View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232-Insertion-1 (Length: 851)

Name: NF2232-Insertion-1
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232-Insertion-1
NF2232-Insertion-1
[»] chr2 (42 HSPs)
chr2 (7-851)||(40943499-40944343)
chr2 (303-399)||(33197327-33197425)
chr2 (802-851)||(40918583-40918632)
chr2 (306-400)||(31461325-31461421)
chr2 (485-572)||(40158782-40158869)
chr2 (486-560)||(40776028-40776102)
chr2 (494-572)||(42852621-42852699)
chr2 (489-570)||(41170678-41170759)
chr2 (303-400)||(11393453-11393552)
chr2 (303-400)||(11410114-11410213)
chr2 (486-570)||(40837358-40837438)
chr2 (485-560)||(43529789-43529864)
chr2 (487-561)||(25609862-25609936)
chr2 (485-559)||(29430822-29430896)
chr2 (485-570)||(787396-787481)
chr2 (485-538)||(5902502-5902555)
chr2 (489-570)||(8017502-8017583)
chr2 (487-560)||(14277824-14277897)
chr2 (485-570)||(18179161-18179246)
chr2 (303-400)||(32098395-32098497)
chr2 (487-568)||(33981189-33981270)
chr2 (485-557)||(1318300-1318371)
chr2 (303-401)||(3102577-3102677)
chr2 (492-560)||(5759506-5759574)
chr2 (317-395)||(11393747-11393827)
chr2 (317-395)||(11410408-11410488)
chr2 (485-557)||(16947090-16947161)
chr2 (485-557)||(17017755-17017826)
chr2 (494-558)||(17443541-17443605)
chr2 (361-401)||(17952787-17952827)
chr2 (514-570)||(22878191-22878247)
chr2 (491-570)||(36677722-36677802)
chr2 (356-400)||(40758962-40759006)
chr2 (515-570)||(37419588-37419643)
chr2 (342-400)||(38355142-38355201)
chr2 (491-570)||(40400821-40400900)
chr2 (524-570)||(40759263-40759309)
chr2 (485-538)||(1801732-1801785)
chr2 (525-570)||(1830143-1830188)
chr2 (485-538)||(12313126-12313179)
chr2 (486-559)||(14299563-14299636)
chr2 (351-399)||(25609729-25609778)
[»] chr3 (44 HSPs)
chr3 (485-575)||(21872211-21872301)
chr3 (418-538)||(37273135-37273251)
chr3 (486-572)||(22667468-22667554)
chr3 (486-572)||(22724107-22724193)
chr3 (488-570)||(44014719-44014801)
chr3 (307-401)||(54775016-54775112)
chr3 (515-578)||(24158429-24158492)
chr3 (485-568)||(24624274-24624357)
chr3 (516-566)||(27795938-27795988)
chr3 (517-559)||(44237513-44237555)
chr3 (351-401)||(49587002-49587052)
chr3 (485-570)||(41164911-41164996)
chr3 (485-566)||(43115120-43115201)
chr3 (515-574)||(27294440-27294499)
chr3 (305-401)||(38462167-38462265)
chr3 (485-570)||(45541635-45541720)
chr3 (351-402)||(20192691-20192743)
chr3 (496-568)||(33880480-33880552)
chr3 (351-398)||(42039092-42039140)
chr3 (361-401)||(44284144-44284184)
chr3 (307-401)||(51278243-51278339)
chr3 (361-401)||(53457321-53457361)
chr3 (361-400)||(1395615-1395654)
chr3 (485-564)||(3467315-3467394)
chr3 (485-568)||(27290824-27290907)
chr3 (490-561)||(28283529-28283600)
chr3 (512-559)||(30657377-30657424)
chr3 (486-529)||(30668930-30668973)
chr3 (361-400)||(34318032-34318071)
chr3 (303-400)||(39971203-39971302)
chr3 (361-399)||(905058-905096)
chr3 (486-560)||(11253566-11253640)
chr3 (416-481)||(23785254-23785320)
chr3 (485-559)||(26330255-26330329)
chr3 (526-572)||(31337331-31337377)
chr3 (486-524)||(34254775-34254813)
chr3 (343-399)||(41028939-41028997)
chr3 (513-559)||(41033188-41033234)
chr3 (360-401)||(24887369-24887410)
chr3 (528-561)||(25699128-25699161)
chr3 (521-558)||(36445924-36445961)
chr3 (489-570)||(47904001-47904082)
chr3 (485-570)||(49605772-49605857)
chr3 (485-522)||(54837003-54837040)
[»] chr7 (30 HSPs)
chr7 (485-570)||(33894691-33894776)
chr7 (486-572)||(3836602-3836688)
chr7 (492-569)||(32410611-32410688)
chr7 (517-560)||(19624273-19624316)
chr7 (492-566)||(1710801-1710874)
chr7 (307-400)||(3501053-3501147)
chr7 (485-561)||(20547320-20547396)
chr7 (485-560)||(8094370-8094445)
chr7 (485-560)||(25670517-25670592)
chr7 (361-400)||(49060484-49060523)
chr7 (303-390)||(22388001-22388090)
chr7 (489-538)||(40009544-40009593)
chr7 (485-569)||(1645622-1645706)
chr7 (443-487)||(3468641-3468685)
chr7 (346-401)||(35808990-35809046)
chr7 (485-572)||(28727682-28727769)
chr7 (361-400)||(42656459-42656498)
chr7 (497-559)||(21247576-21247638)
chr7 (488-570)||(28691757-28691838)
chr7 (516-570)||(29363603-29363657)
chr7 (485-569)||(425745-425830)
chr7 (485-570)||(3610661-3610746)
chr7 (361-402)||(5715123-5715164)
chr7 (301-392)||(6552365-6552458)
chr7 (303-402)||(12242128-12242229)
chr7 (361-398)||(28178913-28178950)
chr7 (491-560)||(31002812-31002881)
chr7 (486-559)||(41040230-41040303)
chr7 (342-401)||(45593805-45593866)
chr7 (371-400)||(46281218-46281247)
[»] chr1 (40 HSPs)
chr1 (485-570)||(32515362-32515447)
chr1 (485-574)||(18327063-18327152)
chr1 (485-571)||(15581318-15581404)
chr1 (301-401)||(30259573-30259675)
chr1 (485-570)||(3597202-3597287)
chr1 (361-400)||(6265038-6265077)
chr1 (303-383)||(35350505-35350587)
chr1 (328-401)||(45107532-45107606)
chr1 (485-572)||(3215785-3215873)
chr1 (485-559)||(4868464-4868537)
chr1 (485-567)||(43420322-43420404)
chr1 (485-570)||(4549462-4549547)
chr1 (485-570)||(6292557-6292641)
chr1 (485-570)||(28467230-28467315)
chr1 (488-569)||(38001663-38001743)
chr1 (485-577)||(601104-601196)
chr1 (485-561)||(8780354-8780430)
chr1 (485-569)||(10199330-10199414)
chr1 (524-572)||(34668759-34668807)
chr1 (361-401)||(35080156-35080196)
chr1 (485-560)||(4757402-4757477)
chr1 (489-572)||(5157140-5157223)
chr1 (486-529)||(7941672-7941715)
chr1 (534-573)||(14559085-14559124)
chr1 (485-566)||(28837278-28837358)
chr1 (485-548)||(34536222-34536285)
chr1 (303-400)||(36602674-36602773)
chr1 (514-572)||(7252539-7252597)
chr1 (512-570)||(21002246-21002304)
chr1 (361-399)||(24702205-24702243)
chr1 (486-560)||(25944506-25944580)
chr1 (362-400)||(26293193-26293231)
chr1 (489-559)||(34422106-34422176)
chr1 (351-400)||(46499941-46499991)
chr1 (361-399)||(50319236-50319274)
chr1 (524-569)||(2832075-2832120)
chr1 (351-400)||(5422007-5422056)
chr1 (364-401)||(15437910-15437947)
chr1 (489-570)||(41638229-41638310)
chr1 (490-571)||(49282634-49282713)
[»] scaffold0590 (1 HSPs)
scaffold0590 (304-401)||(1160-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (304-401)||(2716-2815)
[»] chr8 (34 HSPs)
chr8 (306-402)||(34563137-34563235)
chr8 (485-570)||(2487929-2488014)
chr8 (488-570)||(16162827-16162909)
chr8 (486-563)||(9541093-9541170)
chr8 (485-562)||(30191070-30191147)
chr8 (303-396)||(7026615-7026710)
chr8 (485-572)||(39551128-39551215)
chr8 (489-570)||(7714310-7714391)
chr8 (338-401)||(14949807-14949872)
chr8 (490-559)||(26499785-26499854)
chr8 (485-570)||(33553304-33553389)
chr8 (517-570)||(44236744-44236797)
chr8 (485-572)||(26410344-26410431)
chr8 (485-560)||(34770932-34771007)
chr8 (490-541)||(43908650-43908701)
chr8 (355-400)||(11000648-11000693)
chr8 (485-570)||(43368621-43368706)
chr8 (496-560)||(2364391-2364455)
chr8 (486-570)||(6496812-6496896)
