View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2229_low_8 (Length: 306)

Name: NF2229_low_8
Description: NF2229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2229_low_8
NF2229_low_8
[»] chr4 (26 HSPs)
chr4 (19-296)||(43188608-43188879)
chr4 (20-74)||(1116080-1116134)
chr4 (248-292)||(5654606-5654650)
chr4 (248-296)||(18513256-18513304)
chr4 (248-292)||(7012066-7012110)
chr4 (248-292)||(10546148-10546192)
chr4 (248-295)||(43300613-43300660)
chr4 (255-297)||(14465316-14465358)
chr4 (248-294)||(43299986-43300032)
chr4 (246-292)||(51673455-51673501)
chr4 (260-293)||(41297390-41297423)
chr4 (246-290)||(8457927-8457971)
chr4 (248-292)||(20743293-20743337)
chr4 (248-292)||(31243563-31243607)
chr4 (248-292)||(34589721-34589765)
chr4 (257-292)||(32910551-32910586)
chr4 (245-292)||(37496704-37496751)
chr4 (243-289)||(10634993-10635039)
chr4 (245-278)||(13307891-13307924)
chr4 (253-286)||(19230329-19230362)
chr4 (253-282)||(26276029-26276058)
chr4 (256-285)||(48845148-48845177)
chr4 (248-284)||(2976702-2976738)
chr4 (253-289)||(12077831-12077867)
chr4 (246-286)||(20119951-20119991)
chr4 (257-289)||(24846802-24846834)
[»] chr7 (25 HSPs)
chr7 (246-287)||(44172903-44172944)
chr7 (248-292)||(38134421-38134465)
chr7 (248-289)||(21247751-21247792)
chr7 (248-284)||(7546168-7546204)
chr7 (246-292)||(36013811-36013858)
chr7 (248-291)||(36314642-36314685)
chr7 (253-292)||(41360910-41360949)
chr7 (245-291)||(5937433-5937479)
chr7 (257-291)||(12278836-12278870)
chr7 (246-292)||(35238197-35238243)
chr7 (253-295)||(44020972-44021014)
chr7 (255-292)||(2525866-2525903)
chr7 (259-292)||(16341496-16341529)
chr7 (248-285)||(16809864-16809901)
chr7 (246-291)||(28515027-28515071)
chr7 (240-285)||(48438460-48438505)
chr7 (247-280)||(48581996-48582029)
chr7 (246-278)||(2143866-2143898)
chr7 (246-278)||(2144552-2144584)
chr7 (248-292)||(7133293-7133337)
chr7 (250-286)||(23165405-23165441)
chr7 (248-292)||(23930219-23930263)
chr7 (248-292)||(28943429-28943473)
chr7 (246-286)||(31808522-31808562)
chr7 (260-292)||(43249993-43250025)
[»] chr1 (15 HSPs)
chr1 (248-292)||(11412783-11412827)
chr1 (253-292)||(40747793-40747832)
chr1 (248-285)||(3921674-3921711)
chr1 (253-286)||(11571591-11571624)
chr1 (259-296)||(42004973-42005010)
chr1 (248-292)||(7988466-7988510)
chr1 (248-292)||(30847735-30847779)
chr1 (257-296)||(40181867-40181906)
chr1 (246-280)||(14332420-14332454)
chr1 (246-292)||(26462658-26462704)
chr1 (257-291)||(42325561-42325595)
chr1 (246-291)||(31667426-31667471)
chr1 (246-287)||(43609831-43609872)
chr1 (248-292)||(19637768-19637812)
chr1 (257-289)||(29415751-29415783)
[»] scaffold0571 (1 HSPs)
scaffold0571 (254-289)||(7693-7728)
[»] chr8 (24 HSPs)
chr8 (253-292)||(34201066-34201105)
chr8 (248-288)||(3508056-3508096)
chr8 (248-284)||(29198494-29198530)
chr8 (257-292)||(30068052-30068087)
chr8 (253-292)||(31236597-31236636)
chr8 (254-292)||(5307061-5307098)
chr8 (248-294)||(12985390-12985436)
chr8 (246-292)||(31548306-31548352)
chr8 (253-282)||(10441213-10441242)
chr8 (259-296)||(14731708-14731745)
chr8 (245-278)||(31119101-31119134)
chr8 (253-286)||(34739081-34739114)
chr8 (248-285)||(37225758-37225795)
chr8 (248-285)||(40063958-40063995)
chr8 (245-278)||(42874536-42874569)
chr8 (253-285)||(1639497-1639529)
chr8 (253-281)||(3520105-3520133)
chr8 (248-288)||(7616864-7616904)
chr8 (255-291)||(8798853-8798889)
chr8 (253-285)||(14227229-14227261)
chr8 (253-285)||(14740737-14740769)
chr8 (236-292)||(26915243-26915299)
chr8 (257-285)||(28883902-28883930)
chr8 (260-292)||(44067516-44067548)
[»] chr6 (23 HSPs)
chr6 (253-292)||(2140501-2140540)
chr6 (246-288)||(33135249-33135291)
chr6 (248-292)||(34446565-34446609)
chr6 (246-285)||(4859126-4859165)
chr6 (245-292)||(10031570-10031617)
chr6 (246-281)||(10157995-10158030)
chr6 (253-292)||(17168894-17168933)
chr6 (245-292)||(19369817-19369864)
chr6 (248-291)||(19602196-19602239)
chr6 (253-288)||(32299279-32299314)
chr6 (248-282)||(9024191-9024225)
chr6 (262-292)||(10760870-10760900)
chr6 (254-292)||(33135832-33135870)
chr6 (253-286)||(6299518-6299551)
chr6 (253-286)||(6306328-6306361)
chr6 (245-278)||(6751894-6751927)
chr6 (259-292)||(13211307-13211340)
chr6 (248-285)||(29049892-29049929)
chr6 (257-286)||(29711268-29711297)
chr6 (248-292)||(12235534-12235578)
chr6 (259-291)||(17168489-17168521)
chr6 (253-285)||(33076415-33076447)
chr6 (248-292)||(33135178-33135221)
[»] chr5 (19 HSPs)
chr5 (253-292)||(28296328-28296367)
chr5 (245-292)||(30080513-30080560)
chr5 (253-292)||(32428946-32428985)
chr5 (248-286)||(11596470-11596508)
chr5 (253-292)||(38749583-38749622)
chr5 (248-291)||(43208289-43208332)
chr5 (248-286)||(18607112-18607150)
chr5 (258-292)||(37472622-37472656)
chr5 (259-292)||(2577206-2577239)
chr5 (257-294)||(18162053-18162090)
chr5 (256-285)||(41558706-41558735)
chr5 (248-284)||(2039864-2039900)
chr5 (248-292)||(2419857-2419901)
chr5 (248-292)||(4344742-4344786)
chr5 (253-285)||(9449476-9449508)
chr5 (259-291)||(18919048-18919080)
chr5 (254-286)||(19737503-19737535)
chr5 (248-284)||(31264446-31264482)
chr5 (253-285)||(39424648-39424680)
[»] chr2 (21 HSPs)
chr2 (233-292)||(10535759-10535818)
chr2 (248-291)||(18570973-18571016)
chr2 (253-292)||(30563409-30563448)
chr2 (253-292)||(40681982-40682021)
chr2 (253-294)||(12933756-12933797)
chr2 (253-292)||(4332926-4332965)
chr2 (253-292)||(19613633-19613672)
chr2 (253-292)||(37497120-37497159)
chr2 (246-292)||(10250726-10250772)
chr2 (246-292)||(22131267-22131313)
chr2 (248-286)||(31026701-31026739)
chr2 (245-291)||(43586017-43586063)
chr2 (246-291)||(16630796-16630841)
chr2 (254-291)||(18420455-18420492)
chr2 (259-292)||(24011036-24011069)
chr2 (250-286)||(2073948-2073984)
chr2 (248-292)||(2846924-2846968)
chr2 (259-291)||(4690291-4690323)
chr2 (246-286)||(16301174-16301214)
chr2 (256-292)||(25317137-25317173)
chr2 (253-285)||(44605159-44605191)
[»] chr3 (26 HSPs)
chr3 (246-284)||(19730222-19730260)
chr3 (246-284)||(19750812-19750850)
