View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2231_high_1 (Length: 483)
Name: NF2231_high_1
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2231_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Complemental strand, 38398985 - 38398541
Alignment:
| Q |
16 |
gattatgcatgcatgtgttgttggtagaaaagagactattaattcaactacttgttatattttctgataatttatcactttctatttgatcccattggaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38398985 |
gattatgcatgcatgtgttgttggtagaaaagagactatta---------cttgtcatattttctgat---ttatcactttctatttgatcccattggaa |
38398898 |
T |
|
| Q |
116 |
cgattaattttgtttttcatgccttgtaggttatgttggcattaaatttgaggaccaatgtgttaatatttctttagtgaattttaattgtattaatgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38398897 |
tgattaattttgtttttcatgccttgtagattatgttggcattaaatttgaggaccaatgtgttaatatttctttagtgaattttaattgtattaatgtt |
38398798 |
T |
|
| Q |
216 |
tatatcgtttattttcttattggaccttatagtggggtggacaatattcttcatttgtgtaggttataaataataatgtcgtgataatttttcatttaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38398797 |
tatatcgtttattttcttattggaccttatagtggggtggacaatattcttcatttgtgtaggttataaataataatgtcgtgataatttttcatttaat |
38398698 |
T |
|
| Q |
316 |
taatgcattagttttgatattgaatattggattgaattgggggttagttttgcttctcaaggttcttggatgaaccaattctaatcaataacattcttat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38398697 |
taatgcattagttttgatattgaatattggattgaattgggggttagttttgcttctcaaggttcttggatgaaccaattctaatcaataacattcttat |
38398598 |
T |
|
| Q |
416 |
---tcttgtcgtggatccgcattcgatcttatagttcatcataaatgcggaaatcgt |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38398597 |
tcttcttgtcgtggatccgcattcgatcttatagttcatcataaatgcggaaatcgt |
38398541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 41119083 - 41119129
Alignment:
| Q |
166 |
aggaccaatgtgttaatatttctttagtgaattttaattgtattaat |
212 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
41119083 |
aggaccgatatgttaatatttctttagtgaattttgattgtaataat |
41119129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 15010715 - 15010672
Alignment:
| Q |
410 |
tcttattcttgtcgtggatccgc-attcgatcttatagttcatc |
452 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
15010715 |
tcttattcttgtagtggatccgcgattcgatcttatagttcatc |
15010672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University