View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2229_low_26 (Length: 214)
Name: NF2229_low_26
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 41813335 - 41813519
Alignment:
| Q |
16 |
aatataaattaacaaagatgagaagagacacgacaacgcttcagagtttagacaataataaa----gctgtccaaacaattagcttataatttcgttaga |
111 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||||||||||| || |||||||||| || | || |||||||||||||||| |||||||||||| |
|
|
| T |
41813335 |
aatataaactaataaagatgagaagagacatgacaacgcttcagaattcagacaataattaattaaggtgcccaaacaattagcttacaatttcgttaga |
41813434 |
T |
|
| Q |
112 |
atatttgtacaagtattgtcctcatgaaagagtgtgatgaagagagaaaaattgcaatcattcttcacgtactttatgataatttt |
197 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
41813435 |
atatttgtacaactattgtcctcatg-aagagtgtgatgaagagagaaaaattgcaatctttcttcacgtactttgtgatgatttt |
41813519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University