View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2230_low_6 (Length: 539)
Name: NF2230_low_6
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 9966470 - 9966980
Alignment:
| Q |
17 |
atttccacaaaactaccaaaatggtcactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaag |
116 |
Q |
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| T |
9966470 |
atttccacaaaactaccaaaatggccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaag |
9966569 |
T |
|
| Q |
117 |
tccgtacatagtagttgatttctacggtcaaagaagaaaaactcgaaccttggttcgcaacttgaacccggtttggaatgaaacattgtcgtttaatgtt |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966570 |
tctgtacatagtagttgatttctacggtcaaagaagaaaaactcgaaccttggttcgcgacttgaacccggtttggaatgaaacattgtcgtttaatgtt |
9966669 |
T |
|
| Q |
217 |
ggagaacgtaacgaaattttcggtgatgtttttgaacttgatgtttatcatgataagcaacacggtccaacccggagagaaaactctctgctgggtcaag |
316 |
Q |
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| T |
9966670 |
ggagaacgtaacgaaatttttggtgatgttttggaacttgatgtttatcatgatatgcaacaccgtccaacccggagagaaaactc---gctgggtcaag |
9966766 |
T |
|
| Q |
317 |
ttcgacttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcaaggaaaagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9966767 |
ttcgacttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcgaggaaaagt |
9966866 |
T |
|
| Q |
417 |
tggcttgaaaatttactatgttgatgaagaaattcctcctcgaccatcggcacctgtgccggaaaatccaccggcaccatcgtctgatccaccttcagga |
516 |
Q |
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| T |
9966867 |
tggcttgaaaatttactatgttgatgaagaaattcctcctcgaccatcggcacctgtgccggaaaatccaccgacaccatcgtctgagccaccttccgta |
9966966 |
T |
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| Q |
517 |
aaagtagaataatc |
530 |
Q |
| |
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||||||||| |||| |
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| T |
9966967 |
aaagtagaagaatc |
9966980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 9936301 - 9936814
Alignment:
| Q |
17 |
atttccacaaaactaccaaaatggtcactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaag |
116 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9936301 |
atttccacaaaactaccaaaatggccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaag |
9936400 |
T |
|
| Q |
117 |
tccgtacatagtagttgatttctacggtcaaagaagaaaaactcgaaccttggttcgcaacttgaacccggtttggaatgaaacattgtcgtttaatgtt |
216 |
Q |
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||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
9936401 |
tccatacatagtaattgatttccacggtcaaagaagaaaaactcgaaccttggttcgcgacttgaacccggtttggaatgaaacattgtcatttaatgtt |
9936500 |
T |
|
| Q |
217 |
ggagaacgtaacgaaattttcggtgatgtttttgaacttgatgtttatcatgataagcaacacggtccaacccggagagaaaactctctgctgggtcaag |
316 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||| | | ||||| |||||||||||||||||||||| |||||||||| |
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| T |
9936501 |
ggagaacgtaacgaaattttaggtgatgttttggaacttgatgtttatcatgaaatgaaacacagtccaacccggagagaaaactc---actgggtcaag |
9936597 |
T |
|
| Q |
317 |
ttcgacttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcaaggaaaagt |
416 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9936598 |
ttcgacttagctcgacacagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttcaaggaaaagt |
9936697 |
T |
|
| Q |
417 |
tggcttgaaaatttactatgttgatgaagaaat---tcctcctcgaccatcggcacctgtgccggaaaatccaccggcaccatcgtctgatccaccttca |
513 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
9936698 |
tggcttgaaaatttactatgttgatgaagaaattcctcctcctccaccaccggtacctgtgccggaaaatccaccggcaccatcgtctgagccaccatcc |
9936797 |
T |
|
| Q |
514 |
ggaaaagtagaataatc |
530 |
Q |
| |
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|||||||||||| |||| |
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| T |
9936798 |
ggaaaagtagaagaatc |
9936814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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