View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2230_low_14 (Length: 250)

Name: NF2230_low_14
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2230_low_14
NF2230_low_14
[»] chr5 (11 HSPs)
chr5 (1-224)||(30056292-30056515)
chr5 (1-224)||(30680705-30680928)
chr5 (1-224)||(30432430-30432656)
chr5 (91-220)||(37345101-37345230)
chr5 (9-224)||(30479893-30480108)
chr5 (119-224)||(30716874-30716979)
chr5 (119-224)||(30746133-30746238)
chr5 (1-94)||(30716975-30717068)
chr5 (1-94)||(30746044-30746137)
chr5 (9-89)||(30340327-30340407)
chr5 (1-60)||(37345045-37345104)
[»] chr4 (1 HSPs)
chr4 (42-224)||(20302924-20303106)
[»] chr6 (1 HSPs)
chr6 (188-224)||(10264978-10265014)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30056292 - 30056515
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 100  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30056292 actatgccttacccttgaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 30056391  T
Q  101 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30056392 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaattccgactctttcataaatatattatacatgaaagggctatttcataaatga 30056491  T
Q  201 aggaccatcacctgcatattttca 224  Q
    ||||||||||||||||||||||||    
T  30056492 aggaccatcacctgcatattttca 30056515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30680928 - 30680705
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30680928 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttcattcctaatatttcttaac 30680829  T
Q  101 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatga 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30680828 aacgtcgccaattccggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatga 30680729  T
Q  201 aggaccatcacctgcatattttca 224  Q
    ||||||||||||||||||||||||    
T  30680728 aggaccatcacctgcatattttca 30680705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30432430 - 30432656
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 100  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30432430 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttcattcctaatattgcttaac 30432529  T
Q  101 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaat---atattatacatgaaagggctatttcataaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| ||||||||||||||    
T  30432530 aacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatgtattattatacatgaaacggctatttcataaa 30432629  T
Q  198 tgaaggaccatcacctgcatattttca 224  Q
    |||||||||||||||||||||||||||    
T  30432630 tgaaggaccatcacctgcatattttca 30432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 37345101 - 37345230
Alignment:
Q  91 attgcttaacaacgtcgccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatt 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  37345101 attgcttaacaacgtagccaattctggctattggtgtttcccctgatcgaacatgaaactctgactcttgcattaatatattatacatgaaagggctatt 37345200  T
Q  191 tcataaatgaaggaccatcacctgcatatt 220  Q
    ||||||||||||||||||||||||||||||    
T  37345201 tcataaatgaaggaccatcacctgcatatt 37345230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 30479893 - 30480108
Alignment:
Q  9 ttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatat-tgcttaacaacgtcg 107  Q
    |||||| ||||  ||| |||||||| | | || ||||||||| ||||||||||||||||||||||||||| ||| |||||| || |||| ||||||||||    
T  30479893 ttacctggaaaccaacgataaccagtaaagagatatcagttaaaggaaattgaaatcttcagcagcaaacatcactcctaaaatatgctcaacaacgtcg 30479992  T
Q  108 ccaattctggctattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggacca 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||| | ||||||||| || ||||||||||||||||||| ||    
T  30479993 ccaattctggctattggtgtttcccctgatcgaacttgaaactccaact-ttccataaatatttcatacatgaagggactatttcataaatgaaggatca 30480091  T
Q  208 tcacctgcatattttca 224  Q
    | |||||||||||||||    
T  30480092 taacctgcatattttca 30480108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 30716979 - 30716874
Alignment:
Q  119 tattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 218  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30716979 tattggtgtttcccgtgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 30716880  T
Q  219 ttttca 224  Q
    ||||||    
T  30716879 ttttca 30716874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 30746133 - 30746238
Alignment:
Q  119 tattggtgtttcccctgatcgaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 218  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30746133 tattggtgtttcccctgatcaaacatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcata 30746232  T
Q  219 ttttca 224  Q
    ||||||    
T  30746233 ttttca 30746238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 30717068 - 30716975
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattg 94  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30717068 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgaaatcttcagcagcaaacttcattcctaatattg 30716975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30746044 - 30746137
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatattg 94  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  30746044 actatgccttaccttgaaattaaccataaccagcaaagagctatcagttaaaggaaattgatatcttcagcagcaaacttcattcctaatattg 30746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 30340407 - 30340327
Alignment:
Q  9 ttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaa 89  Q
    |||||| ||||  ||| |||||||||| | || ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  30340407 ttacctggaaaccaacgataaccagcaaagagatatcagttaaaggaaattgaaatcttcagcagcaaacttcactcctaa 30340327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37345045 - 37345104
Alignment:
Q  1 actatgccttaccttgaaattaaccataaccagcacaaagctatcagttagaggaaattg 60  Q
    |||||||||||||||||||||||||||||| |||| | | |||||||||| |||||||||    
T  37345045 actatgccttaccttgaaattaaccataacaagcaaagaactatcagttaaaggaaattg 37345104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 20303106 - 20302924
Alignment:
Q  42 tatcagttagaggaaattgaaatcttcagcagcaaacttcattcctaatat-tgcttaacaacgtcgccaattctggctattggtgtttcccctgatcga 140  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||||| || |||| |||||| || |||||||||||||||||||||||||||||||||    
T  20303106 tatcagttaaaggaaattgaaatcttcagcagcaaccttcactcctaaaatatgctcaacaacatcaccaattctggctattggtgtttcccctgatcga 20303007  T
Q  141 acatgaaactccgactctttcataaatatattatacatgaaagggctatttcataaatgaaggaccatcacctgcatattttca 224  Q
    || || |||||| ||| || ||||||||| | ||||||||| || ||||||||||||||||| ||||| |||||||||||||||    
T  20303006 acttgtaactccaact-ttccataaatatttcatacatgaagggactatttcataaatgaagaaccataacctgcatattttca 20302924  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 10264978 - 10265014
Alignment:
Q  188 atttcataaatgaaggaccatcacctgcatattttca 224  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  10264978 atttcatacatgaaagaccatcacctgcatattttca 10265014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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