chr8 (489-557)||(24326099-24326167)
chr8 (307-381)||(26716542-26716618)
chr8 (486-538)||(29169889-29169941)
chr8 (514-561)||(3953895-3953942)
chr8 (485-560)||(7646270-7646345)
chr8 (343-400)||(14482126-14482185)
chr8 (497-572)||(37822578-37822653)
chr8 (485-560)||(39881652-39881727)
chr8 (485-528)||(42370324-42370367)
chr8 (502-560)||(1889066-1889124)
chr8 (524-570)||(4560605-4560651)
chr8 (355-401)||(26820137-26820183)
chr8 (303-394)||(12972740-12972833)
chr8 (515-556)||(25881350-25881391)
chr8 (329-400)||(29699164-29699237)
[»] chr6 (28 HSPs)
chr6 (486-559)||(27857423-27857496)
chr6 (485-549)||(33385593-33385657)
chr6 (489-571)||(26559159-26559241)
chr6 (307-401)||(5328862-5328958)
chr6 (418-559)||(33887831-33887968)
chr6 (489-546)||(2732192-2732249)
chr6 (303-398)||(5884947-5885044)
chr6 (490-570)||(738462-738542)
chr6 (361-401)||(4420561-4420601)
chr6 (500-570)||(7901752-7901822)
chr6 (513-570)||(2457033-2457090)
chr6 (529-570)||(4308885-4308926)
chr6 (524-560)||(7351602-7351638)
chr6 (351-401)||(2514635-2514686)
chr6 (351-401)||(24774691-24774742)
chr6 (487-570)||(32171304-32171387)
chr6 (485-539)||(283159-283213)
chr6 (351-400)||(4248891-4248941)
chr6 (352-401)||(10452446-10452496)
chr6 (485-559)||(11600806-11600880)
chr6 (526-572)||(24973946-24973992)
chr6 (499-565)||(31774455-31774521)
chr6 (525-570)||(1810226-1810271)
chr6 (485-570)||(7785665-7785750)
chr6 (360-401)||(30784500-30784541)
chr6 (485-558)||(33259882-33259955)
chr6 (515-560)||(33737664-33737709)
chr6 (485-558)||(34939808-34939881)
[»] chr5 (34 HSPs)
chr5 (486-570)||(10640019-10640102)
chr5 (416-570)||(4619706-4619856)
chr5 (491-566)||(13244476-13244551)
chr5 (515-560)||(1084070-1084115)
chr5 (303-398)||(29115302-29115399)
chr5 (319-401)||(7096213-7096297)
chr5 (510-570)||(36796628-36796688)
chr5 (488-567)||(5377121-5377200)
chr5 (499-570)||(12930650-12930721)
chr5 (515-570)||(42034154-42034209)
chr5 (301-401)||(37063160-37063262)
chr5 (485-570)||(499652-499737)
chr5 (515-572)||(10771807-10771864)
chr5 (499-560)||(22195610-22195671)
chr5 (303-394)||(26516182-26516275)
chr5 (485-570)||(42646955-42647039)
chr5 (497-557)||(7907958-7908018)
chr5 (518-570)||(25720338-25720390)
chr5 (353-400)||(39128574-39128622)
chr5 (303-401)||(39257472-39257572)
chr5 (485-561)||(40534263-40534339)
chr5 (485-560)||(11457162-11457237)
chr5 (499-570)||(14714764-14714835)
chr5 (485-560)||(38033958-38034033)
chr5 (486-560)||(2568723-2568797)
chr5 (338-394)||(13224348-13224406)
chr5 (343-399)||(20982223-20982281)
chr5 (488-570)||(40335794-40335876)
chr5 (487-572)||(11615573-11615658)
chr5 (360-401)||(14295449-14295490)
chr5 (485-570)||(14331431-14331515)
chr5 (485-538)||(16380524-16380577)
chr5 (489-570)||(26516475-26516556)
chr5 (515-556)||(37968971-37969012)
[»] chr4 (42 HSPs)
chr4 (485-572)||(2996637-2996724)
chr4 (452-578)||(19304962-19305083)
chr4 (486-568)||(21157833-21157915)
chr4 (488-570)||(25717660-25717742)
chr4 (490-572)||(37636105-37636187)
chr4 (485-559)||(50298580-50298653)
chr4 (488-570)||(55870263-55870345)
chr4 (485-570)||(7367975-7368060)
chr4 (485-558)||(8328052-8328125)
chr4 (489-558)||(18628486-18628555)
chr4 (351-399)||(36048733-36048781)
chr4 (485-572)||(1137776-1137863)
chr4 (309-398)||(51555956-51556047)
chr4 (487-573)||(3639086-3639172)
chr4 (517-559)||(47970392-47970434)
chr4 (361-398)||(25487634-25487671)
chr4 (515-560)||(32071957-32072002)
chr4 (485-573)||(22236023-22236111)
chr4 (485-529)||(23819153-23819197)
chr4 (485-573)||(25896848-25896936)
chr4 (361-401)||(51044545-51044585)
chr4 (361-400)||(3175895-3175934)
chr4 (485-559)||(10172126-10172200)
chr4 (498-573)||(25487475-25487550)
chr4 (503-558)||(25606224-25606279)
chr4 (487-570)||(29375969-29376052)
chr4 (351-401)||(47970251-47970302)
chr4 (489-559)||(4071946-4072016)
chr4 (342-401)||(4191662-4191724)
chr4 (303-345)||(9316488-9316530)
chr4 (303-396)||(43533530-43533624)
chr4 (515-569)||(46860012-46860066)
chr4 (485-567)||(52172789-52172871)
chr4 (361-399)||(54277402-54277440)
chr4 (488-570)||(55437144-55437225)
chr4 (512-569)||(1017119-1017176)
chr4 (352-401)||(3662283-3662332)
chr4 (533-570)||(25571371-25571408)
chr4 (516-561)||(28615619-28615664)
chr4 (310-401)||(36734784-36734877)
chr4 (487-560)||(50746041-50746114)
chr4 (525-570)||(52169941-52169986)
[»] scaffold0100 (1 HSPs)
scaffold0100 (306-392)||(42504-42592)
[»] scaffold0428 (1 HSPs)
scaffold0428 (485-558)||(3970-4043)
[»] scaffold0426 (1 HSPs)
scaffold0426 (486-557)||(4281-4352)
[»] scaffold0024 (1 HSPs)
scaffold0024 (303-400)||(27460-27559)
[»] scaffold0004 (1 HSPs)
scaffold0004 (525-572)||(98569-98616)
[»] scaffold0110 (1 HSPs)
scaffold0110 (490-563)||(4151-4224)


Alignment Details
Target: chr2 (Bit Score: 785; Significance: 0; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 7 - 851
Target Start/End: Original strand, 40943499 - 40944343
Alignment:
Q  7 atgtccgtcgcagctacaattcagtaacttcaccctgtcgacagttgcctacccataagaatagagttgagctcttacgtgatggcagaactctacaaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40943499 atgtccgtcgcagctacaattcagtaacttcaccctgtcgacagttgcctacccataagaatagagttgagctcttacgtgatggcagaactctacaaca 40943598  T
Q  107 gtccctccttggtgactgcaaaacaagtcgaatattcacttcatgatatcatccatttcaatcaagaaaatcttaaaacattagctaaaaattgcaaaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40943599 gtccctccttggtgactgcaaaacaagtcgaatattcacttcataatatcatccatttcaatcaagaaaatcttaaaacattagctaaaaattgcaaaag 40943698  T
Q  207 tgaagtttcttaatggcagaatgaatgtaaattgtgtttggttatgtggcttagtatatttggataaacatttatcataaatagcaagagagaagattgg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40943699 tgaagtttcttaatggcagaatgaatgtaaattgtgtttggttatgtggcttagtatatttggataaacatttatcataaatagcaagagagaagatttg 40943798  T
Q  307 ataaacagcttaattaaacacatatatcataaacatttatcataaagtgcttattataagctacttctataacaaaaaataaaataaagtcaaacattca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  40943799 ataaacagcttaattaaacacatatatcataaacatttatcataaagtgcttattataagctacttctataacaaaaaataaaataaagtcaaacattgg 40943898  T
Q  407 actacgatcctataaactgttttcataagcatcatggagaacttgtggaaacaagttggaaacaacttgtggacatatcatgtcataagctgttttcata 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40943899 actacgatcctataaactgttttcataagcatcatggagaacttgtggaaacaagttggaagcaacttgtggacatatcatgtcataagctgttttcata 40943998  T
Q  507 aacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatatacctaatgcattttagttgaaatataattgtat 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  40943999 aacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaacatacctaatgcattttagttgaaatctaattgtat 40944098  T
