View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2231_low_1 (Length: 517)

Name: NF2231_low_1
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2231_low_1
NF2231_low_1
[»] chr3 (10 HSPs)
chr3 (20-492)||(225007-225483)
chr3 (20-457)||(210525-210953)
chr3 (264-333)||(197599-197668)
chr3 (20-174)||(222073-222227)
chr3 (264-333)||(204300-204369)
chr3 (20-174)||(217128-217282)
chr3 (64-174)||(197294-197404)
chr3 (104-174)||(204789-204859)
chr3 (268-310)||(223560-223602)
chr3 (92-174)||(226321-226403)
[»] chr5 (3 HSPs)
chr5 (23-172)||(29838406-29838555)
chr5 (366-459)||(34122143-34122236)
chr5 (272-317)||(29839309-29839354)
[»] chr4 (2 HSPs)
chr4 (264-333)||(6904121-6904190)
chr4 (104-174)||(6903634-6903704)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Original strand, 225007 - 225483
Alignment:
Q  20 ctgcaaactgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaac 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225007 ctgcaaattgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaac 225106  T
Q  120 attcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagttattatcacttgtttaattgattataaaacaactcatcagttata 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225107 attcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagttattatcacttgtttaattgattataaaacaactcatcagttata 225206  T
Q  220 ctattacaannnnnnnnnnnnnnnnnn----tagtgaattttacaatttctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggatt 315  Q
    |||||| ||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225207 ctattagaaagagagagagagagagagagagtagtgaattttacaatttctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggatt 225306  T
Q  316 ccctaacttctttttctgcctgcaattcaataagtgataagtgtcaatgcttcacacattcagatcaccaattcacattataaacaaagaataatgaact 415  Q
    |||||| |||  | |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225307 ccctaatttccatctctgcctgcaattcaataagtgataagtgtcaacacttcacacattcagatcaccaattcacattataaacaaagaataatgaact 225406  T
Q  416 cgtatgtggcgtgacgtgtgagcggtttatgttgcgaaagaaaacacacttaggatatttgaaattagaaaatgaga 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225407 cgtatgtggcgtgacgtgtgagcggtttatgttgcgaaagaaaacacacttaggatatttgaaattagaaaatgaga 225483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 20 - 457
Target Start/End: Original strand, 210525 - 210953
Alignment:
Q  20 ctgcaaactgtttccatt---tgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagc 116  Q
    |||||||||||| |||||   |||||||||||||||||||||| |||| ||||||||| |||| || ||||  |  |||||| || ||||||| ||||||    
T  210525 ctgcaaactgttgccattccttgttgcaaaagtaaacatcctcgccacatttcttcaagtccatttcccaatcacaaccatcgggaacagtaactgtagc 210624  T
Q  117 aacattcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagttattatcacttgtttaattgattataaaacaactcatcagtt 216  Q
    |||||||| ||||||  ||||| | ||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  210625 aacattctcgagttcattcccaaacattgttataaagttttctggaattctctgcagttatcatcacttgtttaattgattataaaataactcatcagtt 210724  T
Q  217 atactattacaannnnnnnnnnnnnnnnnntagtgaattttacaatttctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattc 316  Q
    ||||||||| ||                   || ||||||||||||||||||||||| |||||||||||||||||| || || ||||||||| |||||||    
T  210725 atactattagaaagagaga------------agagaattttacaatttctttgtcataaatgggtgagggaagtatagcttttttaaaatgtatggattc 210812  T
Q  317 cctaacttctttttctgcctgcaattcaataagtgataagtgtcaatgcttcacacattcagatcaccaattcacattataaacaaagaataatgaactc 416  Q
    ||||||||| || || ||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||| ||||| |||||||||||||||||||     
T  210813 cctaacttccttctccgcctgcaattcaataagtgataagtgttaacgcttctcacattcagaacaccaattcgcattacaaacaaagaataatgaactt 210912  T
Q  417 gtatgtggcgtgacgtgtgagcggtttatgttgcgaaagaa 457  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  210913 gtatgtggcgtgacgtgtgagtggttcatgttgcggaagaa 210953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 197599 - 197668
Alignment:
Q  264 tctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctg 333  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  197599 tctttgtcatgaatgggcgagggaagtatggccttcttgaaatgtttggattcccttacttccttttctg 197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 222073 - 222227
Alignment:
Q  20 ctgcaaactgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaac 119  Q
    |||||||||||| ||||||||||||||||||||| || |  || | |||||||| ||||| || ||||  |   ||||| || |||||||||||||||||    
T  222073 ctgcaaactgttgccatttgttgcaaaagtaaacgtcgttgccgcatttcttcagttccatttcccaatcacagccatcgggaacagtaattgtagcaac 222172  T
Q  120 attcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagt 174  Q
