View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2230_low_7 (Length: 452)
Name: NF2230_low_7
Description: NF2230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2230_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 146 - 436
Target Start/End: Complemental strand, 9424592 - 9424302
Alignment:
| Q |
146 |
ttgacttatagatctcttttatattttgtcacaaaggatgcatgaaacaatagatcatatatattttctgatttacattccattgttacattatatttgg |
245 |
Q |
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| T |
9424592 |
ttgacttatagatctcttttatattttgtcacaaaggatgcatgaaacaatagatcatatatattttctgatttacattccattgttacattatatttgg |
9424493 |
T |
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| Q |
246 |
tcatgaagagagaacaaaaacaatagttagcttgagaggaaagtataatataaccataaggagattgggagataaatgaacttacaatatcaccattaga |
345 |
Q |
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| T |
9424492 |
tcatgaagagagaacaaaaacaatagttagcttgagaggaaagtataatataaccataaggagattgggagataaatgaacttacaatatcaccattaga |
9424393 |
T |
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| Q |
346 |
aattcctaagttgaccaaagcagaagcaagcttgagacatctttcataggtttctctccaagaaaatctaacatgatcattgtagatgatg |
436 |
Q |
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| T |
9424392 |
aattcctaagttgaccaaagcagaagcaagcttgagacatctttcataggtttctctccaagaaaatctaacatgatcattgtagatgatg |
9424302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 9424896 - 9424836
Alignment:
| Q |
30 |
ataattcaattaccaaactctagcctatgtaccctaaatatacactatataactctataagc |
91 |
Q |
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| T |
9424896 |
ataattctattaccaaactctatcctatgtaccctaaatatacactatat-actctataagc |
9424836 |
T |
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