View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2231_low_10 (Length: 207)

Name: NF2231_low_10
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2231_low_10
NF2231_low_10
[»] chr6 (1 HSPs)
chr6 (42-198)||(12345576-12345733)
[»] chr5 (5 HSPs)
chr5 (42-133)||(4085333-4085425)
chr5 (1-45)||(7782671-7782715)
chr5 (1-45)||(7783168-7783212)
chr5 (1-45)||(29240871-29240915)
chr5 (1-45)||(35169140-35169184)
[»] chr8 (2 HSPs)
chr8 (56-131)||(3417824-3417901)
chr8 (1-45)||(24982823-24982867)
[»] chr7 (1 HSPs)
chr7 (1-45)||(34951683-34951727)
[»] chr4 (1 HSPs)
chr4 (1-45)||(707618-707662)
[»] chr1 (3 HSPs)
chr1 (1-45)||(23730034-23730078)
chr1 (1-45)||(34609939-34609983)
chr1 (1-45)||(52348127-52348171)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 12345733 - 12345576
Alignment:
Q  42 aaaaccatccctcttttttgtgaatagaatgaaaaccatttaaagttaattgaattgatagtctattctatgtgaacaac-aatccagaattgttgtgat 140  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  12345733 aaaaccacccctcttttttgtgaatagaatgaaaaccctttaaagttaattgaattgatagtttattctatgtgaacaacaaatccagaattgttgtgat 12345634  T
Q  141 ctgtaattgagattagaattgattaacaaactttgtacacatgcttccccttgacaca 198  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  12345633 ctgtaattgagattggaattgattaacaaactttgtacacatgcttccgcttgacaca 12345576  T

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Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 4085333 - 4085425
Alignment:
Q  42 aaaaccatccctcttttttgtgaatagaatgaaaaccatttaaagttaattgaattgatagtctattctatgtgaacaac-aatccagaattg 133  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  4085333 aaaaccacccctcttttttgtgaatagaatgaaaaccctttaaaattaattgaattggtagtttattctatgtgaacaacaaatccagaattg 4085425  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7782715 - 7782671
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||||||||| |||||||||| |||||||    
T  7782715 ataaaaatattgcgaataaatgtggaagtgacacgtggcataaaa 7782671  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7783212 - 7783168
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||||||||| |||||||||| |||||||    
T  7783212 ataaaaatattgcgaataaatgtggaagtgacacgtgtcataaaa 7783168  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29240915 - 29240871
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||    
T  29240915 ataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 29240871  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35169184 - 35169140
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    |||||||||||||||||||| ||| | ||||| ||||||||||||    
T  35169184 ataaaaatactgtgaataaacgtgaaagtgactcgtgacataaaa 35169140  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 3417824 - 3417901
Alignment:
Q  56 tttttgtgaatagaatgaaaaccatttaaa-gttaattgaattgatagtctattctatgtgaacaac-aatccagaat 131  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  3417824 tttttgtgaatagaatgaaaaccctttaaaagttaattgaattggtagtttattctatgtgaacaacaaatccagaat 3417901  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24982867 - 24982823
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  24982867 ataaaaatattgtgaataaacgtggaagtgacacgtgacataaaa 24982823  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34951683 - 34951727
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||    
T  34951683 ataaaaatattgagaataaacgtggaagtgacacgtgacataaaa 34951727  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 707662 - 707618
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||    
T  707662 ataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 707618  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23730078 - 23730034
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| |||||||||| ||| | ||||||||||||||||||    
T  23730078 ataaaaatattgtgaataaacgtgaaagtgacacgtgacataaaa 23730034  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34609939 - 34609983
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||    
T  34609939 ataaaaatattgagaataaacgtggaagtgacacgtgacataaaa 34609983  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52348171 - 52348127
Alignment:
Q  1 ataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 45  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||    
T  52348171 ataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 52348127  T

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