View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_19 (Length: 243)
Name: NF2229_low_19
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30551935 - 30551698
Alignment:
| Q |
1 |
ccaagtttttccattctatcctttttatcttcatcaacaacaatcacaacagaagcattacgaattgaggacgaatcacacagaacgatgtcttgttcaa |
100 |
Q |
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| T |
30551935 |
ccaagtttttccattctatcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacatagaacaatgtcttgttcaa |
30551836 |
T |
|
| Q |
101 |
gatcgccctcatacgagaaatctgttaggcgttgactataaactttaatggcatatttacacgattcatttgaatgatggttccatattgctattgaaaa |
200 |
Q |
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|||| |||||||| | ||||||||||| |||| |||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
30551835 |
gatcaccctcataagcgaaatctgttaagcgtcgactataaaccttgatggcatatttacttgatttatttgaatgatggttccatattgctattgaaaa |
30551736 |
T |
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| Q |
201 |
cttctcaagtaacggtacttgtaagctaatgttctgtg |
238 |
Q |
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| T |
30551735 |
cttctcaagtacaggtacttgtaaactaatgttttgtg |
30551698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30560603 - 30560366
Alignment:
| Q |
1 |
ccaagtttttccattctatcctttttatcttcatcaacaacaatcacaacagaagcattacgaattgaggacgaatcacacagaacgatgtcttgttcaa |
100 |
Q |
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||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| || || |||||||||||||| || || ||||||| |
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| T |
30560603 |
ccaagttcttccattctgttctttttatcttcatcaacaacaatcacaacagaagcaatacgaacagacgatgaatcacacagaacaatatcctgttcaa |
30560504 |
T |
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| Q |
101 |
gatcgccctcatacgagaaatctgttaggcgttgactataaactttaatggcatatttacacgattcatttgaatgatggttccatattgctattgaaaa |
200 |
Q |
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|||| |||||||| |||||||| |||||| || ||||||||||||| |||||| ||||| ||| || |||||||||| |||||||||||||||| ||||| |
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| T |
30560503 |
gatcaccctcataagagaaatccgttaggtgtggactataaactttgatggcaaatttaaacgctttatttgaatgacggttccatattgctatggaaaa |
30560404 |
T |
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| Q |
201 |
cttctcaagtaacggtacttgtaagctaatgttctgtg |
238 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| |
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| T |
30560403 |
cttctcaagtaaaggtacttgtaaactaatgttctgtg |
30560366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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