View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2230_high_8 (Length: 361)
Name: NF2230_high_8
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 52281838 - 52282164
Alignment:
| Q |
11 |
cacagatagcaggttacagaaagttttctcttttttgtaagagaaaccaggtcccacgtcacctcacactctactctgatcggaccacgaccaccgctgc |
110 |
Q |
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| T |
52281838 |
cacagatagcaggatacagaaagttttctcttttttgtaagagaagccaggtcccacgtcacctcacactctactctgatcggaccac------cgctgc |
52281931 |
T |
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| Q |
111 |
ccttcggcattcccgacgaataacccttctctagtaaccacctcaaagtaaannnnnnnnnnnnnnnnnnnnnncccattttgtttttctctgagcttaa |
210 |
Q |
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| T |
52281932 |
ccttcggcattcccgacgagtaacccttctctagtaaccacctcaaagtaaatctctctctctcttactc----cccattttgtttttctctgagcttaa |
52282027 |
T |
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| Q |
211 |
atagttgttgttttcgttctactgtagaattgcatgtattatgtgatacttttgttagtgattttcgccgttacaagtcatttttgttttcgattaagtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52282028 |
atagttgttgttttcgttctactgtagaattgcatgtattatgtgatacttttgttagtgattttcgccgttacaagtcatttttgttttcgattaagtt |
52282127 |
T |
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| Q |
311 |
atttttgcaaatgtggtttctcatattcgtacaaaat |
347 |
Q |
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| T |
52282128 |
atttttgcaaatgtggtttctcatattcgtactaaat |
52282164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 54789511 - 54789558
Alignment:
| Q |
300 |
tcgattaagttatttttgcaaatgtggtttctcatattcgtacaaaat |
347 |
Q |
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| T |
54789511 |
tcgattaagttatttttgcaaatgtggtttctcatattcgtacaaaat |
54789558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 54782278 - 54782229
Alignment:
| Q |
300 |
tcgattaagttatttttgcaaatgtggtttctc--atattcgtacaaaat |
347 |
Q |
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| T |
54782278 |
tcgattaagttatttttgcaaatgtggtttctcatatattcgtacaaaat |
54782229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 54789325 - 54789366
Alignment:
| Q |
121 |
tcccgacgaataacccttctctagtaaccacctcaaagtaaa |
162 |
Q |
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| T |
54789325 |
tcccgacgagtaacccttctctagtaaccacctcaaagtaaa |
54789366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 54782413 - 54782315
Alignment:
| Q |
186 |
ccattttgtttttctctgagcttaaatagttgttgttttcgtt--------ctactgtagaattgcatgtattatgtgatacttttgttagtgattttc |
276 |
Q |
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| T |
54782413 |
ccattttgttcttctctgagcttacgtagtttttgttttcgtttttttcttctattgtagaattgcatgtattatttgatacgtttgttgctgattttc |
54782315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 54789435 - 54789476
Alignment:
| Q |
235 |
tagaattgcatgtattatgtgatacttttgttagtgattttc |
276 |
Q |
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| T |
54789435 |
tagaattgcatgtattatgtgatacgtttgttgctgattttc |
54789476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 19295552 - 19295599
Alignment:
| Q |
300 |
tcgattaagttatttttgcaaatgtggtttctcatattcgtacaaaat |
347 |
Q |
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| T |
19295552 |
tcgattaagttatttttgcaaatgtggtttctcatattcgtacaaaat |
19295599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 19295365 - 19295406
Alignment:
| Q |
121 |
tcccgacgaataacccttctctagtaaccacctcaaagtaaa |
162 |
Q |
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| T |
19295365 |
tcccgacgagtaacccttctctagtaaccacctcaaagtaaa |
19295406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 19295476 - 19295517
Alignment:
| Q |
235 |
tagaattgcatgtattatgtgatacttttgttagtgattttc |
276 |
Q |
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| T |
19295476 |
tagaattgcatgtattatgtgatacgtttgttgctgattttc |
19295517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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