View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2230_high_12 (Length: 238)
Name: NF2230_high_12
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_high_12 |
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| [»] chr8 (5 HSPs) |
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| [»] chr3 (12 HSPs) |
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| [»] chr1 (9 HSPs) |
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| [»] chr2 (9 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0214 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 23132932 - 23132714
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23132932 |
tattggtccctatcaaagcagctttctgcttggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
23132833 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23132832 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
23132733 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
23132732 |
acatcaccatcaagttcat |
23132714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 14759722 - 14759889
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||||| | || |||| | |
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|
| T |
14759722 |
tattggcccctaccaaagcagttttctgcctgggaggggcacttctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag |
14759821 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct |
187 |
Q |
| |
|
|||||||| | ||||||| ||| ||||| |||| |||||||| ||||| || |||||||| ||||| |
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|
| T |
14759822 |
aagaaggggtttgtagctttcaaaattgacctggaaaaagcttttgacaaagtaaactgggaattcct |
14759889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 26973253 - 26973420
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| |||||||| | |||||||| ||||||||||||||||| ||||||||||||| | || |||| | |
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|
| T |
26973253 |
tattggcccctaccaaagcagttttctgcctgggaggggcacctctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaag |
26973352 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct |
187 |
Q |
| |
|
|||||||| | ||||||| ||| |||||| |||| |||||||| ||||| || |||||||| ||||| |
|
|
| T |
26973353 |
aagaaggggtttgtagctttcaaacttgacctggaaaaagcttttgacaaagtaaactgggaattcct |
26973420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 26587024 - 26587185
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| |||||||||||| || |||||| ||||||||||||||||| ||| || |||| | | ||||| ||| |
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|
| T |
26587024 |
tattggtccctaccaaatcagttttctgccaggtaggggcacttatgacaactcttttgttttgcaggaaattgctcactttatgaggaaatctaagagg |
26587123 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactggga |
181 |
Q |
| |
|
||||| || || || |||| ||||||||| | |||||||| || ||||| || |||||||| |
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|
| T |
26587124 |
aagaaaggctatgttgctttcaagcttgatcttgagaaagcatttgacaatgttaactggga |
26587185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 38348267 - 38348339
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaatt |
92 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||| | ||||| |||||| |||||||||||||| |
|
|
| T |
38348267 |
tattggcccctatcaaagcagcttcctgcctggtaggggaacttctgataattctattattttgcaggaaatt |
38348339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 11896948 - 11897166
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11896948 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
11897047 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897048 |
aagaagggttacgtagcttacaagcttgacttggagaaagcttttgacaacgtcaactaggatttcctaagcaactgcctccatgattttggatttccga |
11897147 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11897148 |
acatcaccatcaagctcat |
11897166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 26433045 - 26432827
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| || || ||| |
|
|
| T |
26433045 |
tattggcccctatcaaagcagtttcctgcctggtaggggtaccgcagataactctattgttttgcaggaaatttttcatttcatgaagagatcgaagagg |
26432946 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|| ||||||| |||||||| ||||||||| | ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
26432945 |
aaaaagggtttcgtagctttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattttgggtttccag |
26432846 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
26432845 |
acatcaccatcaaactcat |
26432827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 23424311 - 23424516
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg |
132 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| | |
|
|
| T |
23424311 |
caaagcagatttctgcctagtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg |
23424410 |
T |
|
| Q |
133 |
tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa |
232 |
Q |
| |
|
| |||| |||||| |||||||||||||| ||||| || |||| ||||||||||| | ||||| || || ||||| ||||| ||||||||||||| |
|
|
| T |
23424411 |
ttgctttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa |
23424510 |
T |
|
| Q |
233 |
gctcat |
238 |
Q |
| |
|
|||||| |
|
|
| T |
23424511 |
gctcat |
