View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2230_high_6 (Length: 398)
Name: NF2230_high_6
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 41653433 - 41653063
Alignment:
| Q |
14 |
agaatcatagaattcaacgcaaaaacatatacggaccacaagaaagtcaccaaaaacaatgcataatttcacttacatttgcttatcaccaacaagatat |
113 |
Q |
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| T |
41653433 |
agaatcatagaattcaacgcaaaaacatatacggaccacaagaaagtcaccaaaaacaatgcataatttcacttacatttgcttatcaccaacaagatat |
41653334 |
T |
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| Q |
114 |
ccattcaacctctcaatagcagcatttgcagattcctctgtttcaaattgaacaaagccatatcctttactcttcccatcctcagacattacaactttac |
213 |
Q |
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| T |
41653333 |
ccattcaacctctcaatagcagcatttgcagattcctctgtttcaaattgaacaaagccatatcctttactcttcccatcctcagacattacaactttac |
41653234 |
T |
|
| Q |
214 |
ttgacaaaatattcccaaacttcttaaacatatcctctaatccagaattatctattgattcagctaaattctgtcacaacagcaaaaagaatcccatttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41653233 |
ttgacaaaatattcccaaacttcttaaacatatcctctaatccagaattatctattgattcagctaaattctgtcacaacagcaaaaagaatcccatttc |
41653134 |
T |
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| Q |
314 |
agaaacaataacctaaaccaaacactagtaatttaacaagtacataaaataaattaagcatagagagagat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41653133 |
agaaacaataacctaaaccaaacactagtaatttaacaagtacataaaataaattaagcatagagagagat |
41653063 |
T |
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