chr3 (248-289)||(20691322-20691363)
chr3 (254-286)||(9210846-9210878)
chr3 (246-297)||(44427835-44427887)
chr3 (253-292)||(9624641-9624680)
chr3 (256-291)||(11093571-11093606)
chr3 (248-291)||(12704672-12704715)
chr3 (257-292)||(16789674-16789709)
chr3 (253-292)||(32166203-32166242)
chr3 (257-296)||(33548838-33548877)
chr3 (246-292)||(19323461-19323507)
chr3 (248-286)||(21149073-21149111)
chr3 (246-288)||(27858344-27858386)
chr3 (248-286)||(40150586-40150624)
chr3 (248-286)||(52369781-52369819)
chr3 (239-296)||(14338489-14338545)
chr3 (259-292)||(25074789-25074822)
chr3 (246-291)||(34409355-34409400)
chr3 (248-292)||(8039206-8039250)
chr3 (255-291)||(13807170-13807206)
chr3 (260-292)||(24205068-24205100)
chr3 (246-286)||(34909874-34909914)
chr3 (253-285)||(40017389-40017421)
chr3 (253-285)||(41319330-41319362)
chr3 (246-286)||(52558141-52558181)
[»] scaffold0007 (1 HSPs)
scaffold0007 (253-292)||(225288-225327)
[»] scaffold0598 (1 HSPs)
scaffold0598 (257-286)||(8077-8106)
[»] scaffold0037 (1 HSPs)
scaffold0037 (253-286)||(102911-102944)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 43188879 - 43188608
Alignment:
Q  19 agaaggcgctcatgctcctgcttttctcgcactttctagacccatcgtttctcaggtacgtaccctttcattaacaattttcatcnnnnnnnnagggatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  43188879 agaaggcgctcatgctcctgcttttctcgcactttctagacccatcgtttctcaggtacgtaccctttcattaacaattttcatcttttttttagggatt 43188780  T
Q  119 tttatcatgggttccaatagaatgcttaatagtcaatagttatgaacttttgtaacgctaacatttctgattgaatgtgtgtctgtgtctgtgtctgaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||      |||||||    
T  43188779 tttatcatgggttccaatagaatgcttaatagtcaatagttttgaacttttgtaacgctgacatttctgattgaatgtgtgtctgtg------tctgaca 43188686  T
Q  219 cgtgtcggtggtctccaacacgacttttgtgatcacattgaattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43188685 cgtgttggtggtctccaacacgacttttgtgatcgcattgaattatgtcattttctcaaattattatcagtgtctgtg 43188608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 1116080 - 1116134
Alignment:
Q  20 gaaggcgctcatgctcctgcttttctcgcactttctagacccatcgtttctcagg 74  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  1116080 gaaggcgctcatactcctgcttttcttgcactttctagacccatcgtttcccagg 1116134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 5654606 - 5654650
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  5654606 tgattacattgaattatgtcattttctcaaattattatcagtgtc 5654650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 18513256 - 18513304
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||    
T  18513256 tgattacattgaattatgtcattttctcaaattattatcggtgtctgtg 18513304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 7012110 - 7012066
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  7012110 tgatcacactgaattatgtcattttctcaaattattatcggtgtc 7012066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 10546192 - 10546148
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  10546192 tgattacattgaattatgtcattttctcaaattattatcattgtc 10546148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 43300660 - 43300613
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtctgt 295  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  43300660 tgattacattgaattatgtaattttctcaaattattatccgtgtctgt 43300613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 14465316 - 14465358
Alignment:
Q  255 attgaattatgtcattttctcaaattattatcagtgtctgtgc 297  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  14465316 attgaattatgtcattttctcaaattattatcggtgtccgtgc 14465358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 43299986 - 43300032
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtctg 294  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||    
T  43299986 tgattacattgaattatgtaattttctcaaattattatccgtgtctg 43300032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 51673455 - 51673501
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  51673455 tgtgattacaatgaattatgtcattttctccaattattatcagtgtc 51673501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 41297423 - 41297390
Alignment:
Q  260 attatgtcattttctcaaattattatcagtgtct 293  Q
    ||||||||||||||||||||||||||||||||||    
T  41297423 attatgtcattttctcaaattattatcagtgtct 41297390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 8457971 - 8457927
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtg 290  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||    
T  8457971 tgtgattacattcaattatgtcattttctcaaattattaccagtg 8457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 20743293 - 20743337
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||    
T  20743293 tgattacactgaattatgtcattttctcaaattattatccgtgtc 20743337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 31243563 - 31243607
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  31243563 tgattacactgaattatgtcattttctcaaattattataagtgtc 31243607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 34589721 - 34589765
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtc 34589765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 32910586 - 32910551
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||| |||||    
T  32910586 tgaattatgtcattttctcaaattattatccgtgtc 32910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 37496751 - 37496704
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||||    
T  37496751 ttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtc 37496704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 10635039 - 10634993
Alignment:
Q  243 ttttgtgatcacattgaattatgtcattttctcaaattattatcagt 289  Q
    ||||||||| |||||||||||||||||||| ||||| | ||||||||    
T  10635039 ttttgtgataacattgaattatgtcattttttcaaaattttatcagt 10634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 13307924 - 13307891
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaa 278  Q
    ||||||| ||||||||||||||||||||||||||    
T  13307924 ttgtgattacattgaattatgtcattttctcaaa 13307891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 19230329 - 19230362