23424516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 11890085 - 11889898
Alignment:
| Q |
24 |
ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga |
123 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||| || || ||| |||||||||||||||||||| | || || ||| || ||||| | ||||| |
|
|
| T |
11890085 |
ggtccctaccaaagcagcttcctgccaggtaggggcacggctgacaacactattgttttgcaggaaattgtacactttatgtagagatctaagaagaaga |
11889986 |
T |
|
| Q |
124 |
agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttgg |
211 |
Q |
| |
|
| || || ||||||| ||| |||||| | ||||||||||| || || ||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
11889985 |
aaggctatgtagctttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttgg |
11889898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 17718708 - 17718490
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| ||||| ||||| | | |
|
|
| T |
17718708 |
tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag |
17718609 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|| || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | | || || || |||||||| || ||| |
|
|
| T |
17718608 |
aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg |
17718509 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
17718508 |
acgtcaccatcaagctcat |
17718490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 19019937 - 19019719
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||||| ||||| ||||| | | |
|
|
| T |
19019937 |
tattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatctaagaag |
19019838 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|| || ||||| || |||| |||||| ||| | |||||||| || || || ||||| |||||||| || | | || || || |||||||| || ||| |
|
|
| T |
19019837 |
aaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccgg |
19019738 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
19019737 |
acgtcaccatcaagctcat |
19019719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 38647532 - 38647314
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| || || | ||||| || |||||||||||||||||| | |||||||||| | || |||| |
|
|
| T |
38647532 |
tattggcctctatcaaagcatttttctgcctggtagaggaacatctgataattcaattgttttgcaggaaattgtacatttcatgagaaaatccaaaaat |
38647433 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|| |||||||| ||| | | ||| |||||| |||| |||||||| || || ||||||||||| ||||| | ||||| ||||||||||| ||||| |
|
|
| T |
38647432 |
aaaaagggttatgtaacattcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccag |
38647333 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38647332 |
acatcaccatcaagctcat |
38647314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 53608637 - 53608571
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatt |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
53608637 |
caaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaattattcatt |
53608571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 49150116 - 49150035
Alignment:
| Q |
24 |
ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga |
105 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
49150116 |
ggtccctattagagcagttttctgcctggtaggggcactaatgacaactcaattgttttgcaggaaattgttcatttcatga |
49150035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 15473795 - 15473656
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||| ||| ||| | |||||||| |||||||||||||||||| | ||||| ||||| || |||||| |
|
|
| T |
15473795 |
tattggcccctatcaaagtagttttctgcctggta-gggtacttctgataactcaattgttttgcaggaaattgtacattttatgaaaagatccaaaagg |
15473697 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagc |
160 |
Q |
| |
|
|| |||||||| || |||| || ||||||| |||| ||||| |
|
|
| T |
15473696 |
aaaaagggttatgtggctttcaggcttgacctggaaaaagc |
15473656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 3659964 - 3659894
Alignment:
| Q |
21 |
attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat |
91 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||||||||||| | || || || ||||||||||||||||| |
|
|
| T |
3659964 |
attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat |
3659894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 55025149 - 55025080
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaa |
89 |
Q |
| |
|
|||||| ||||||||||| || ||||| |||||||||||||| | || || || ||||||||||||||| |
|
|
| T |
55025149 |
tattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcaattgttttgcaggaa |
55025080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 20284649 - 20284867
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20284649 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaaacactctaaaagg |
20284748 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20284749 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggattttctaagcaactgcctccatgattttggatttccga |
20284848 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
20284849 |
acatcaccatcaagctcat |
20284867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 31325302 - 31325084
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||| | |||||| ||||||||||||||||| ||| | |||||||| |||||||||||||||||| | || ||||||| || || | | |
