View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2231_low_2 (Length: 511)
Name: NF2231_low_2
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2231_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 44 - 507
Target Start/End: Complemental strand, 30593676 - 30593201
Alignment:
| Q |
44 |
atatgatcatccgcagtcacattcttaccataatatgatgggatcacagtcgtgtgaaatccggtca---tggattgtgatcggatcgtctttaa----c |
136 |
Q |
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| T |
30593676 |
atatgatcatccgcagtcacattcttaccataatatgatgggatcattgtcgtgtgcaatccg-tcacaataaattgtgatcggatcgtctttaattaac |
30593578 |
T |
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| Q |
137 |
aatgaacttaacttgatcttaa-------ccgtctatttaaattggactaaaactaaaaaattgcaaatacgcagcactaacgtgaaaatgactccacta |
229 |
Q |
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| T |
30593577 |
agtgaacttaacttaatcttaagtcttaaccgtctatttaaattggaataaaactaaaatattgcaaatacgccgcactaaggtggaaatgactccacta |
30593478 |
T |
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| Q |
230 |
aactaactaccacatccgtaaccacgtcaataagtaaaatctctaaattactagagaaatttcttattcaattcattactttttggacttgtggacaaac |
329 |
Q |
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||||||| |||||| | |||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||| |
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| T |
30593477 |
aactaacaaccacacctgtaaccgcatcaataagtaaaatctctaa-ttactagagaaatttcatattcaattcattacttttcgaacttgtggacaaag |
30593379 |
T |
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| Q |
330 |
agagaaagggaaattgaaatgtatgtatagacgagggttcattgcattaaggaaaagagcccctacactccacacagaaactgagagacataaggcacgt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30593378 |
agagaaagggaaattgaaatgtatgtatagacgagggttcattgcattaaggaaaagagcccctacactccacacagaaactgagagacataaggcacgt |
30593279 |
T |
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| Q |
430 |
actacgtacagttagtgcctaactcactagtagtagcagtaccacacactacccatattccaagctttcatctcactc |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30593278 |
actacgtacagttagtgcctaactcactagtagtagcagtaccacacactacccatattccaagctttcatttcactc |
30593201 |
T |
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