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||||| |||||||||||||||||||    
T  19230329 acattgaattatgttattttctcaaattattatc 19230362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Original strand, 26276029 - 26276058
Alignment:
Q  253 acattgaattatgtcattttctcaaattat 282  Q
    ||||||||||||||||||||||||||||||    
T  26276029 acattgaattatgtcattttctcaaattat 26276058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 48845177 - 48845148
Alignment:
Q  256 ttgaattatgtcattttctcaaattattat 285  Q
    ||||||||||||||||||||||||||||||    
T  48845177 ttgaattatgtcattttctcaaattattat 48845148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 2976738 - 2976702
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattatta 284  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  2976738 tgattacattcaattatgtcattttctcaaattatta 2976702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 12077867 - 12077831
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagt 289  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  12077867 acattgaattatgtgattttctcaaattattaacagt 12077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 20119991 - 20119951
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  20119991 tgtgattacattaaattatttcattttctcaaattattatc 20119951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 24846802 - 24846834
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagt 289  Q
    ||||||||||||||| |||||||||||||||||    
T  24846802 tgaattatgtcatttgctcaaattattatcagt 24846834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 44172903 - 44172944
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatca 287  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  44172903 tgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 38134421 - 38134465
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| |||||||||||||||||||||||||||||||||| |||||    
T  38134421 tgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 21247751 - 21247792
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagt 289  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  21247751 tgattacattgaattacgtcattttctcaaattattatcagt 21247792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 7546204 - 7546168
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattatta 284  Q
    ||||||||||||||||||||||||| |||||||||||    
T  7546204 tgatcacattgaattatgtcattttgtcaaattatta 7546168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 36013811 - 36013858
Alignment:
Q  246 tgtgatcacattgaattatgtca-ttttctcaaattattatcagtgtc 292  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  36013811 tgtgattacattgaattatgtcatttttctcaaattattatcattgtc 36013858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 36314642 - 36314685
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||| |||||||| |||||||||||||||||||||||| |||||    
T  36314642 tgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 41360949 - 41360910
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  41360949 acattgaattatgttattttctcaaattaatatcagtgtc 41360910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 5937433 - 5937479
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    ||||||| |||||||||||||||||||||||||| | ||||| ||||    
T  5937433 ttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 12278870 - 12278836
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||||||||||||||| ||||||||||||||||    
T  12278870 tgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 35238197 - 35238243
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| | |||||||||||||||||||||||| ||||||| |||||    
T  35238197 tgtgattatattgaattatgtcattttctcaaaatattatcggtgtc 35238243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 44021014 - 44020972
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtctgt 295  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||    
T  44021014 acattgaattatgtaattttttcaaattattatccgtgtctgt 44020972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 2525866 - 2525903
Alignment:
Q  255 attgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  2525866 attgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 16341529 - 16341496
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||| |||||||||||||||||||||||||    
T  16341529 aattatgtgattttctcaaattattatcagtgtc 16341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 16809901 - 16809864
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattat 285  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  16809901 tgatcacattgaattttatcattttctcaaattattat 16809864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 28515027 - 28515071
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||| |||||||||||||||| || |||||||||||||||||||    
T  28515027 tgtgattacattgaattatgtca-ttcctcaaattattatcagtgt 28515071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 48438505 - 48438460
Alignment:
Q  240 gacttttgtgatcacattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||| |||||||||  |||||||||| |||||||||||    
T  48438505 gacttttgtgattacattgaatcgtgtcattttcccaaattattat 48438460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 48582029 - 48581996
Alignment:
Q  247 gtgatcacattgaattatgtcattttctcaaatt 280  Q
    ||||||| ||||||||||||||||||||||||||    
T  48582029 gtgatcaaattgaattatgtcattttctcaaatt 48581996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 2143866 - 2143898
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaa 278  Q
    |||||| ||||||||||||||||||||||||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaa 2143898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 2144552 - 2144584
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaa 278  Q
    |||||| ||||||||||||||||||||||||||    
T  2144552 tgtgattacattgaattatgtcattttctcaaa 2144584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 7133293 - 7133337
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| |||||||||||||||||||||||||| ||| |||||    
