View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2231_low_8 (Length: 269)
Name: NF2231_low_8
Description: NF2231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2231_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 47814315 - 47814081
Alignment:
| Q |
16 |
ctgacatgccttcgatcagccactaggccggggatgttaatcaactgtgccaaaaccctagacatgattcttagattgttcactgcattcattgatgaaa |
115 |
Q |
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| T |
47814315 |
ctgacatgccttcgaccagccactaggccggggatgttaatcgactgtgccaaaaccctagacatgattcttagattgttcactgcattcattgatgaaa |
47814216 |
T |
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| Q |
116 |
aaatatattatcaaacaagtaattcacatgaaatatataatt-aaatgtgttcttgcattcatacaatctgtgtacagttaaattacatttcttttgaaa |
214 |
Q |
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| T |
47814215 |
aaatatattatcaaacaagtaattcacatgaaatatataattaaaatgtgttcttgcattcatacaatctgtgtacagttaaattacatttcttttgaaa |
47814116 |
T |
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| Q |
215 |
cttcccactatttatgaaggctcaaagtgaaagtt |
249 |
Q |
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| T |
47814115 |
cttcccactatttatgaaggctcaaagtgaaagtt |
47814081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 47378726 - 47378484
Alignment:
| Q |
17 |
tgacatgccttcgatcagccactaggccggggatgttaatcaactgtgccaaaaccctagacatgattcttagattgttcactgcattcattgatgaaaa |
116 |
Q |
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|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
47378726 |
tgacatgccttcgaccagccactaggccggggacattaatcgactgtgccaaaaccctagacatgattccggaattgttcactgcattcgttgatgaaaa |
47378627 |
T |
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| Q |
117 |
aatatattatcaaacaagtaattcacatgaaata-------------tataattaaatgtgttcttgcattcatacaatctgtgtacagttaaattacat |
203 |
Q |
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| T |
47378626 |
aatatatcagcaaacatgtaattcaaatgaaataacacactgccccgtataattaaatgtgtacttgcattcttacaataaatgtacagataaattacat |
47378527 |
T |
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| Q |
204 |
ttcttttgaaacttcccactatttatgaaggctcaaagtgaaagtt |
249 |
Q |
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| T |
47378526 |
ttcttttgaaacttcccacaa---acgagggctcaaagtgaaagtt |
47378484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 40241821 - 40241693
Alignment:
| Q |
17 |
tgacatgccttcgatcagccactaggccggggatgttaatcaactgtgccaaaaccctagacatgattcttagattgttcactgca-ttcattgatgaaa |
115 |
Q |
| |
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|||||||||||||| |||||||||| || |||| |||||| |||| |||||| ||||||||||||||| | ||||||||||| || ||||| || ||| |
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| T |
40241821 |
tgacatgccttcgaccagccactagaccagggacattaatcgactgcgccaaagccctagacatgattcctggattgttcactacatttcatccataaaa |
40241722 |
T |
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| Q |
116 |
aaatatattatcaaacaagtaattcacat |
144 |
Q |
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|| |||||| || |||| |||||||||| |
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| T |
40241721 |
aagcatattagcagacaattaattcacat |
40241693 |
T |
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