Q  607 ggatagtattaaagtttgatctctgaatnnnnnnnnttatgagcaaccttacctttttccagcgcaaaggatcgcgtctttttgtgacaacgatggaagt 706  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40944099 ggatagtattaaagtttgatctctgaataaaaaaaattatgagcaaccttacctttttccagcgcaaaggatcgcgtctttttgtgacaacgatggaagt 40944198  T
Q  707 aattttctcaagtgattccattctccaccggcaaaagggactcttagtttggtcacgagaataaacaccaacaatttgtctagaagcagtatcaaaatga 806  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40944199 aattttctcaggtgattccattctccaccggcaaaaaggactcttagtttggtcacgagaataaacaccaacaatttgtctagaagcagtatcaaaatga 40944298  T
Q  807 gttttgctcatgtagtaaacaaagggcttttgacaaggatgttta 851  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40944299 gttttgctcatgtagtaaacaaagggcttttgacaaggatgttta 40944343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 33197425 - 33197327
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    ||||||||||| || |||||||||| |||| |||||||  |||||||| |||||||||| ||||||||| ||||||||||||| ||| |||||||||||    
T  33197425 ttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 802 - 851
Target Start/End: Original strand, 40918583 - 40918632
Alignment:
Q  802 aatgagttttgctcatgtagtaaacaaagggcttttgacaaggatgttta 851  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40918583 aatgagttttactcatgtagtaaacaaagggcttttgacaaggatgttta 40918632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 31461325 - 31461421
Alignment:
Q  306 gataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||| ||||||||| ||| | || ||||||| | ||||||| ||||| |||| ||||||||| ||||||||||||| ||||||||||||||||    
T  31461325 gataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 40158782 - 40158869
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||||||||||||||  |   |||| |||| |||||||| ||||||||| ||||||  ||||||||||| ||||||||||    
T  40158782 catgtcataagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataagccaatccaaata 40158869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 560
Target Start/End: Complemental strand, 40776102 - 40776028
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||||||||||||  | |||||||||| || | |||||||||||| | ||||||||||||| ||||    
T  40776102 atgtcataagctgttttcataagttcttccaaacaggtttataagtgcttatgttagtagataaactcaagtaag 40776028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 572
Target Start/End: Complemental strand, 42852699 - 42852621
Alignment:
Q  494 agctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||||  || ||||||||||| ||||||||||||||| ||  ||||||  |||||||||| ||||||||||    
T  42852699 agctgttttcataggctcttccaaacagtctcacaagtgcttatgccagcagataagttcaaataagcaaatccaaata 42852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 570
Target Start/End: Original strand, 41170678 - 41170759
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||| || |||||||||  | ||||||| ||| ||||||||| |||||| | ||||||||||||||||||| ||||||||    
T  41170678 tcataaactattttcataagttattccaaatagtctcacaagtgtttatgttagtagataaactcaaataagccaatccaaa 41170759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 303 - 400
Target Start/End: Complemental strand, 11393552 - 11393453
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||||||||| ||| |||| || ||   ||||||||| |||||||||| ||||||||| ||||||| ||||| ||| |||||| |||||    
T  11393552 ttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaaa 11393453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 303 - 400
Target Start/End: Complemental strand, 11410213 - 11410114
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||||||||| ||| |||| || ||   ||||||||| |||||||||| ||||||||| ||||||| ||||| ||| |||||| |||||    
T  11410213 ttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaaa 11410114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 486 - 570
Target Start/End: Complemental strand, 40837438 - 40837358
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||| |||||||||||||| | ||||||||| ||    ||| |||||||| ||||||| ||||||||||| ||||||||    
T  40837438 atgtcataagatgttttcataaactctcccaaacagtctc----gtgtttatgtcagtagataagctcaaataagccaatccaaa 40837358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 560
Target Start/End: Complemental strand, 43529864 - 43529789
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||| ||||||||||||||||||| | | ||||||||| ||| ||||||||||  || ||||||| ||||||||||    
T  43529864 catggcataagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataag 43529789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 561
Target Start/End: Original strand, 25609862 - 25609936
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    ||||||||| ||||| ||||| || |||||| |||| |||||||| ||||||| | ||||||| |||||||||||    
T  25609862 tgtcataagttgtttccataagctattccaagcagtctcacaagttcttatgttagtagataagctcaaataagc 25609936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 29430822 - 29430896
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||||| |||||||||  | ||||||| |||  |||||||| |||||||| ||||||| |||||||||    
T  29430822 catgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaataa 29430896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 787396 - 787481
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||||||||  | |  |||||||| ||||||||||||||| || ||||||  ||| ||||| | ||||||||    
T  787396 catgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatccaatccaaa 787481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 5902555 - 5902502
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 538  Q
    |||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  5902555 catgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 570
Target Start/End: Original strand, 8017502 - 8017583
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||||  | | ||||| | |  ||||||||||||||||| ||||||| ||||||||||  ||||||||    
T  8017502 tcataagctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataacctcaaataagtcaatccaaa 8017583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 560
Target Start/End: Complemental strand, 14277897 - 14277824
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||| ||||| ||| | || ||||||||| | |||||||| ||||||||  ||||||||||||||||||    
T  14277897 tgtcataagttgtttccatgagctcttccaaacactctcacaagtacttatgtccgtagataaactcaaataag 14277824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 18179246 - 18179161
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||| |||| |||||||||||||  |||||||||   | |||||||||||||| | ||||||| || |||||||| ||||||||    
T  18179246 catgtcttaagatgttttcataaacacttccaaacaaacttacaagtgcttatgtaactagataagcttaaataagccaatccaaa 18179161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 400
Target Start/End: Complemental strand, 32098497 - 32098395
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata----aagtgcttat-tataagctacttctataacaaaaaataaaataaagtc 397  Q