|
|
| T |
31325302 |
tattggcccctaccgaagcagttttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattgtccacttcatgagaagatccaagaag |
31325203 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||||||||||| || || ||||| ||||||||||| | |||||||||||||| || ||||| |
|
|
| T |
31325202 |
aagaagggttacgtagctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttccag |
31325103 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
31325102 |
acatcacaatcaagctcat |
31325084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 50451695 - 50451907
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||| |||| | | ||||| | | |
|
|
| T |
50451695 |
tattggcccttaccaaagcagctttctgcctagtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaggaagtctaagaag |
50451794 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|| || ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| || | ||||| ||||| ||||| |||||| |
|
|
| T |
50451795 |
aaaaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttggttttccgg |
50451894 |
T |
|
| Q |
220 |
acatcaccatcaa |
232 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50451895 |
acatcaccatcaa |
50451907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 50236915 - 50236697
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga-agcactctaaaag |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || | |||||||| |||||||||||||||||| |||||||||||| | | || ||||| |
|
|
| T |
50236915 |
tattggtccctatcaaagcatttttctgcctggtaggggtacatctgataactcgattgttttgcaggaaattgttcatttcatgagaagattc-aaaag |
50236817 |
T |
|
| Q |
119 |
gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg |
218 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||| || ||||| || || || || | ||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
50236816 |
aaagaagggctatgtagcttttaagcttgatttggaaaaggcttttgataatgttaattaggacttcctcaattcttgtctccatgattttggatttccg |
50236717 |
T |
|
| Q |
219 |
aacatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||| ||| ||||| |
|
|
| T |
50236716 |
gacatcaccaccaaactcat |
50236697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 10104022 - 10103863
Alignment:
| Q |
28 |
cctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaaggg |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||||||| ||||||| | | | ||||| | ||||||||| |
|
|
| T |
10104022 |
cctatcaaagtagctttctgcctggtaggggaacggctgataactcaattgttttgcaggaaattatttatttcataaggaaatctaagaagaagaaggg |
10103923 |
T |
|
| Q |
128 |
ttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct |
187 |
Q |
| |
|
|| || |||| |||||| || || |||||| || | ||||| |||| ||||| ||||| |
|
|
| T |
10103922 |
ctatgttgctttcaagctcgatttagagaaaactattgacaatgtcagatgggacttcct |
10103863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 43298158 - 43298373
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||| ||||||||| ||||||| ||| | |||||||| ||||||||||||||||| ||||||| |||| ||||||| | |
|
|
| T |
43298158 |
tattggcccttaccaaagcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcattttatgagaagatctaaaaag |
43298257 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||| || ||||| | ||| |||||| || |||||||||| | || ||||| |||||||| |||| |||||| |||||||||||| ||| |
|
|
| T |
43298258 |
aagaagggatatgtagccttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttgcctcattgattttggattctcga |
43298357 |
T |
|
| Q |
220 |
acatcaccatcaagct |
235 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
43298358 |
acatcaccatgaagct |
43298373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 1524767 - 1524852
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga |
105 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||||||||||||| | || ||||||| |
|
|
| T |
1524767 |
tattggcccctatcaaagtagttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgtccacttcatga |
1524852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 23465137 - 23465224
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactc-tattgttttgcaggaaattattcatttcatgaa |
106 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| | || ||||| | || ||||| |||||||| ||||||||||||| |
|
|
| T |
23465137 |
tattggtccctatcagagcagttttctgcctggtaggggcactactgacaactcatttttttttggaggaaattgttcatttcatgaa |
23465224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 5193271 - 5193231
Alignment:
| Q |
195 |
tgcctccatgattttggatttccgaacatcaccatcaagct |
235 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
5193271 |
tgcctccttgattttggatttacgaacatcaccatcaagct |
5193231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 14654027 - 14653809
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
14654027 |
tattggtccctatcaaagcagttttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcgatctaagagg |
14653928 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
14653927 |
aagaagggatacgtagctttcaagcttgatttggagaaagcattcgacaacgtcaactgggaattcctaaacaactgcctccatgattttggatttccta |
14653828 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14653827 |
acatcaccatcaagctcat |
14653809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 35135569 - 35135351