T  7133293 tgattacactgaattatgtcattttctcaaattatcatctgtgtc 7133337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 23165405 - 23165441
Alignment:
Q  250 atcacattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||| |||||||||||||||| |||||||    
T  23165405 atcacattgaatcatgtcattttctcaaaatattatc 23165441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 23930263 - 23930219
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| ||||||||||||||||||||||||| |||| |||||    
T  23930263 tgattacactgaattatgtcattttctcaaattactatccgtgtc 23930219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 28943429 - 28943473
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||||||| |||||||||||| |||||||||||||| ||||    
T  28943429 tgattacattgagttatgtcattttatcaaattattatcaatgtc 28943473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 31808522 - 31808562
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  31808522 tgtgattacattgacttgtgtcattttctcaaattattatc 31808562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 43250025 - 43249993
Alignment:
Q  260 attatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||| |||||    
T  43250025 attatgtcattttctcaaattattatccgtgtc 43249993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 11412783 - 11412827
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  11412783 tgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 40747793 - 40747832
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  40747793 acattgaattatgtcattttctcaaattattatccgtgtc 40747832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 3921711 - 3921674
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattat 285  Q
    |||| |||||||||||||||||||||||||||||||||    
T  3921711 tgattacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 11571624 - 11571591
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatc 286  Q
    ||||||||||||||||||||||||||||||||||    
T  11571624 acattgaattatgtcattttctcaaattattatc 11571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 42004973 - 42005010
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42004973 aattatgtcattttctcaaattattatccgtgtctgtg 42005010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 7988466 - 7988510
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||    
T  7988466 tgattacattgaattatgtcactttcttaaattattatcagtgtc 7988510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 30847735 - 30847779
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| |||||||||||||||||||| ||||||||||| |||||||    
T  30847735 tgattacattgaattatgtcattttttcaaattattagcagtgtc 30847779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 40181906 - 40181867
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  40181906 tgaattatgtgattttctcaaattattagcagtgtctgtg 40181867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 14332454 - 14332420
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaatt 280  Q
    |||||| ||||||||||||||||||||||||||||    
T  14332454 tgtgattacattgaattatgtcattttctcaaatt 14332420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 26462658 - 26462704
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| ||||| |||||| ||||||||| |||||||||||||||||    
T  26462658 tgtgattacattcaattatttcattttcttaaattattatcagtgtc 26462704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 42325595 - 42325561
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||||||||||||||||||||||||||| ||||    
T  42325595 tgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 31667471 - 31667426
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||| ||||| |||||||||||||||| ||||||||| ||||||    
T  31667471 tgtgattacatttaattatgtcattttctaaaattattaccagtgt 31667426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 43609831 - 43609872
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatca 287  Q
    |||||| ||||| |||||||| ||||||||||||||||||||    
T  43609831 tgtgattacattcaattatgttattttctcaaattattatca 43609872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 19637812 - 19637768
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||||||||| |||||||||||| ||||||||||| |||||    
T  19637812 tgattacattgaataatgtcattttcttaaattattatcggtgtc 19637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 29415783 - 29415751
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagt 289  Q
    |||||||||||||||||| ||||||||||||||    
T  29415783 tgaattatgtcattttcttaaattattatcagt 29415751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 7728 - 7693
Alignment:
Q  254 cattgaattatgtcattttctcaaattattatcagt 289  Q
    ||||||||||||||||||||||||||||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatcagt 7693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 34201066 - 34201105
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  34201066 acattgaattatgtcattttctcaaattattattagtgtc 34201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 3508096 - 3508056
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcag 288  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  3508096 tgattacattgaattatgttattttctcaaattattatcag 3508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 29198494 - 29198530
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattatta 284  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29198494 tgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 30068052 - 30068087
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||| |||||    
T  30068052 tgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 31236597 - 31236636
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  31236597 acattgaattatgtgattttctcaaattattagcagtgtc 31236636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 5307098 - 5307061
Alignment:
Q  254 cattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  5307098 cattgaattatgtcatttt-tcaaattattatcagtgtc 5307061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 12985436 - 12985390
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtctg 294  Q