    ||||||||||| |||| ||||   | |||| |||||||| ||||||||    || ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  32098497 ttggataaacaacttacttaagtgcttatagcataaacagttatcatatactaaatgcttatatataagctatttctataacaaaagataaaataaagtc 32098398  T
Q  398 aaa 400  Q
    |||    
T  32098397 aaa 32098395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 33981189 - 33981270
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcca 568  Q
    |||||||||| ||||||||||  |||| || ||||| ||||||||||||| |  | ||| ||| ||||||||||||||||||    
T  33981189 tgtcataagccgttttcataagttttttcagacagtctcacaagtgcttaagctagtaggtaagctcaaataagctaatcca 33981270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 1318300 - 1318371
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaat 557  Q
    ||||||||||| ||||||||||| || |  |||||||| ||||||||||||||| || ||||||| |||||||    
T  1318300 catgtcataagatgttttcataagctctcacaaacagtctcacaagtgcttatg-cagtagataatctcaaat 1318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 3102577 - 3102677
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||| ||||| | | || | ||||||  ||||||||| || ||||||| ||||||||| || |||| ||||| ||||||||||||||||    
T  3102577 ttggataaacagctttattaagcgcttaaaacataaatgtttatcatataactgcttatgtataagctatttttatagcaaaatataaaataaagtcaaa 3102676  T
Q  401 c 401  Q
    |    
T  3102677 c 3102677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 5759574 - 5759506
Alignment:
Q  492 taagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||| ||||| || | ||||||||| |||||||| |||||  || ||||||||||||||||||    
T  5759574 taagctgtttccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaataag 5759506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 11393827 - 11393747
Alignment:
Q  317 taattaaacacatatatcataaacatttatca-taaagtgcttat-tataagctacttctataacaaaaaataaaataaag 395  Q
    ||||||| ||| |||| ||||||||||||||| | |||||||||| ||||||||| ||||||| ||||| ||| |||||||    
T  11393827 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaag 11393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 11410488 - 11410408
Alignment:
Q  317 taattaaacacatatatcataaacatttatca-taaagtgcttat-tataagctacttctataacaaaaaataaaataaag 395  Q
    ||||||| ||| |||| ||||||||||||||| | |||||||||| ||||||||| ||||||| ||||| ||| |||||||    
T  11410488 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctataccaaaagatacaataaag 11410408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 16947090 - 16947161
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaat 557  Q
    ||||||||||| ||||  ||||| || ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  16947090 catgtcataagttgttc-cataagctgttccaaacagcctcactagtgcttatgtcattagataaactaaaat 16947161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 557
Target Start/End: Original strand, 17017755 - 17017826
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaat 557  Q
    ||||||||||| ||||  ||||| || ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  17017755 catgtcataagttgttc-cataagctgttccaaacagcctcactagtgcttatgtcattagataaactaaaat 17017826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 558
Target Start/End: Complemental strand, 17443605 - 17443541
Alignment:
Q  494 agctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    |||||||| |||||||| ||||||||||| |||||||||||||| ||| || ||||  |||||||    
T  17443605 agctgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaata 17443541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 17952827 - 17952787
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  17952827 tataagctatttctataacaaaagataaaataaagtcaaac 17952787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 514 - 570
Target Start/End: Original strand, 22878191 - 22878247
Alignment:
Q  514 ccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||| |||||||||||||||||| | ||||| ||||||||||  ||||||||    
T  22878191 ccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 570
Target Start/End: Original strand, 36677722 - 36677802
Alignment:
Q  491 ataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcat-tagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||| || |    || ||| ||||||||||||||||||  |||||||||||||||||| |||||||||    
T  36677722 ataagctgttttcataagctctcttgaatagtctcacaagtgcttatgtcaaatagataaactcaaataagttaatccaaa 36677802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 40758962 - 40759006
Alignment:
Q  356 cttattataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||    
T  40758962 cttattataagctatttccataacaaaagataaaataaagtcaaa 40759006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 570
Target Start/End: Complemental strand, 37419643 - 37419588
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||| |||||||||||||||||| | | ||||||||||||||||||  ||||||||    
T  37419643 caaagagtttcacaagtgcttatataagtagataaactcaaataagtcaatccaaa 37419588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 38355142 - 38355201
Alignment:
Q  342 tttatcata-aagtgcttattataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||| |||| |||||||||||||| |||||||||  ||||||||||| |||||||    
T  38355142 tttatcatataagtacttattataagctatttctataacgtaaaataaaatagagtcaaa 38355201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 570
Target Start/End: Complemental strand, 40400900 - 40400821
Alignment:
Q  491 ataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||  |||| |||||| | ||||||||  |||||||| ||||||  || |||||||| ||||||||    
T  40400900 ataagctgttttcataagttttttcaaacaatgtcacaagtctttatgtcagtagataggcttaaataagccaatccaaa 40400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 40759263 - 40759309
Alignment:
Q  524 tcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||| ||||||| ||||||||||  ||||||||    
T  40759263 tcacaagtgcttatgtcaatagataagctcaaataaggcaatccaaa 40759309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 1801732 - 1801785
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 538  Q
    |||||||||||||||||||||||  | | ||||||| | |||||||||||||||    
T  1801732 catgtcataagctgttttcataagttctcccaaacaatatcacaagtgcttatg 1801785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 570
Target Start/End: Original strand, 1830143 - 1830188
Alignment:
Q  525 cacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||    
T  1830143 cacaagtgcttatgtcagtaaataaactcaaataagtcaatccaaa 1830188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 12313179 - 12313126
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 538  Q
    |||| ||||||||||||||||||| | | ||||||| | |||||||||||||||    
T  12313179 catggcataagctgttttcataaattctcccaaacaatctcacaagtgcttatg 12313126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 559
Target Start/End: Complemental strand, 14299636 - 14299563
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||||||||| ||||| |||||||| |||||||||||  | |||||||||| ||   ||| |||||||||||||    
