View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2231_low_3 (Length: 506)
Name: NF2231_low_3
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2231_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 25366199 - 25366679
Alignment:
| Q |
18 |
gtaatgtggcattggtagtttttctgctcaacaaaaatcaaaatctctttagtatgtagtttttcaatggatttgatacgtcttactcgtgtagaatttg |
117 |
Q |
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| T |
25366199 |
gtaatgtggcattggtagtttttctgctaaaaaaaaatcaaaatatctttagtatgtagtttttcaatggatttgatacgtcttactcgtgtagaatttg |
25366298 |
T |
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| Q |
118 |
taattagaatctgttccatctttctgacttgtttttgctttacattccctaattataggtttat---atgtcgtctgattttaagttagtcattgctact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25366299 |
taattagaatctgttccatctttctgacttgtttttgctttacattccctaattataggtttatgatatgtcgtctgattttaagttagtcattgctact |
25366398 |
T |
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| Q |
215 |
gatcatgactctgaagagcccgagttaggcaacactataggttcaaacatatcactagatgaaaagggtaaggcggtgcacacaactttcaatggaattc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25366399 |
gatcatgactctgaagagcccgagttaggcaacactataggttcaaacatatcactagatgaaaagggtaaggcggtgcacacaactttcaatggaattc |
25366498 |
T |
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| Q |
315 |
gtgaccaaggaaatttttcgccaaagaactatgtaacaaatgcagagcgaagagctttgtatgataggtgtgaaacacatttccttttccacagtttttg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25366499 |
gtgaccaaggaaatttttcgccaaagaactatgtaacaaatgcagagcgaagagctttgtatgataggtgtgaaacacatttccttttccacagtttttg |
25366598 |
T |
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| Q |
415 |
ttcataaatattctgtttcaattaaattacacttctggcttattttgatgtactaatgcttttcctttttgttgatttcat |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25366599 |
ttcataaatattctgtttcaattaaattacacttctggcttattttgatgtactaatgcttttcctttttgttgatttcat |
25366679 |
T |
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