View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_18 (Length: 245)
Name: NF2229_low_18
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 25885268 - 25885497
Alignment:
| Q |
1 |
tccaagcaatgctgcaagtactgatacaccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885268 |
tccaagcaatgctgcaagtactgatacaccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgc |
25885367 |
T |
|
| Q |
101 |
atcatcatatctgagagttgttgagcatcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885368 |
atcatcatatctgagagttgttgagcatcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccct |
25885467 |
T |
|
| Q |
201 |
ttttgtaaaccgaagtaattatgctcgaac |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
25885468 |
ttttgtaaaccgaagtaattatgctcgaac |
25885497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 44349163 - 44349342
Alignment:
| Q |
51 |
ccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcatcaacagccatgtgattcactat |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44349163 |
ccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcatcaacagacatgtgattcactat |
44349262 |
T |
|
| Q |
151 |
ctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaaccgaagtaattatgctcgaac |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||| |
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| T |
44349263 |
ctgtcctgttccatgagcttgtcttgaagaacttgacaatcttagaccctttttgtaaaccaaagtgattatgctcgaac |
44349342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 14320586 - 14320815
Alignment:
| Q |
1 |
tccaagcaatgctgcaagtactgatacaccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgc |
100 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||| |||| |||| |
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| T |
14320586 |
tccaaacactgctgcaagtactgatagaccaacatagctgtacataagagccaatgcagcaccaacttgcaatggcatcaaccatataggatgaaactgc |
14320685 |
T |
|
| Q |
101 |
atcatcatatctgagagttgttgagcatcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccct |
200 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||| || || || || ||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
14320686 |
atcatcaaatctgagagctgttgagcatcaacagccatgtgattaacaatttggccagttccatgagcttgtcttgaagaacttgacaaccttaaaccct |
14320785 |
T |
|
| Q |
201 |
ttttgtaaaccgaagtaattatgctcgaac |
230 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |
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| T |
14320786 |
ttttgtaaactgaagtgattatgctcgaac |
14320815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 14304204 - 14304422
Alignment:
| Q |
10 |
tgctgcaagtactgatacaccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcata |
109 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| | || ||||| |||||||||| ||| ||||| |||| |||| |||||| |
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| T |
14304204 |
tgctgcaacgacagatacaccaacatagctatacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaag |
14304303 |
T |
|
| Q |
110 |
tctgagagttgttgagcatcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||| |
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| T |
14304304 |
tctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcctgtcttgaagaacttgacaaccttaaaccctttttgtaaa |
14304403 |
T |
|
| Q |
210 |
ccgaagtaattatgctcga |
228 |
Q |
| |
|
||||||| ||||||||||| |
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| T |
14304404 |
ccgaagtgattatgctcga |
14304422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 14282465 - 14282666
Alignment:
| Q |
29 |
ccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcat |
128 |
Q |
| |
|
|||||||||||||||| |||| |||||| | | |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| |
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| T |
14282465 |
ccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagttgttgagcat |
14282564 |
T |
|
| Q |
129 |
caacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaaccgaagtaattatgctcga |
228 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
14282565 |
caacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgctcga |
14282664 |
T |
|
| Q |
229 |
ac |
230 |
Q |
| |
|
|| |
|
|
| T |
14282665 |
ac |
14282666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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