    |||| |||||||||||||| ||||||||||||||||||  |||||||    
T  12985436 tgattacattgaattatgtgattttctcaaattattataggtgtctg 12985390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 31548306 - 31548352
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| |||||||||||||||||||| |||||| |||||| |||||    
T  31548306 tgtgattacattgaattatgtcattttatcaaataattatcggtgtc 31548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 10441242 - 10441213
Alignment:
Q  253 acattgaattatgtcattttctcaaattat 282  Q
    ||||||||||||||||||||||||||||||    
T  10441242 acattgaattatgtcattttctcaaattat 10441213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 14731745 - 14731708
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  14731745 aattatgtgattttctcaaattattagcagtgtctgtg 14731708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 31119134 - 31119101
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaa 278  Q
    ||||||| ||||||||||||||||||||||||||    
T  31119134 ttgtgattacattgaattatgtcattttctcaaa 31119101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 34739081 - 34739114
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||||||||||||||| |||||||||    
T  34739081 acattgaattatgtcattttctcatattattatc 34739114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 37225758 - 37225795
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattat 285  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  37225758 tgattacattgaattatgttattttctcaaattattat 37225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 40063995 - 40063958
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattat 285  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  40063995 tgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 42874569 - 42874536
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaa 278  Q
    ||||||| ||||||||||||||||||||||||||    
T  42874569 ttgtgattacattgaattatgtcattttctcaaa 42874536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 1639529 - 1639497
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||||||||||||||| ||||||    
T  1639529 acattgaattatgtcattttctcaaaatattat 1639497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 3520105 - 3520133
Alignment:
Q  253 acattgaattatgtcattttctcaaatta 281  Q
    |||||||||||||||||||||||||||||    
T  3520105 acattgaattatgtcattttctcaaatta 3520133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 7616864 - 7616904
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcag 288  Q
    |||| |||||||||| ||||||||||||||||||| |||||    
T  7616864 tgattacattgaattgtgtcattttctcaaattatcatcag 7616904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 8798853 - 8798889
Alignment:
Q  255 attgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  8798853 attgaattatgttattttctcaaattattaacagtgt 8798889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 14227261 - 14227229
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||| ||||||||||||||||||    
T  14227261 acattgaattatgttattttctcaaattattat 14227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 14740769 - 14740737
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||||||||||||| ||||||||    
T  14740769 acattgaattatgtcattttctcacattattat 14740737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 26915243 - 26915299
Alignment:
Q  236 acacgacttttgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||  ||||||| ||||| |||||||||||||||||||| | ||||| |||||    
T  26915243 acacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 28883902 - 28883930
Alignment:
Q  257 tgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||||||||||||||||||    
T  28883902 tgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 44067548 - 44067516
Alignment:
Q  260 attatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||| |||||    
T  44067548 attatgtcattttctcaaattattatccgtgtc 44067516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 2140501 - 2140540
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  2140501 acattgaattatgtcattttctcaaattattatcaatgtc 2140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 33135291 - 33135249
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcag 288  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  33135291 tgtgatcacattgaattatgttattttcacaaattattatcag 33135249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 34446609 - 34446565
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| |||||||||||||||||||||||||||||| |||||    
T  34446609 tgattacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 4859126 - 4859165
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattat 285  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  4859126 tgtgattacattggattatgtcattttctcaaattattat 4859165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 10031617 - 10031570
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||| |||||||||||||||||||||||||| | ||||| |||||    
T  10031617 ttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 10031570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 10158030 - 10157995
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaatta 281  Q
    |||||| |||||||||||||||||||||||||||||    
T  10158030 tgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 17168933 - 17168894
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  17168933 acattgaattatgtcattttttcaaattattatcaatgtc 17168894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 19369864 - 19369817
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||| |||||||||||||||||||||||||| | ||||| |||||    
T  19369864 ttgtgattacattgaattatgtcattttctcaaaattttatccgtgtc 19369817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 19602196 - 19602239
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||    
T  19602196 tgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 32299314 - 32299279
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcag 288  Q
    |||||||||||||| |||||||||||||||||||||    