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||| ||||||| |||||||| ||| ||||||||||||| || |||| ||||| ||||||||||||||||| || || || ||||||| |||||||||| |
|
|
| T |
35135569 |
tattagtccctaccaaagcagttttttgcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg |
35135470 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||||| ||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||| ||| |||||||| ||||| || || || |
|
|
| T |
35135469 |
aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggacttccttcgcatttgcctccaggatttcggcttcccag |
35135370 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
35135369 |
acattaccatcaaactcat |
35135351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 40327975 - 40328193
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||||||||| ||||| || ||| | ||||||||||| || |||| ||||| ||||||||||||||||| || || || ||||||| |||||||||| |
|
|
| T |
40327975 |
tattggtccctaccaaagtagtttttttcctggtaggggtacctcagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg |
40328074 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||||| ||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||| ||| |||||||| ||||| || || || |
|
|
| T |
40328075 |
aagaagggttttgtagctttcaagcttgatttagagaaagcttttgacaacgtcaactgggaattccttcgcatttgcctccaggatttcggcttcccag |
40328174 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
40328175 |
acattaccatcaaactcat |
40328193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 19265213 - 19265431
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||| || ||| ||||| ||||||||||||||||| || || || ||||||| |||||||||| |
|
|
| T |
19265213 |
tattggtccctaccaaagcaattttttgcctggtaggggtacccaagacaactccattgttttgcaggaaataatccactttatgaagcgctctaaaagg |
19265312 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||||| || |||| ||||||||| || ||||||||||| ||||||||||||| ||| ||||| ||| |||||||| ||||| || || || | |
|
|
| T |
19265313 |
aagaagggttttgtggctttcaagcttgatttagagaaagcttttgacaacgtcaacttggacttccttcgcatttgcctccaggatttcggcttcccaa |
19265412 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
19265413 |
acattaccatcaaactcat |
19265431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 573002 - 573201
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg |
132 |
Q |
| |
|
|||||||| ||||||| |||||||| ||| | |||||||| |||||||||||||||||| |||||||||||| | || |||| ||||||||| || | |
|
|
| T |
573002 |
caaagcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaattgttcatttcatgagaaaatcaaaaaagaagaaggggtatg |
573101 |
T |
|
| Q |
133 |
tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa |
232 |
Q |
| |
|
| |||| |||||| |||||||| |||||||| | || |||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
573102 |
ttgctttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttccagacatcaccatcaa |
573201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 16322246 - 16322413
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||| ||| |||||||||||||| | ||||| ||||| | || |||||| |
|
|
| T |
16322246 |
tattggcccctatcaaagtagctttctacctggtaggggtactgctgacaactcaattattttgcaggaaattttacattttatgaaacgatccaaaagg |
16322345 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct |
187 |
Q |
| |
|
|| ||||| ||||| |||| |||||||||| |||| ||||| || || || || || ||||||||||| |
|
|
| T |
16322346 |
aaaaagggctacgtggctttcaagcttgacctggaaaaagcgtttgataatgttaattgggatttcct |
16322413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 177296 - 177445
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||||||||| |||||||| || |||| |||||||||||| | || |||||||||||||||||||||||| ||||||| ||| | || |||||| |
|
|
| T |
177296 |
tattggtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaaagg |
177395 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaa |
169 |
Q |
| |
|
|| || |||||||| |||| ||| ||||| | ||||||||||| ||||| |
|
|
| T |
177396 |
aaaaaaggttacgttgctttcaaacttgatcttgagaaagcttttgacaa |
177445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 42403567 - 42403400
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| |||| ||||| || ||||| ||||||||||| ||| | ||||| || |||||||||||||||||||| ||||| ||||| || |||||| |
|
|
| T |
42403567 |
tattggcccctgccaaagtagttttctacctggtaggggtacttctgataattcaattgttttgcaggaaattatacattttatgaaaagatccaaaagg |
42403468 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct |
187 |
Q |
| |
|
|| |||||||| || || | |||||||||| |||| ||||| || || || ||||||||||| ||||| |
|
|
| T |
42403467 |
aaaaagggttatgtggccttcaagcttgacctggaaaaagcgtttgataatgtcaactgggaattcct |
42403400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 39012328 - 39012398
Alignment:
| Q |
21 |
attggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaat |
91 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||||||||||| | || || || ||||||||||||||||| |
|
|
| T |
39012328 |
attggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaat |
39012398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 7816932 - 7817150
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
7816932 |
tattggcccttaccaaagcagttttctgcctggtaggggtacttcagataactctattgttttgcaggaaattttgcatttcatgaagcggtctaaaagg |