T  14299636 atgtcataagttgtttccataaactcttccaaacagtccctcaagtgcttacgttggtagctaaactcaaataa 14299563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 25609729 - 25609778
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    |||||||||| ||||||||| |||||||| |||| |||||||||||||||    
T  25609729 aagtgcttatgtataagctatttctataagaaaagataaaataaagtcaa 25609778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 485 - 575
Target Start/End: Complemental strand, 21872301 - 21872211
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatatac 575  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||||||||||||| |||||||  ||||||||| ||||||||| ||||    
T  21872301 catgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaacatac 21872211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 418 - 538
Target Start/End: Original strand, 37273135 - 37273251
Alignment:
Q  418 ataaactgttttcataagc-atcatggagaacttgtggaaacaagttggaaacaacttgtggacatatcatgtcataagctgttttcataaacttttcca 516  Q
    ||||||||||||||||||| ||| |||||||||| |||||| |||||| ||||||||| |||||||     |||||||| ||||| ||||| || | |||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacat-----gtcataagttgtttccataagctctccca 37273229  T
Q  517 aacagtttcacaagtgcttatg 538  Q
    |||||| |||| ||||||||||    
T  37273230 aacagtctcaccagtgcttatg 37273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 486 - 572
Target Start/End: Original strand, 22667468 - 22667554
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||| ||| ||||||| |||||||| |  |||||||| |||||||||||||||||| ||||||| ||||||||||| |||| |||||    
T  22667468 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaata 22667554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 486 - 572
Target Start/End: Original strand, 22724107 - 22724193
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||| ||| ||||||| |||||||| |  |||||||| |||||||||||||||||| ||||||| ||||||||||| |||| |||||    
T  22724107 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaata 22724193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 488 - 570
Target Start/End: Complemental strand, 44014801 - 44014719
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||||  | ||||||||||||||||||| ||||||||    
T  44014801 gtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 44014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 54775016 - 54775112
Alignment:
Q  307 ataaacagcttaattaaacacatatatcataaacatttatcataaa-gtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||||||||||| |||||||| ||||||   |||||||||| |||||||  | |||| || ||||||||||||| |||||||||||||||||    
T  54775016 ataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagtcaaac 54775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 578
Target Start/End: Complemental strand, 24158492 - 24158429
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatataccta 578  Q
    ||||||||||||||||| ||||||||| ||||||| || |||||||| ||||||||||| ||||    
T  24158492 caaacagtttcacaagtacttatgtcagtagataagcttaaataagccaatccaaatatgccta 24158429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 568
Target Start/End: Original strand, 24624274 - 24624357
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcca 568  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||||| |||| | |||||||  |||| ||||| ||||||    
T  24624274 catgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaagccaatcca 24624357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 566
Target Start/End: Complemental strand, 27795988 - 27795938
Alignment:
Q  516 aaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatc 566  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  27795988 aaacagtttcacaagtgcttatgccagtagataagctcaaataagctaatc 27795938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 44237513 - 44237555
Alignment:
Q  517 aacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  44237513 aacagtttcacaagtgcttatgtcagtagataaactcaaataa 44237555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 49587052 - 49587002
Alignment:
Q  351 aagtgcttattataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  49587052 aagtgcttactataagctatttctataacaaaagataaaataaagtcaaac 49587002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 41164996 - 41164911
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||| ||||||| ||||  ||||||||||| | |||||||| |||||| |  |||||||  |||||||||||||||||||    
T  41164996 catgtcataaactgttttaataagtttttccaaacattgtcacaagttcttatgccggtagataagttcaaataagctaatccaaa 41164911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 566
Target Start/End: Original strand, 43115120 - 43115201
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatc 566  Q
    ||||||||||| ||||| |||||||| ||||||||| | ||||||||| |||||||| ||||||| || | |||||| ||||    
T  43115120 catgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataaccttatataagcaaatc 43115201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 27294440 - 27294499
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatata 574  Q
    |||||||| ||||||||||||||| || ||||||||||||| ||||| ||| ||||||||    
T  27294440 caaacagtctcacaagtgcttatgacaatagataaactcaagtaagccaattcaaatata 27294499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 38462167 - 38462265
Alignment:
Q  305 ggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttatt-ataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||  |||||||| | | || | |||||||| |||||||| ||||| ||||| |||||||| ||||||| ||||| |||||||||||||||||    
T  38462167 ggataaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaac 38462265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 45541635 - 45541720
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||||||||  | ||| ||||||| | ||||||| ||||  ||||| |||| ||||||||||  ||||||||    
T  45541635 catgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatccaaa 45541720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 20192743 - 20192691
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaaca 402  Q
    |||||||||| ||||||||| || |||||||||| ||||||||||||||||||    
T  20192743 aagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaaca 20192691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 33880552 - 33880480
Alignment:
Q  496 ctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcca 568  Q
    ||||||||||||  | | |||||||||||| ||| || |||||||| ||||||| ||||||||||| ||||||    
T  33880552 ctgttttcataagttctcccaaacagtttctcaaatgattatgtcaatagataagctcaaataagccaatcca 33880480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 42039092 - 42039140
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtca 398  Q