    ||||||||||||  ||||| || || |||||||  | || |||||||||||||||    
T  222173 attcttgagttcattcccaaatctttttataaatccatctggaattctctgcagt 222227  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 204369 - 204300
Alignment:
Q  264 tctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctg 333  Q
    ||||||||||||||||| |||||||||||| || |||||||||||| ||||||||| |||||||||||||    
T  204369 tctttgtcatgaatgggcgagggaagtatgtccatcttaaaatgttcggattcccttacttctttttctg 204300  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 217128 - 217282
Alignment:
Q  20 ctgcaaactgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaac 119  Q
    |||||||||||| ||||||||||||||||||||| || |  || | |||||||| || || || ||||  |  |||||| || |||||||||||||||||    
T  217128 ctgcaaactgttgccatttgttgcaaaagtaaacgtcattgccgcatttcttcagtttcatttcccaatcacaaccatcgggaacagtaattgtagcaac 217227  T
Q  120 attcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagt 174  Q
    ||||||||||||  ||||| || || |||||||  | || |||||||||| ||||    
T  217228 attcttgagttcattcccaaatctttttataaattcatctggaattctctacagt 217282  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 197294 - 197404
Alignment:
Q  64 cgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccatatattgttataaagacttcaggaa 163  Q
    ||||||||||||  || |||||||  | ||||||| || || |||| ||||||||| |||| ||||||  ||||| | |||||||||||| |||||||||    
T  197294 cgtttcttcaatctcattttccaatcacgaccatcgggaactgtaactgtagcaactttctcgagttcattcccaaacattgttataaagtcttcaggaa 197393  T
Q  164 ttctctgcagt 174  Q
    |||||||||||    
T  197394 ttctctgcagt 197404  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 204859 - 204789
Alignment:
Q  104 cagtaattgtagcaacattcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagt 174  Q
    |||||| |||||||||||||||||||||  ||||| || ||||||||||  | || | |||||||||||||    
T  204859 cagtaactgtagcaacattcttgagttctatcccaaatcttgttataaactcatctgaaattctctgcagt 204789  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 223560 - 223602
Alignment:
Q  268 tgtcatgaatgggtgagggaagtatggccttcttaaaatgttt 310  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||    
T  223560 tgtcatgaatgggtgagggaaggatggctttcataaaatgttt 223602  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 226321 - 226403
Alignment:
Q  92 gaccatccggtacagtaattgtagcaacattcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagt 174  Q
    ||||||| || |||||||| ||||||||||| | ||||||  ||||| || ||||||||||  | || |||||||||||||||    
T  226321 gaccatcgggaacagtaatggtagcaacattgtcgagttcattcccaaatcttgttataaactcatctggaattctctgcagt 226403  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 29838406 - 29838555
Alignment:
Q  23 caaactgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacatt 122  Q
    |||||| || |||||||||||||||| |||||| ||| ||||||||||||| ||||| ||||||   | ||||||| || ||||||||||||||||||||    
T  29838406 caaactcttgccatttgttgcaaaagaaaacattctcgccacgtttcttcagttccattttccatacacgaccatctggaacagtaattgtagcaacatt 29838505  T
Q  123 cttgagttcgctcccatatattgttataaagacttcaggaattctctgca 172  Q
     ||||||||  | ||| || ||||||||||  | || |||||||||||||    
T  29838506 attgagttcatttccaaatcttgttataaattcatctggaattctctgca 29838555  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 459
Target Start/End: Complemental strand, 34122236 - 34122143
Alignment:
Q  366 ttcacacattcagatcaccaattcacattataaacaaagaataatgaactcgtatgtggcgtgacgtgtgagcggtttatgttgcgaaagaaaa 459  Q
    ||||||||||||||||||  |||||  ||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||| |||||||||    
T  34122236 ttcacacattcagatcactgattcatgttataaacaaagaataatgaacttgtatgtggcatgacgtgtgagaggttcatgttgtgaaagaaaa 34122143  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 29839309 - 29839354
Alignment:
Q  272 atgaatgggtgagggaagtatggccttcttaaaatgtttggattcc 317  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||    
T  29839309 atgaatgggtgagggaagtatggctttcataaaatgttttgattcc 29839354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 6904121 - 6904190
Alignment:
Q  264 tctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctg 333  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  6904121 tctttgtcatgaatgggcgagggaagtatggccatcttaaaatgttcggattcccttacttctttttctg 6904190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 6903634 - 6903704
Alignment:
Q  104 cagtaattgtagcaacattcttgagttcgctcccatatattgttataaagacttcaggaattctctgcagt 174  Q
    |||||| |||||||||||||||||||||  ||||| || ||||||||||  | || | |||||||||||||    
T  6903634 cagtaactgtagcaacattcttgagttctatcccaaatcttgttataaactcatctgaaattctctgcagt 6903704  T

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