View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2230_low_5 (Length: 552)
Name: NF2230_low_5
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 172 - 552
Target Start/End: Complemental strand, 642406 - 642030
Alignment:
| Q |
172 |
catcacccttttcagcattgtattgcatggttattgnnnnnnnctggtaaagttcaaattttgcatgttgttttgcttgaattgaatttgtatcaatttt |
271 |
Q |
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| T |
642406 |
catcacccttttcagcattgtattgcatggttattgtttttt-ctggtaaagttcaaattttgcatgttgttttgcttgaattgaatttgtgtcaatttt |
642308 |
T |
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| Q |
272 |
agnnnnnnnggatcttatttttgttgatgagattgaattgagtttgtttattggaaaattgggttgttgaagttttgtcattatctttcttggcttcact |
371 |
Q |
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| T |
642307 |
agtttttttggatcttatttttgttgatgagattggattgagtttgtttattggaaaattgggttgttgaagttttgtcattatctttcttggtgacact |
642208 |
T |
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| Q |
372 |
ttgctccatttcctataaaggttattcttttactttactattacgttttgtgatatttgtgtcctttaaaggtttgcttacaattgaaaattttctcttt |
471 |
Q |
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| T |
642207 |
ttgctccatttcctataaaggttattcttttactttactattacgttttgtgatatttgtgtcctttgaagatttgcttacaattg---attttctcttt |
642111 |
T |
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| Q |
472 |
catcggtggaaatggaatatatgtatttttgctacattacctctttagattcataagcaacttcattcgataaactaaggt |
552 |
Q |
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| T |
642110 |
cattggtggaaatgaaatataagtatttttgctatattgcctctttagattcataagcaacttcattcaataaactaaggt |
642030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 642560 - 642466
Alignment:
| Q |
18 |
atctcaaaaggttagaaattcaatgtttcttttgaactcttatagtactatttatatgatctagatccaacttcattaatttcttatgtttcacc |
112 |
Q |
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| T |
642560 |
atctcaaaaggttagaaattcaatgtttcttttgaactcttatagtactatttatatgatctagatccaacttcatgaatttcttatgtttcacc |
642466 |
T |
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