7817031 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||| | ||||| | ||| |||||| |||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||| || || |
|
|
| T |
7817032 |
aagaaggggtttgtagcattcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttccttagttcgtgcctccatgattttggtttccctg |
7817131 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
7817132 |
acatcacaatcaagctcat |
7817150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 23944828 - 23944900
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
23944828 |
caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga |
23944900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 6641366 - 6641223
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||||||||| || ||||| ||| ||||||||||| |||||||| ||| |||||||||||||| | ||||| ||||| || ||||| |
|
|
| T |
6641366 |
tattggcccctatcaaagtagttttctacctcgtaggggcacttatgataactcaattattttgcaggaaattgtccattttatgaaaagatccaaaaga |
6641267 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagcttt |
163 |
Q |
| |
|
|| ||||| || ||||||| |||||||||| |||| |||||||| |
|
|
| T |
6641266 |
aaaaagggctatgtagctttcaagcttgacctggaaaaagcttt |
6641223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 23620971 - 23620887
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
104 |
Q |
| |
|
|||||||||||| |||||| | ||||||| ||||| |||||| || |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
23620971 |
tattggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaattgtccatttcatg |
23620887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 54477758 - 54477539
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgtttt-gcaggaaattattcatttcatgaagcactctaaaag |
118 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| | | || ||||| |
|
|
| T |
54477758 |
tattggcccctgccaaagcagttttctgcctggaaggggcacttcagataactctattgtttttgcaggaaataattcatttcataaggagatccaaaag |
54477659 |
T |
|
| Q |
119 |
gaagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccg |
218 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||| | |||||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| | || || |
|
|
| T |
54477658 |
taagaagggttatgtagcttttaagcttgatttgaaaaaagcttttgacaatgtcaattgggaattccttagcaactgccttcatgatttcgagttccct |
54477559 |
T |
|
| Q |
219 |
aacatcaccatcaagctcat |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
54477558 |
gacatcaccatcaagctcat |
54477539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 3881512 - 3881679
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||| | ||||| | | |
|
|
| T |
3881512 |
tattggcccttaccaaagcagttttctgcctggtaggggaacttctgataactctattgttttgcaggaaattattcattttatgaagaagtctaagaag |
3881611 |
T |
|
| Q |
120 |
aagaag---ggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggattt |
184 |
Q |
| |
|
|||||| ||||| || |||| |||||| || ||||| ||||| || || || ||||| |||||||| |
|
|
| T |
3881612 |
aagaagaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattt |
3881679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 33803788 - 33803860
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatga |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
33803788 |
caaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatga |
33803860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 48847971 - 48848055
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
104 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||||||||| | || ||| | ||||||||||||||||| | ||| |||||| |
|
|
| T |
48847971 |
tattggtctctatcaaagcagttttctgtctggtaggggcactactgacaacacaattgttttgcaggaaatcactcacttcatg |
48848055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 46784826 - 46784742
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
104 |
Q |
| |
|
|||||||||||| ||||| || ||||| || |||| |||||| | || |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
46784826 |
tattggtccctaccaaagtagttttctaccaggtaagggcacctctgacaactctattgttttgcaggaaattgttcacttcatg |
46784742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 11297152 - 11296934
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| || ||| | |||||||| ||||||||||| ||||| || || ||||||| ||||||||| |
|
|
| T |
11297152 |
tattggttcctatcaaagcagttttctgcctggtagtggtacttctgataactcaattgttttgcacgaaatcatccacttcatgataagatctaaaagg |
11297053 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |||||||| || || | ||||||||||||||| || || |
|
|
| T |
11297052 |
aagaagggttatgtcgctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccg |
11296953 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
|||||||||| | |||||| |
|
|
| T |
11296952 |
acatcaccattatgctcat |
11296934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 24894176 - 24893971
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg |
132 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||| | | || || |||||||| ||||| | |
|
|
| T |
24894176 |
caaagcagctttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaagaggaagaaaggttatg |
24894077 |
T |
|
| Q |
133 |
tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaa |
232 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||| || |||| ||||||||||| | ||||| || || ||||| ||||| ||||||||||||| |
|
|
| T |
24894076 |
ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaa |
24893977 |
T |
|
| Q |
233 |
gctcat |
238 |
Q |
| |
|
|||||| |
|
|
| T |
24893976 |
gctcat |
24893971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 35233286 - 35233499
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||||||||||| | || ||||| ||||||||| |||||||| |||| ||||||| | || |||| | |
|
|
| T |
35233286 |
tattggcccctatcaaagcagttttctgtctggtaggggcacctctgacaactcaattgttttgaaggaaattgttcacttcatgagaaaatccaaaaag |
35233385 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
||||| || || ||||||| ||| ||||| | ||||||||||| ||||| ||||||||||| || || || || ||||| ||||| || || || || | |
|
|
| T |
35233386 |
aagaaagggtatgtagctttcaaacttgatctagagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggtttcccta |
35233485 |
T |
|
| Q |
220 |
acatcaccatcaag |
233 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35233486 |
acatcaccatcaag |
35233499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 32725814 - 32725599
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| || || |||||||| ||||||||| |||||| ||| || ||||| ||||||||| ||||||| |||| || |||| ||||||| | |
|
|
| T |
32725814 |
tattggcccttaccaaagcagttttctgcctaataggggaacttatgacaactcaattgttttgtaggaaatagttcactttatgagaagatctaaaaag |
32725715 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
|||||||| || ||||||| ||| |||||| ||||||||||||| || || |||| |||||||| || | ||||||| ||| |||||||||||| |
|
|
| T |
32725714 |
aagaagggatatgtagctttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttgcctccttgagtttggatttccgg |
32725615 |
T |
|
| Q |
220 |
acatcaccatcaagct |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32725614 |
acatcaccatcaagct |
32725599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 75707 - 75923
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaagg |
119 |
Q |
| |
|
|||||| ||||||||||| || | | ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||| || |||||| |
|
|
| T |
75707 |
tattggcccctatcaaagtagttgtttgcctggtaggggcacttcagataactttattgttttgcaggaaataattcacttcatgaagcgttccaaaagg |
75806 |
T |
|
| Q |
120 |
aagaagggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccga |
219 |
Q |
| |
|
||||||| | ||||||| ||| ||||| || |||| |||| ||||||||||||| |||||| || |||| ||||||||||||||| || || | |
|
|
| T |
75807 |
aagaaggactttgtagctttcaaacttgatatg--gaaatcttttgacaacgtcaacttggattttcttagcatctgcctccatgatttcggcttcctag |
75904 |
T |
|
| Q |
220 |
acatcaccatcaagctcat |
238 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
75905 |
acatcactatcaagctcat |
75923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 23208206 - 23208052
Alignment:
| Q |
33 |
caaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaagaagggttacg |
132 |
Q |
| |
|
|||||||| |||||||| |||||||| ||| | || ||||| ||||||||||||||||||||||| || |||| | | || || |||||||| ||||| | |
|
|
| T |
23208206 |
caaagcagttttctgccaggtaggggaacttctgacaactcaattgttttgcaggaaattattcactttatgaggaagtcaaagaggaagaaaggttatg |
23208107 |
T |
|
| Q |
133 |
tagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcct |
187 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
23208106 |
ttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttcct |
23208052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 27781979 - 27781813
Alignment:
| Q |
24 |
ggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatgaagcactctaaaaggaaga |
123 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||| |||||||| | || || ||| | ||||| | ||||| |
|
|
| T |
27781979 |
ggtccctatcaaagcagcttcctgccaggtaggggcacggctgacaactctattgttttgtaggaaattgtacactttatgcggagatctaagaagaaga |
27781880 |
T |
|
| Q |
124 |
agggttacgtagcttacaagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaag |
190 |
Q |
| |
|
| |||| ||||||| ||| |||||| | ||||||||||| || || ||||| ||||||||| |||| |
|
|
| T |
27781879 |
aaggttgtgtagctttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaag |
27781813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 16770314 - 16770233
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttc |
101 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||| |||||||||||||||||| |||||||| |
|
|
| T |
16770314 |
tattggtccttatcagagcagttttctgcctggtaggggcactactgacaactcaattgttttgcaggaaatttttcatttc |
16770233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 1579512 - 1579428
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| || | || ||||| ||||||||| ||||||| | ||| |||||| |
|
|
| T |
1579512 |
tattggtccctatcaaagcagttttctgcctagtaggggcgctactgacaactcaattgttttgaaggaaataactcacttcatg |
1579428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 8764 - 8841
Alignment:
| Q |
20 |
tattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattca |
97 |
Q |
| |
|
||||||||| || |||||||| || ||||||||||||||||| | || || | ||||||||||||||||||||||| |
|
|
| T |
8764 |
tattggtccttaccaaagcagtttcctgcctggtaggggcaccactgacaatgccattgttttgcaggaaattattca |
8841 |
T |
|
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