View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2229_low_5 (Length: 348)
Name: NF2229_low_5
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2229_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 17725012 - 17724880
Alignment:
| Q |
1 |
aaagtaccacaccaatcaacataaatcaattcaacagttctttcatgtcgaccaaaattatgcaatgatccaaacagaaaaattgattatcaagcatcat |
100 |
Q |
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| T |
17725012 |
aaagttccacaccaatcaacatatatcaattcaacagttcttccatgtcgaccaaaattatgcaatgatccaaacacaaaaattgacaatcaagcatcat |
17724913 |
T |
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| Q |
101 |
gagaatgttgcactacattccaaaattttacat |
133 |
Q |
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| T |
17724912 |
gagaatgttgcactacattccaaaattttacat |
17724880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 17724777 - 17724672
Alignment:
| Q |
235 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttccgccgaaataaccgatcctttttatatacaacagtttcac |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17724777 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttctgccgaaataaccgatcctttttatatacaacagtttcac |
17724678 |
T |
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| Q |
335 |
aggttc |
340 |
Q |
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||||| |
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| T |
17724677 |
cggttc |
17724672 |
T |
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