    |||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  42039092 aagtgcttatgtataagctatttctgtaacaaaaaataaaataaagtca 42039140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 44284184 - 44284144
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  44284184 tataagctatttctataacaaaaaataaaacaaagtcaaac 44284144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 401
Target Start/End: Complemental strand, 51278339 - 51278243
Alignment:
Q  307 ataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||| ||||||||||   ||||  |||| ||||||||||| || |||| || ||||||||| ||||||||||||| || ||||||||||||||    
T  51278339 ataaacagtttaattaaacgtttataatataagcatttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaac 51278243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 53457321 - 53457361
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  53457321 tataagctacttcgataacaaaagataaaataaagtcaaac 53457361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 1395615 - 1395654
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  1395615 tataagctatttctataacaaaagataaaataaagtcaaa 1395654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 564
Target Start/End: Complemental strand, 3467394 - 3467315
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaa 564  Q
    ||||||||||||||||||||||  || | ||||| | | |||| |||||||| |  |||||||||||||||||| |||||    
T  3467394 catgtcataagctgttttcatatgctgtaccaaataatctcaccagtgcttaagcaattagataaactcaaatatgctaa 3467315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 568
Target Start/End: Complemental strand, 27290907 - 27290824
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcca 568  Q
    ||||||||||||||||||||||| || ||| ||||||  |||||| || | ||||||  || |||||||||||||  |||||||    
T  27290907 catgtcataagctgttttcataagctcttcgaaacagcctcacaattgttgatgtcaacagttaaactcaaataaattaatcca 27290824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 561
Target Start/End: Complemental strand, 28283600 - 28283529
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    |||||||| |||||||||  | || |||||||| ||||||||||| ||||||| | |||| |||||||||||    
T  28283600 cataagctattttcataagttctttcaaacagtctcacaagtgctaatgtcatgacataagctcaaataagc 28283529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 559
Target Start/End: Original strand, 30657377 - 30657424
Alignment:
Q  512 ttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||| | ||| |||||||||||||| |||||||||||||||||    
T  30657377 ttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataa 30657424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Complemental strand, 30668973 - 30668930
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaa 529  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  30668973 atgtcataagttgttttcataaatttttccaaacaatttcacaa 30668930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 34318032 - 34318071
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  34318032 tataagctatttctataacaaaatataaaataaagtcaaa 34318071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 400
Target Start/End: Original strand, 39971203 - 39971302
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||| ||||  |||||||| | | |||| ||| |||| |||||||| |||||||||| |||||| ||||| |||||||||| ||||||||||| ||||    
T  39971203 ttggattaacaatttaattaagctcttataacatcaacacttatcatataagtgcttatgtataagttacttatataacaaaagataaaataaagccaaa 39971302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 905096 - 905058
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  905096 tataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 11253566 - 11253640
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||| |||||| ||||| | | ||||||||| || ||||||||||||  | ||||||| ||||||||||    
T  11253566 atgtcataagttgtttttataaattctgccaaacagtctctcaagtgcttatgctagtagataatctcaaataag 11253640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 481
Target Start/End: Original strand, 23785254 - 23785320
Alignment:
Q  416 ctataaactgttttcataagc-atcatggagaacttgtggaaacaagttggaaacaacttgtggaca 481  Q
    |||||||||||||||| ||||  ||||||||| ||| |||||||||| || ||||||||| ||||||    
T  23785254 ctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaacaacttatggaca 23785320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 559
Target Start/End: Complemental strand, 26330329 - 26330255
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||| ||| ||||||||||| || ||| ||||||| |||||| | ||||| ||| ||||||| |||||||||    
T  26330329 catgtcagaagttgttttcataagctcttctaaacagtctcacaaatacttatttcagtagataacctcaaataa 26330255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 31337377 - 31337331
Alignment:
Q  526 acaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||||||| |||||||||||||| || | ||||||||||    
T  31337377 acaagtgcttatgtcagtagataaactcaaacaaaccaatccaaata 31337331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 524
Target Start/End: Complemental strand, 34254813 - 34254775
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagttt 524  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  34254813 atgtcataaactgttttcataagcttttccaaacagttt 34254775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 41028997 - 41028939
Alignment:
Q  343 ttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    |||||||| |||||||||| ||||||||| ||||||||||||| | |||||||||||||    
T  41028997 ttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaa 41028939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 513 - 559
Target Start/End: Complemental strand, 41033234 - 41033188
Alignment:
Q  513 tccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||||||||| |||| ||| ||||||||| |||||||||||||||||    
T  41033234 tccaaacagtctcacgagtccttatgtcagtagataaactcaaataa 41033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 24887410 - 24887369
Alignment:
Q  360 ttataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| ||||||||||| | |||||||||||||||||    
T  24887410 ttataagctatttctataacaatagataaaataaagtcaaac 24887369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 561
Target Start/End: Complemental strand, 25699161 - 25699128
Alignment:
Q  528 aagtgcttatgtcattagataaactcaaataagc 561  Q
    |||||||||||||| |||||||||||||||||||    
T  25699161 aagtgcttatgtcaatagataaactcaaataagc 25699128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 558
Target Start/End: Original strand, 36445924 - 36445961
Alignment:
Q  521 gtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  36445924 gtttcacaagtgctcatgtcaatagataaactcaaata 36445961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 570
Target Start/End: Complemental strand, 47904082 - 47904001
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||||  | | ||||||||| ||||| | |||||| |||   ||||||||||||||||  ||||||||    
