View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_24 (Length: 231)
Name: NF2229_low_24
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 1538784 - 1538585
Alignment:
| Q |
18 |
ataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccaccaaaactattgaagga |
117 |
Q |
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| T |
1538784 |
ataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccaccaaaactattgaagga |
1538685 |
T |
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| Q |
118 |
ggtagtatgagaagaaattatgtgctgtgttaatttcgaagacaatgaaccttcaagnnnnnnngattggcagacatctgaaacatcttttcaacctttg |
217 |
Q |
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| T |
1538684 |
ggtcgtatgagaagaaattatgtgctctgttaatttcgaagacaatgaaccttcaagtttttttgattggcagacatctgaaacatcttttcaacctttg |
1538585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 17768831 - 17768632
Alignment:
| Q |
18 |
ataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccaccaaaactattgaagga |
117 |
Q |
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| T |
17768831 |
ataaagtttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccaccaaaactattgaagga |
17768732 |
T |
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| Q |
118 |
ggtagtatgagaagaaattatgtgctgtgttaatttcgaagacaatgaaccttcaagnnnnnnngattggcagacatctgaaacatcttttcaacctttg |
217 |
Q |
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| T |
17768731 |
ggtcgtatgagaagaaattatgtgctctgttaatttcgaagacaatgaaccttcaagtttttttgattggcagacatctgaaacatcttttcaacctttg |
17768632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 44178407 - 44178329
Alignment:
| Q |
25 |
ttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccacca |
103 |
Q |
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|||||||| ||||||||| | |||| ||||||||| | ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
44178407 |
ttcgaaagctggagaggtcccggttagattaactcgcgcacgagctgctgctttaagtgcaactggacagttgccacca |
44178329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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