View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2231_low_11 (Length: 204)
Name: NF2231_low_11
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2231_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 50707724 - 50707537
Alignment:
| Q |
1 |
tcacggaagagaaccattgaaatcaagaaagcaaagccatcgaacaagcgccgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50707724 |
tcacggaagaaaaccattgaaatcaagaaagcaaagccatcgaacaagcggcgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacag |
50707625 |
T |
|
| Q |
101 |
aattatccattctatgcaatgcaaaaaccgcactgatcatcacttctccaaacaaaaatctccatgcatgcggataccctaaccatga |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50707624 |
aattatccattctatgcaatgcaaaaaccgcactgatcatcacttcaccaaacaaaaatctccatgcatgcggataccctaaccatga |
50707537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 8167646 - 8167505
Alignment:
| Q |
12 |
aaccattgaaatcaagaaagcaaagccatcgaacaagcgccgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccatt |
111 |
Q |
| |
|
||||||| |||||||||||||| | | ||| ||||||| || |||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| || |
|
|
| T |
8167646 |
aaccattaaaatcaagaaagcagaacaatcaaacaagcccctcgataccttctcaaaacgcaaactagggctcttcaacaaagttacagaactatctatc |
8167547 |
T |
|
| Q |
112 |
ctatgcaatgcaaaaaccgcactgatcatcacttctccaaac |
153 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
8167546 |
ctatgcaatgcaaaaactgcaatgatcatcacttcaccaaac |
8167505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 8999268 - 8999198
Alignment:
| Q |
54 |
tgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaa |
124 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||||||||| ||| || ||| |||| |||||||||||| |
|
|
| T |
8999268 |
tgataccttctcaaaacgcaaattaggactcttcaacaaagtcacataactattcattttatgcaatgcaa |
8999198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University