View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2230_high_2 (Length: 615)

Name: NF2230_high_2
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2230_high_2
NF2230_high_2
[»] chr5 (21 HSPs)
chr5 (1-524)||(30432430-30432949)
chr5 (1-417)||(30680518-30680928)
chr5 (1-395)||(30056292-30056681)
chr5 (119-415)||(30746133-30746426)
chr5 (9-524)||(30479893-30480415)
chr5 (119-415)||(30716689-30716979)
chr5 (91-220)||(37345101-37345230)
chr5 (1-94)||(30716975-30717068)
chr5 (1-94)||(30746044-30746137)
chr5 (289-500)||(30203564-30203779)
chr5 (522-591)||(30480044-30480112)
chr5 (535-598)||(30716863-30716925)
chr5 (9-89)||(30340327-30340407)
chr5 (535-597)||(30056464-30056525)
chr5 (535-597)||(30680695-30680756)
chr5 (535-597)||(30746187-30746248)
chr5 (289-364)||(29611690-29611765)
chr5 (1-60)||(37345045-37345104)
chr5 (535-589)||(30432605-30432658)
chr5 (535-583)||(37345183-37345230)
chr5 (299-352)||(29582465-29582518)
[»] chr4 (2 HSPs)
chr4 (42-532)||(20302617-20303106)
chr4 (522-598)||(20302913-20302988)
[»] chr6 (1 HSPs)
chr6 (188-253)||(10264978-10265043)
[»] chr1 (1 HSPs)
chr1 (292-368)||(7095769-7095845)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 30432430 - 30432949
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30432430 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 30432529  T
Q  101 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattat---acatgaaagggctatttcataaa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||| ||||||||||||||    
T  30432530 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatgtattattatacatgaaacggctatttcataaa 30432629  T
Q  198 tgaaggaccatcacctgcatattttcatggatacatgtatttaaattgaaatcaaatcaagtaatatatgttaaaattaatactataggaat-gaagatc 296  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||     ||||| |||||||||||||||||||||||||| |||||||    
T  30432630 tgaaggaccatcacctgcatattttcatggatatatgtatttaaattgaaataaa-----gtaatgtatgttaaaattaatactataggaattgaagatc 30432724  T
Q  297 tataccatatcaataccagcattaacggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaaa 396  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||     ||||||| |||||| |||||    
T  30432725 tataccatatcaataccagcattaacgaaagtggagacgcgataacgataatatgaccaataaggttgacatctt-----gatttcg-ctcagataaaaa 30432818  T
Q  397 tcacaagtttcacataaataatttcaaagatgtcttcttcttcattccaataaacaaattttggaatgtgtgctatcttgtctcattcctctcctgttct 496  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||    
T  30432819 tcacaagtttcacataaatcaattcaaggatgtcttcttcttcattccaataaacaatttttggaatatgtggtatcttgtcacattcctctcctgttct 30432918  T
Q  497 cttcctacactc---taatttttggcaacca 524  Q
    || | |||||||   ||||||| ||||||||    
T  30432919 ctccttacactcctttaattttgggcaacca 30432949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 30680928 - 30680518
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30680928 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttcattcctaatatttcttaac 30680829  T
Q  101 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatga 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30680828 aacgtcgccaattccggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatga 30680729  T
Q  201 aggaccatcacctgcatattttcatggatacatgtatttaaattgaaatcaaatcaagtaatatatgttaaaattaatactataggaatgaagatctata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||    
T  30680728 aggaccatcacctgcatattttcatggatacatgtatttaaattgaaa-----tcaagtaatatatgttaaaattaatactataggaatgaagatctata 30680634  T
Q  301 ccatatcaataccagcattaacggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaaatcac 400  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||||||||||| |||| ||||||||    
T  30680633 ccatatcaataccagcatcaacggaagtggagatgcgataacgataatctgacccataaggttgacaattttaatcgatttcgtctgagac-aaaatcac 30680535  T
Q  401 aagtttcacataaataa 417  Q
    ||| ||||||| |||||    
T  30680534 aaggttcacatgaataa 30680518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 30056292 - 30056681
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 100  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30056292 actatgccttacccttgaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 30056391  T
Q  101 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30056392 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaattccgactctttcataaatatattatacatgaaagggctatttcataaatga 30056491  T