T  47904082 tcataagctgttttcataagttctcccaaacagtgtcacaggagcttatatcagaggataaactcaaataagtcaatccaaa 47904001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 49605857 - 49605772
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||| ||||| ||| |||| |  |||||| | |||||||| ||||||  |  |||||||||||||||| ||||||||||    
T  49605857 catgtcataagttgtttccatgaactctctcaaacactctcacaagtacttatgctagaagataaactcaaataaactaatccaaa 49605772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 54837040 - 54837003
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagt 522  Q
    |||||||||||||||||||||||| | |||||||||||    
T  54837040 catgtcataagctgttttcataaattcttccaaacagt 54837003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 33894691 - 33894776
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||| ||||||||||||| || |  |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  33894691 catgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataagctaatccaaa 33894776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 486 - 572
Target Start/End: Complemental strand, 3836688 - 3836602
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||| |||||||||  | | ||||||||||||||||||||||| | || ||||||| ||||||||||  ||||||||||    
T  3836688 atgtcataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaata 3836602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 32410611 - 32410688
Alignment:
Q  492 taagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    ||||||||||||||||  | ||| |||||||||||||| |||||||| || ||||||| ||||||||||| |||||||    
T  32410611 taagctgttttcataagttattcaaaacagtttcacaaatgcttatgccaatagataagctcaaataagccaatccaa 32410688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 517 - 560
Target Start/End: Original strand, 19624273 - 19624316
Alignment:
Q  517 aacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  19624273 aacagtttcacaagtgcttatgtcaatagataaactcaaataag 19624316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 492 - 566
Target Start/End: Original strand, 1710801 - 1710874
Alignment:
Q  492 taagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatc 566  Q
    |||||||||||| |||||||||| ||||||| ||||||| | |||||| | ||||||| ||||||||||||||||    
T  1710801 taagctgttttcttaaacttttc-aaacagtgtcacaagggattatgttagtagataagctcaaataagctaatc 1710874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 3501147 - 3501053
Alignment:
Q  307 ataaacagcttaattaaacacatatatcataaacatttatcataaagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||| ||||||||||||| |||| ||||| || |||||| | | ||||||| ||||||||| || ||||| |||| ||||||||||||||||    
T  3501147 ataaacaacttaattaaacacttataacataagcagttatcacataatgcttatgtataagctaattatataataaaagataaaataaagtcaaa 3501053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 561
Target Start/End: Complemental strand, 20547396 - 20547320
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    ||||||||| ||||| | ||||| || |  |||||||| ||||||||| ||||||||||||||||||| ||||||||    
T  20547396 catgtcataggctgtctccataagctctctcaaacagtatcacaagtgtttatgtcattagataaactaaaataagc 20547320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 8094370 - 8094445
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||||||||||||||||| | |  |||| ||| |||||||||||||||  | ||||||| ||||||||||    
T  8094370 catgtcataagctgttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 560
Target Start/End: Complemental strand, 25670592 - 25670517
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||| |||||||||||  |||  |||||||| ||||||| |||||||||| ||||||| ||||| ||||    
T  25670592 catgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaagtaag 25670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 49060484 - 49060523
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49060484 tataagctatttctataacaaaaaataaaataaagtcaaa 49060523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 22388090 - 22388001
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatca-taaagtgcttat-tataagctacttctataacaaaaaataaaa 390  Q
    ||||||||||| ||||||||| | | |||| |||||||| |||||| | ||||||||||  |||||||| ||||||||||||| ||||||    
T  22388090 ttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 538
Target Start/End: Original strand, 40009544 - 40009593
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 538  Q
    ||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  40009544 tcataagctattttcataaattctaccaaacagtttcacaagtgcttatg 40009593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 569
Target Start/End: Complemental strand, 1645706 - 1645622
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    ||||||||||| ||||| |||||  ||| ||| |||||  ||||| ||||||||||| |||||||||| |||||| | |||||||    
T  1645706 catgtcataagttgtttacataagttttcccagacagtgccacaattgcttatgtcagtagataaactaaaataatccaatccaa 1645622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 443 - 487
Target Start/End: Original strand, 3468641 - 3468685
Alignment:
Q  443 gagaacttgtggaaacaagttggaaacaacttgtggacatatcat 487  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  3468641 gagaacttgtggaaataagttggaaacaacttatggacatgtcat 3468685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 35809046 - 35808990
Alignment:
Q  346 tcataaagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| |||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  35809046 tcataaagtgtttatgtataagctatttctataacaaaagataaaatatagtcaaac 35808990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 28727769 - 28727682
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||| |||| ||||| || |  |||||||| || ||||| |||| ||||  |||||| |||||||||| |||||||||||    
T  28727769 catgtcataagccgtttccataagctctctcaaacagtctcgcaagttcttaggtcaaaagataagctcaaataagttaatccaaata 28727682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 42656459 - 42656498
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  42656459 tataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 559
Target Start/End: Original strand, 21247576 - 21247638
Alignment:
Q  497 tgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||| || || |||||||||||||||||| |||||    |||||||||||||||||    
T  21247576 tgttttcataagctcttgcaaacagtttcacaagtggttatgcaggtagataaactcaaataa 21247638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 570
Target Start/End: Complemental strand, 28691838 - 28691757
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||||  | | || |||||| |||||| ||||||||| |  |||||||||||||||||  ||||||||    
T  28691838 gtcataagctgttttcataagatct-ccgaacagtctcacaaatgcttatgttagcagataaactcaaataagtcaatccaaa 28691757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 570
Target Start/End: Original strand, 29363603 - 29363657
Alignment:
Q  516 aaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||| |||||||||||||||| | |||||||  |||||||||| ||||||||    