T  32299314 acattgaattatgtgattttctcaaattattatcag 32299279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 9024191 - 9024225
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattat 282  Q
    |||| ||||||||||||||||||||||||||||||    
T  9024191 tgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 10760870 - 10760900
Alignment:
Q  262 tatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||||    
T  10760870 tatgtcattttctcaaattattatcagtgtc 10760900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 33135870 - 33135832
Alignment:
Q  254 cattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  33135870 cattgaattatatcattttctcaaattattattagtgtc 33135832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 6299551 - 6299518
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||| |||||||||||||||||||||    
T  6299551 acattgaattatatcattttctcaaattattatc 6299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 6306361 - 6306328
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||| |||||||||||||||||||||    
T  6306361 acattgaattatatcattttctcaaattattatc 6306328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 6751894 - 6751927
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaa 278  Q
    ||||||| ||||||||||||||||||||||||||    
T  6751894 ttgtgattacattgaattatgtcattttctcaaa 6751927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 13211307 - 13211340
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||||| ||||    
T  13211307 aattatgtcattttctcaaattattatcaatgtc 13211340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 29049929 - 29049892
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattat 285  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  29049929 tgattacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 29711297 - 29711268
Alignment:
Q  257 tgaattatgtcattttctcaaattattatc 286  Q
    ||||||||||||||||||||||||||||||    
T  29711297 tgaattatgtcattttctcaaattattatc 29711268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 12235534 - 12235578
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| ||||||||||||||||||| |||||||||| |||||    
T  12235534 tgattacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 17168489 - 17168521
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgt 291  Q
    |||||| ||||||||||||||||||||||||||    
T  17168489 aattatatcattttctcaaattattatcagtgt 17168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 33076447 - 33076415
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    ||||| |||||||||||||||||||||||||||    
T  33076447 acattcaattatgtcattttctcaaattattat 33076415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 33135221 - 33135178
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||    
T  33135221 tgatcacattgaattatgtta-tttctcaaatcattatcagtgtc 33135178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 28296367 - 28296328
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28296367 acattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 30080513 - 30080560
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||| |||||||||||||||||||||||||| | |||||||||||    
T  30080513 ttgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 30080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 32428946 - 32428985
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  32428946 acattgaattatgtcactttctcaaattattatcagtgtc 32428985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 11596470 - 11596508
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  11596470 tgattacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 38749583 - 38749622
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  38749583 acattgaattatgtcattttttcaaattattatcggtgtc 38749622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 43208289 - 43208332
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||    
T  43208289 tgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 18607112 - 18607150
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  18607112 tgattacattgaattatgttattttctcaaattattatc 18607150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 37472622 - 37472656
Alignment:
Q  258 gaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||| ||||||||||||||||    
T  37472622 gaattatgtcattttctcgaattattatcagtgtc 37472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 2577206 - 2577239
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||| |||||    
T  2577206 aattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 18162090 - 18162053
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgtctg 294  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  18162090 tgaattatgtcattttcttaaattattatccgtgtctg 18162053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Original strand, 41558706 - 41558735
Alignment:
Q  256 ttgaattatgtcattttctcaaattattat 285  Q
    ||||||||||||||||||||||||||||||    
T  41558706 ttgaattatgtcattttctcaaattattat 41558735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 2039864 - 2039900
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattatta 284  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  2039864 tgattacattgaatcatgtcattttctcaaattatta 2039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 2419901 - 2419857
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| |||||| ||| |||||||||||||||||||||||||    
T  2419901 tgattacactgaattgtgtaattttctcaaattattatcagtgtc 2419857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 4344786 - 4344742
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||| |||||||||||||||| ||||||||||||| |||||    
T  4344786 tgattacactgaattatgtcattttttcaaattattatcggtgtc 4344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 9449508 - 9449476
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||| ||||||||||||||||||    
T  9449508 acattgaattatgtgattttctcaaattattat 9449476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 18919048 - 18919080
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgt 291  Q
