 |
tccaactccgtgaacaaatcagttgaagattgtctcctatgtgttggaaaagcatgtggatgaacctgagaa |
128 |
Q |
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| T |
40771930 |
tccaacgccgtgaacaaatctgtgggtgattgtctcctatgtgttgtaaaaacatgtgggtgaacctgagaa |
40772001 |
T |
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