View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_27 (Length: 213)
Name: NF2229_low_27
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 4684295 - 4684209
Alignment:
| Q |
114 |
ctcttgatgtgttatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
200 |
Q |
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| T |
4684295 |
ctcttgatgtgctatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
4684209 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 1656493 - 1656579
Alignment:
| Q |
114 |
ctcttgatgtgttatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
200 |
Q |
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| T |
1656493 |
ctcttgatgtgctatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
1656579 |
T |
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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 31334060 - 31333974
Alignment:
| Q |
114 |
ctcttgatgtgttatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
200 |
Q |
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| T |
31334060 |
ctcttgatgtgctatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
31333974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 31340790 - 31340704
Alignment:
| Q |
114 |
ctcttgatgtgttatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
200 |
Q |
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| T |
31340790 |
ctcttgatgtgctatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
31340704 |
T |
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Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 643821 - 643907
Alignment:
| Q |
114 |
ctcttgatgtgttatgctttgctctgtggggaagatatactcatgaggaaattattccgtccgctgcttaatatcttattaaaaact |
200 |
Q |
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| T |
643821 |
ctcttcatgtgctatgctttgctctatggggaagatatactcatgaggaaattatgtcgtccgctgctcaatatcttattaaaaact |
643907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 643547 - 643640
Alignment:
| Q |
6 |
ggaggagcagagagagtttggtggattagtggaggagaatagagaaaatgatggggctagaaattcagactt-aatcttaagcatttcctattg |
98 |
Q |
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| T |
643547 |
ggaggagaaaagggagtttggtggattaatggaggagaacagagaaaacgatggggctagaaattcagacttaaatcttaagcatttgctattg |
643640 |
T |
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