    |||||||||||||||||||||||||||| ||||    
T  18919048 aattatgtcattttctcaaattattatcggtgt 18919080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 19737503 - 19737535
Alignment:
Q  254 cattgaattatgtcattttctcaaattattatc 286  Q
    ||||||||||||| |||||||||||||||||||    
T  19737503 cattgaattatgtaattttctcaaattattatc 19737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 31264482 - 31264446
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattatta 284  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  31264482 tgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 39424680 - 39424648
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    ||||||||| |||||||||||||||||||||||    
T  39424680 acattgaatcatgtcattttctcaaattattat 39424648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 10535759 - 10535818
Alignment:
Q  233 ccaacacgacttttgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||  || |||| ||| |||||||||||||||||||||||||||||| |||||    
T  10535759 ccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 18571016 - 18570973
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||| |||||||||||||||||||||||||||||||||| ||||    
T  18571016 tgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 30563448 - 30563409
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30563448 acattgaattatgtcattttctcaaattattatccgtgtc 30563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 40682021 - 40681982
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  40682021 acattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 12933756 - 12933797
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtctg 294  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  12933756 acattgaattatgtcattttcttaaattattatgagtgtctg 12933797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 4332965 - 4332926
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  4332965 acattgaattatgtgattttcccaaattattatcagtgtc 4332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 19613633 - 19613672
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  19613633 acattgaattatgttattttctcaaattattatgagtgtc 19613672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 37497159 - 37497120
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  37497159 acattgaattgtggcattttctcaaattattatcagtgtc 37497120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 10250772 - 10250726
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| |||||||||| ||| |||||||||||||||||||| ||||    
T  10250772 tgtgattacattgaattgtgttattttctcaaattattatcaatgtc 10250726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 22131267 - 22131313
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| ||||||||  ||||||||||||||||||| ||||||||||    
T  22131267 tgtgattacattgaacaatgtcattttctcaaattactatcagtgtc 22131313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 31026739 - 31026701
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  31026739 tgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 43586017 - 43586063
Alignment:
Q  245 ttgtgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    ||||||| |||||||||||||||||||||||||| | ||||| ||||    
T  43586017 ttgtgattacattgaattatgtcattttctcaaaattttatctgtgt 43586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 16630841 - 16630796
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||| | |||||||||||||||||||| ||||||||||| ||||    
T  16630841 tgtgattaaattgaattatgtcattttcttaaattattatcggtgt 16630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 18420455 - 18420492
Alignment:
Q  254 cattgaattatgtcattttctcaaattattatcagtgt 291  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  18420455 cattgaattatgtgattttctcaaattattagcagtgt 18420492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 24011069 - 24011036
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||||| ||||    
T  24011069 aattatgtcattttctcaaattattatcaatgtc 24011036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 2073984 - 2073948
Alignment:
Q  250 atcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| |||||||||||| |||||||||||||||||||    
T  2073984 atcaaattgaattatgttattttctcaaattattatc 2073948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 2846924 - 2846968
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| |||||||||||||||||| |||| |||||||||| |||||    
T  2846924 tgattacattgaattatgtcattgtctccaattattatctgtgtc 2846968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 4690323 - 4690291
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgt 291  Q
    |||||||| ||||||||||||||||||||||||    
T  4690323 aattatgttattttctcaaattattatcagtgt 4690291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 16301174 - 16301214
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||||| ||||||| ||||||||||||||| ||||||||||    
T  16301174 tgtgattacattgagttatgtcattttctctaattattatc 16301214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 25317173 - 25317137
Alignment:
Q  256 ttgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  25317173 ttgaattatgtcattttttcaaattattatcggtgtc 25317137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 44605159 - 44605191
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||| ||||||||||||||||||    
T  44605159 acattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 19730222 - 19730260
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattatta 284  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  19730222 tgtgatcacattcaattatgtcattttctcaaattatta 19730260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 19750812 - 19750850
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattatta 284  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  19750812 tgtgatcacattcaattatgtcattttctcaaattatta 19750850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 20691363 - 20691322
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagt 289  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  20691363 tgattacactgaattatgtcattttctcaaattattatcagt 20691322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 9210846 - 9210878
