View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2230_low_17 (Length: 226)
Name: NF2230_low_17
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 47222804 - 47222670
Alignment:
| Q |
73 |
tgtaatgaagtctaattgatgtcactaattctaaaatgacattcacttatatcattaatttacttcaaaactatagtaatagacgtggctatttcttttt |
172 |
Q |
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| T |
47222804 |
tgtaatgaagtctaattgatgtcactaattctaaaaagacattcacttatatcattaatttacttcaaaactatagtaatagacgtcgctatttcttttt |
47222705 |
T |
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| Q |
173 |
agaaatggaaggattccaacttatttggtgggatt |
207 |
Q |
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| T |
47222704 |
agaaatggaaggattccaacttatttggtgggatt |
47222670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 47222840 - 47222804
Alignment:
| Q |
17 |
cagagatacaattcattccttaaaataaatggacatt |
53 |
Q |
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| T |
47222840 |
cagagatgcaattcattccttaaaataaatggacatt |
47222804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 36881134 - 36881166
Alignment:
| Q |
119 |
ttatatcattaatttacttcaaaactatagtaa |
151 |
Q |
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| T |
36881134 |
ttatatcatttatttacttcaaaactatagtaa |
36881166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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