Q  201 aggaccatcacctgcatattttcatggatacatgtatttaaattgaaatcaaatcaagtaatatatgttaaaattaatactataggaatgaagatctata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30056492 aggaccatcacctgcatattttcatggatacatgtatttaaattg-----aaatcaagtaatatatgttaaaattaatactataggaatgaagatctata 30056586  T
Q  301 ccatatcaataccagcattaacggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaa 395  Q
    |||||||||||||||||| || ||||||||| | |||||||||||||||||||  || |||||||||  |||||||||||| |||||||||||||    
T  30056587 ccatatcaataccagcatcaatggaagtggaaacgcgataacgataatctgacgtataaggttgacaattttaatcgattttgtctcagacaaaa 30056681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 119 - 415
Target Start/End: Original strand, 30746133 - 30746426
Alignment:
Q  119 tattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30746133 tattggtgtttcccctgatcaaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 30746232  T
Q  219 ttttcatggatacatgtatttaaattgaaatcaaatcaagtaatatatgttaaaattaatactataggaatgaagatctataccatatcaataccagcat 318  Q
    |||||||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30746233 ttttcatggatacatgtatttaaattgaaatcaagt--aataatatatgttaaaattaatactataggaatgaagatctatgccatatcaataccagcat 30746330  T
Q  319 taacggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaaatcacaagtttcacataaat 415  Q
     ||||||||||||||||||||||| ||||||||||| || |||||||||  ||||||||||||||||| |||| ||||||||||| |||||||||||    
T  30746331 caacggaagtggagatgcgataacaataatctgacccataaggttgacaattttaatcgatttcgtctgagac-aaaatcacaaggttcacataaat 30746426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 524
Target Start/End: Original strand, 30479893 - 30480415
Alignment:
Q  9 ttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatat-tgcttaacaacgtcg 107  Q
    |||||| ||||  ||| |||||||| | | || ||||||||| ||||||||||||||||||||||||||| ||| |||||| || |||| ||||||||||    
T  30479893 ttacctggaaaccaacgataaccagtaaagagatatcagttaaaggaaattgaaatcttcagcagcaaacatcactcctaaaatatgctcaacaacgtcg 30479992  T
Q  108 ccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggacca 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||| | ||||||||| || ||||||||||||||||||| ||    
T  30479993 ccaattctggctattggtgtttcccctgatcgaacttgaaactccaact-ttccataaatatttcatacatgaagggactatttcataaatgaaggatca 30480091  T
Q  208 tcacctgcatattttcatggatacatgtatttaaattgaaatcaaatcaagtaatatat---gttaaa---attaatactataggaa-tgaagatctata 300  Q
    | ||||||||||||||||| | || || | ||||||||     ||||| |||| |||||   ||| ||    ||||||||||||||| ||||||||||||    
T  30480092 taacctgcatattttcatgaacacgtgaaattaaattg-----aaatctagtagtatatggagttgaacatcttaatactataggaattgaagatctata 30480186  T
Q  301 ccatatcaatac----cagcatta-acggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaa 395  Q
    ||||||||||||     || || | | ||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30480187 ccatatcaatactatgaaggatcataaggaagtggagacgccataacgataatctgacccattaggttgacatctttaattgatttcgtctcagacaaaa 30480286  T
Q  396 atcacaagtttcacataaataatttcaaagatgtcttcttcttcattccaataaacaaattttggaatgtgtgctatcttgtctcattcctctcctgttc 495  Q
    |||||||||||||||||||| | ||||||||||   |||||||||||||||||||||| ||||||||| |||| |||| |||| ||||||||||||| ||    
T  30480287 atcacaagtttcacataaatgaattcaaagatg---tcttcttcattccaataaacaatttttggaatatgtggtatcctgtcacattcctctcctgctc 30480383  T
Q  496 tcttcctacactc---taatttttggcaacca 524  Q
    ||| | |||||||   ||||||| ||||||||    
T  30480384 tctccttacactcctttaattttaggcaacca 30480415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 119 - 415
Target Start/End: Complemental strand, 30716979 - 30716689
Alignment:
Q  119 tattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30716979 tattggtgtttcccgtgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 30716880  T
Q  219 ttttcatggatacatgtatttaaattgaaatcaaatcaagtaatatatgttaaaattaatactataggaatgaagatctataccatatcaataccagcat 318  Q
    |||||||| ||||||| | | |||||||     |||| |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  30716879 ttttcatgaatacatgaaatcaaattga-----aatctagtagtatatgttaaaattaatactataggaatgaagatctatatcttatcaataccagcat 30716785  T
Q  319 taacggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaaatcacaagtttcacataaat 415  Q
     || ||||||||| | |||||||||||||||||||| || |||||||||  |||||||||||||||||||||| ||||||||||| |||||||||||    
T  30716784 caatggaagtggaaacgcgataacgataatctgacccataaggttgacaattttaatcgatttcgtctcagac-aaaatcacaaggttcacataaat 30716689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 37345101 - 37345230
Alignment:
Q  91 attgcttaacaacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatt 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  37345101 attgcttaacaacgtagccaattctggctattggtgtttcccctgatcgaacatgaaactctgactcttgcattaatatattatacatgaaagggctatt 37345200  T
Q  191 tcataaatgaaggaccatcacctgcatatt 220  Q
    ||||||||||||||||||||||||||||||    
T  37345201 tcataaatgaaggaccatcacctgcatatt 37345230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30717068 - 30716975
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattg 94  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30717068 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttcattcctaatattg 30716975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30746044 - 30746137
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattg 94  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  30746044 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgatatcttcagcagcaaacttcattcctaatattg 30746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 289 - 500
Target Start/End: Original strand, 30203564 - 30203779
Alignment:
Q  289 tgaagatctataccatatcaataccagcattaacggaagtggagatgcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctca 388  Q
    ||||||||||||||||||| || |||||||  | |  |||||||| |||| || |||||||||||  || |||||| |||  | ||||||||| ||| ||    
T  30203564 tgaagatctataccatatctattccagcatccatgagagtggagacgcgagaatgataatctgacgcataaggttggcataat-aatcgattttgtccca 30203662  T
Q  389 gacaaaaatcacaagtttcacataaat-aat----ttcaaagatgtcttcttcttcattccaataaacaaattttggaatgtgtgctatcttgtctcatt 483  Q
    | ||||||||| ||| ||||||||||| |||    || ||| |||| ||||||||||||||| ||||||||||||||||||| || ||||||||| ||||    
T  30203663 gtcaaaaatcataaggttcacataaatcaatgctcttaaaaaatgtattcttcttcattccagtaaacaaattttggaatgtctgttatcttgtcccatt 30203762  T
Q  484 cctctcctgttctcttc 500  Q
    |||||| ||||||||||    
T  30203763 cctctcttgttctcttc 30203779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 30480044 - 30480112
Alignment:
Q  522 ccatgaatatttcatacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatgaa 591  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
T  30480044 ccataaatatttcatacatgaa-gggactatttcataaatgaaggatcataacctgcatattttcatgaa 30480112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 535 - 598
Target Start/End: Complemental strand, 30716925 - 30716863
Alignment:
Q  535 atacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatgaatacatga 598  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  30716925 atacatgaaaggg-ctatttcataaatgaaggaccatcacctgcatattttcatgaatacatga 30716863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 30340407 - 30340327
Alignment:
Q  9 ttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaa 89  Q
    |||||| ||||  ||| |||||||||| | || ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  30340407 ttacctggaaaccaacgataaccagcaaagagatatcagttaaaggaaattgaaatcttcagcagcaaacttcactcctaa 30340327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 597
Target Start/End: Original strand, 30056464 - 30056525
Alignment:
Q  535 atacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatgaatacatg 597  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  30056464 atacatgaaaggg-ctatttcataaatgaaggaccatcacctgcatattttcatggatacatg 30056525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 597
Target Start/End: Complemental strand, 30680756 - 30680695
Alignment:
Q  535 atacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatgaatacatg 597  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  30680756 atacatgaaaggg-ctatttcataaatgaaggaccatcacctgcatattttcatggatacatg 30680695  T

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Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 597
Target Start/End: Original strand, 30746187 - 30746248
Alignment:
Q  535 atacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatgaatacatg 597  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  30746187 atacatgaaaggg-ctatttcataaatgaaggaccatcacctgcatattttcatggatacatg 30746248  T

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Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 29611765 - 29611690
Alignment:
Q  289 tgaagatctataccatatcaataccagcattaacggaagtggagatgcgataacgataatctgaccaattaggttg 364  Q
    ||||||||| |||||| ||||| ||||||||||  ||||||||||||| |||||||||||| |||| || ||||||    
T  29611765 tgaagatctgtaccatgtcaattccagcattaattgaagtggagatgcaataacgataatcggacccataaggttg 29611690  T