Alignment:
Q  254 cattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||||||||||||||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatc 9210878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 44427887 - 44427835
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaa-ttattatcagtgtctgtgc 297  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||| |||||    
T  44427887 tgtgattacattggattatgtcattttctcaaacttattatcagtgtatgtgc 44427835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 9624680 - 9624641
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  9624680 acattgaattatgtgattttctcaaattattagcagtgtc 9624641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 11093606 - 11093571
Alignment:
Q  256 ttgaattatgtcattttctcaaattattatcagtgt 291  Q
    ||||||||||||||||| ||||||||||||||||||    
T  11093606 ttgaattatgtcattttttcaaattattatcagtgt 11093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 12704672 - 12704715
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||    
T  12704672 tgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 16789674 - 16789709
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||||| |||||    
T  16789674 tgaattatgtcattttctcaaattattatctgtgtc 16789709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 32166203 - 32166242
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  32166203 acattcaattatgtcattttctcaaattattaccagtgtc 32166242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 33548877 - 33548838
Alignment:
Q  257 tgaattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  33548877 tgaattaagtcattttctcaaattattatcggtgtctgtg 33548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 19323461 - 19323507
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||||||    
T  19323461 tgtgattaaattcaattatgtcattttctcaaattactatcagtgtc 19323507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 21149111 - 21149073
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  21149111 tgattacactgaattatgtcattttctcaaattattatc 21149073  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 27858386 - 27858344
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcag 288  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||    
T  27858386 tgtgattacattcaattaggtcattttctcaaattattatcag 27858344  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 40150586 - 40150624
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  40150586 tgattacattgaattatatcattttctcaaattattatc 40150624  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 52369819 - 52369781
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  52369819 tgattacattgaattatgtaattttctcaaattattatc 52369781  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 14338489 - 14338545
Alignment:
Q  239 cgacttttgtgatcacattgaattatgtcattttctcaaattattatcagtgtctgtg 296  Q
    |||| |||||||| |||||||||||||||||||| ||||| | ||||| |||||||||    
T  14338489 cgacatttgtgattacattgaattatgtcattttttcaaaattttatc-gtgtctgtg 14338545  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 25074822 - 25074789
Alignment:
Q  259 aattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||||||||||||||||||||||||| |||||    
T  25074822 aattatgtcattttctcaaattattatcggtgtc 25074789  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 34409355 - 34409400
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  34409355 tgtgattacattgaattatgtcattttctcgaagtattatcggtgt 34409400  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 8039250 - 8039206
Alignment:
Q  248 tgatcacattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||| ||||||||| ||| |||||||||||||||| |||||||||    
T  8039250 tgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 13807206 - 13807170
Alignment:
Q  255 attgaattatgtcattttctcaaattattatcagtgt 291  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagtgt 13807170  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 24205068 - 24205100
Alignment:
Q  260 attatgtcattttctcaaattattatcagtgtc 292  Q
    ||||||||||||||||||||||||||| |||||    
T  24205068 attatgtcattttctcaaattattatccgtgtc 24205100  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 34909914 - 34909874
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||||| || |||||||||||||| ||||||||||||||||    
T  34909914 tgtgattactttgaattatgtcatattctcaaattattatc 34909874  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 40017389 - 40017421
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||||||||||||||||| ||||    
T  40017389 acattgaattatgtcattttctcaaattgttat 40017421  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 41319330 - 41319362
Alignment:
Q  253 acattgaattatgtcattttctcaaattattat 285  Q
    |||||||||||||||||||| ||||||||||||    
T  41319330 acattgaattatgtcattttttcaaattattat 41319362  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 52558141 - 52558181
Alignment:
Q  246 tgtgatcacattgaattatgtcattttctcaaattattatc 286  Q
    |||||| ||||||||||||||| |||||||||||| |||||    
T  52558141 tgtgattacattgaattatgtccttttctcaaatttttatc 52558181  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 225288 - 225327
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatcagtgtc 292  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  225288 acattgtattatgtcattttctcaaattattatctgtgtc 225327  T

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Target: scaffold0598 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 8077 - 8106
Alignment:
Q  257 tgaattatgtcattttctcaaattattatc 286  Q
    ||||||||||||||||||||||||||||||    
T  8077 tgaattatgtcattttctcaaattattatc 8106  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 102944 - 102911
Alignment:
Q  253 acattgaattatgtcattttctcaaattattatc 286  Q
    |||||||||||| |||||||||||||||||||||    
T  102944 acattgaattatatcattttctcaaattattatc 102911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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