View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_2 (Length: 442)
Name: NF2229_low_2
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 38816584 - 38816155
Alignment:
| Q |
1 |
tatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatct |
100 |
Q |
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| T |
38816584 |
tatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatct |
38816485 |
T |
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| Q |
101 |
tgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaa |
200 |
Q |
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| T |
38816484 |
tgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaa |
38816385 |
T |
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| Q |
201 |
ccttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgac |
300 |
Q |
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| T |
38816384 |
ccttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgac |
38816285 |
T |
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| Q |
301 |
tttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctt |
400 |
Q |
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| T |
38816284 |
tttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttctt |
38816185 |
T |
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| Q |
401 |
tcactgagttatgataattgtgcatgtgat |
430 |
Q |
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| T |
38816184 |
tcactgagttatgataattgtgcatgtgat |
38816155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
68 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
167 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
168 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
217 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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