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Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37345045 - 37345104
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattg 60  Q
    |||||||||||||||||||||||||||||| |||| | | |||||||||| |||||||||    
T  37345045 actatgccttaccttgaaattaaccataacaagcaaagaactatcagttaaaggaaattg 37345104  T

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Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 589
Target Start/End: Original strand, 30432605 - 30432658
Alignment:
Q  535 atacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatg 589  Q
    |||||||||| || ||||||||||||||||| ||||| |||||||||||||||||    
T  30432605 atacatgaaacgg-ctatttcataaatgaaggaccatcacctgcatattttcatg 30432658  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 37345183 - 37345230
Alignment:
Q  535 atacatgaaagggactatttcataaatgaagcaccataacctgcatatt 583  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  37345183 atacatgaaaggg-ctatttcataaatgaaggaccatcacctgcatatt 37345230  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 29582465 - 29582518
Alignment:
Q  299 taccatatcaataccagcattaacggaagtggagatgcgataacgataatctga 352  Q
    |||||| || || |||||||||| ||||||||| |||| |||||||||||||||    
T  29582465 taccatgtcgattccagcattaatggaagtggaaatgcaataacgataatctga 29582518  T

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Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 42 - 532
Target Start/End: Complemental strand, 20303106 - 20302617
Alignment:
Q  42 tatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatat-tgcttaacaacgtcgccaattctggctattggtgtttcccctgatcga 140  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||| |||||| || |||||||||||||||||||||||||||||||||    
T  20303106 tatcagttaaaggaaattgaaatcttcagcagcaaccttcactcctaaaatatgctcaacaacatcaccaattctggctattggtgtttcccctgatcga 20303007  T
Q  141 acatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcatattttcatggatacatgtattta 240  Q
    || || |||||| ||| || ||||||||| | ||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| | ||||| | | |    
T  20303006 acttgtaactccaact-ttccataaatatttcatacatgaagggactatttcataaatgaagaaccataacctgcatattttcatgaacacatgaaataa 20302908  T
Q  241 aattgaaatcaaatcaagtaatatatg----ttaaaat--taatactataggaatgaagatctataccatatcaataccagcattaacggaagtggagat 334  Q
    ||||     |||||| |||| ||||||    | || ||  ||||||||||  | ||||| |||||||||||||||||||||||| |||||||||| |||     
T  20302907 aatt-----caaatctagtagtatatggagttgaacatcttaatactata--attgaagttctataccatatcaataccagcatcaacggaagtgtagac 20302815  T
Q  335 gcgataacgataatctgaccaattaggttgacatctttaatcgatttcgtctcagacaaaaatcacaagtttcacataaataatttcaaagatgtcttct 434  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||      
T  20302814 gcgataacgataatctgacccatcaggttgacatctttaattgatttcgtctgagacaaaaatcacatgtttcacataaatcaattcaaagatgtctt-- 20302717  T
Q  435 tcttcattccaataaacaaattttggaatgtgtgctatcttgtctcattcctctcctgttctcttcctacactc---taatttttggcaaccatgaatat 531  Q
     |||||||||||||||||| |||||| || |||| ||||||||| |||||||| |||||||||| | |||||||   ||||||| |||||||||| ||||    
T  20302716 -cttcattccaataaacaatttttggtatatgtggtatcttgtcacattcctcgcctgttctctccttacactcctttaattttaggcaaccatggatat 20302618  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 522 - 598
Target Start/End: Complemental strand, 20302988 - 20302913
Alignment:
Q  522 ccatgaatatttcatacatgaaagggactatttcataaatgaagcaccataacctgcatattttcatgaatacatga 598  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  20302988 ccataaatatttcatacatgaa-gggactatttcataaatgaagaaccataacctgcatattttcatgaacacatga 20302913  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 10264978 - 10265043
Alignment:
Q  188 atttcataaatgaaggaccatcacctgcatattttcatggatacatgtatttaaattgaaatcaaa 253  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| ||  || |||| ||||||||||    
T  10264978 atttcatacatgaaagaccatcacctgcatattttcatgaatatataaatataaaatgaaatcaaa 10265043  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 7095769 - 7095845
Alignment:
Q  292 agatctataccatatcaataccagcattaacggaagtggagatgcgataacgataatctgaccaattaggttgacat 368  Q
    ||||||||||||||||||| ||||||  || |||||| |||| ||||||| ||| ||||| || ||  |||||||||    
T  7095769 agatctataccatatcaattccagcaccaatggaagtagagacgcgataatgatcatctggcccatatggttgacat 7095845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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