T  29363603 aaacagtctcacaagtgcttatgttagtagataagttcaaataagccaatccaaa 29363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 569
Target Start/End: Complemental strand, 425830 - 425745
Alignment:
Q  485 catgtcataagctgtttt-cataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    |||||||||||||||||| | |||  | | |||||||||  |||| ||||||||| || ||||||| ||||||||||| |||||||    
T  425830 catgtcataagctgtttttcgtaagttctcccaaacagtgccacatgtgcttatgccagtagataatctcaaataagccaatccaa 425745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 3610746 - 3610661
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||| |||||||| |||||  ||| ||||| ||| ||||||||| ||| | || ||||||| ||||||||||| ||| ||||    
T  3610746 catgtcattagctgtttccataaggtttcccaaaaagtatcacaagtggttaggccagtagataagctcaaataagccaattcaaa 3610661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 402
Target Start/End: Complemental strand, 5715164 - 5715123
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaaca 402  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  5715164 tataagctatttctataacgaaagataaaataaagtcaaaca 5715123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 6552458 - 6552365
Alignment:
Q  301 gattggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaata 392  Q
    |||||||||| || ||||||||||||| || |||||||  | |||||||| |||||||||| || ||| || ||||| ||||||| ||||||||    
T  6552458 gattggataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 12242128 - 12242229
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||| || |||||||||| |||| ||||| |  |||||||  ||||| |||| ||||||| | ||| |||||||||||||||| ||||| |||    
T  12242128 ttggataaacaactcaattaaacacttatagcataagctcttatcatggaagtgtttatgtataagccatttccataacaaaaaataaaacaaagttaaa 12242227  T
Q  401 ca 402  Q
    ||    
T  12242228 ca 12242229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 398
Target Start/End: Original strand, 28178913 - 28178950
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtca 398  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  28178913 tataagctatttctataacaaaagataaaataaagtca 28178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 560
Target Start/End: Complemental strand, 31002881 - 31002812
Alignment:
Q  491 ataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||||| |||| ||  |||||||||| |||||| |||||||| || ||||||| ||||| ||||    
T  31002881 ataagctgtttttataagctcatccaaacagtctcacaattgcttatgacagtagataagctcaattaag 31002812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 559
Target Start/End: Original strand, 41040230 - 41040303
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||||||||||||||| ||||| || ||| ||| ||  |||||| | ||||| ||| |||||||||||||||||    
T  41040230 atgtcataagctgtttccataagctcttctaaagagcctcacaaatacttatatcagtagataaactcaaataa 41040303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 45593866 - 45593805
Alignment:
Q  342 tttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| || ||||||| ||||||||| |||| |||||||| |||||||||||||||||    
T  45593866 tttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaac 45593805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 46281247 - 46281218
Alignment:
Q  371 ttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||||||||||||||||||    
T  46281247 ttctataacaaaaaataaaataaagtcaaa 46281218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 32515447 - 32515362
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||| ||||||| ||||| || | ||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||    
T  32515447 catgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgctaatccaaa 32515362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 485 - 574
Target Start/End: Complemental strand, 18327152 - 18327063
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatata 574  Q
    ||||||||||| |||||||||||  | ||||||| ||| ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  18327152 catgtcataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatccaaatata 18327063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 485 - 571
Target Start/End: Original strand, 15581318 - 15581404
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaat 571  Q
    ||||||||||| ||||| ||| | || ||||||||| | |||||||||||||||||| ||||||| || |||||||||| |||||||    
T  15581318 catgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataagctattccaaat 15581404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 30259675 - 30259573
Alignment:
Q  301 gattggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttatt-ataagctacttctataacaaaaaataaaataaagtca 398  Q
    ||||||||||||| |||||| || ||| |||| |||| ||| |||||||| ||||||||||  | |||||| ||||||||||||| ||||||||||||||    
T  30259675 gattggataaacaacttaataaagcacttataacatacacacttatcatagaagtgcttatgcacaagctatttctataacaaaatataaaataaagtca 30259576  T
Q  399 aac 401  Q
    |||    
T  30259575 aac 30259573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 3597287 - 3597202
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||| | |||| || |||| ||||||||||| ||||||||| |||| ||||||||||| ||||||||||  ||||||||    
T  3597287 catgtcataagttatttttatcaactcttccaaacagtctcacaagtggttatatcattagataacctcaaataagtcaatccaaa 3597202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 6265038 - 6265077
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6265038 tataagctacttctataacaaaaaataaaataaagtcaaa 6265077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 35350505 - 35350587
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgctta-ttataagctacttctataacaaaa 383  Q
    ||||||||||| | ||||||||| |||||| || |||||||||||||| |||| |||| |||||||||| |||||||||||||    
T  35350505 ttggataaacaacataattaaacgcatatagcacaaacatttatcatacaagttcttatttataagctatttctataacaaaa 35350587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 45107532 - 45107606
Alignment:
Q  328 atatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||| ||||||||| ||||||| |||||||||| ||||||||| |||||||| |||| |||||||||||||||||    
T  45107532 atatagcataaacatctatcatataagtgcttatctataagctatttctataagaaaa-ataaaataaagtcaaac 45107606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 3215785 - 3215873
Alignment:
Q  485 catgtcataagctgttttcataaacttttc--caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||||| ||| |||||| ||| |  |||||||| |||||| ||||||||| | || ||||||||||||||| |||||||||||    
T  3215785 catgtcataagct-tttccataaattttccgtcaaacagtctcacaaatgcttatgttaataaataaactcaaataagataatccaaata 3215873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 4868464 - 4868537
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||| ||||| |||||||| |  |||||||| |||||||||| ||||||| |||||||| ||||||||    
T  4868464 catgtcataagttgttt-cataaactctctcaaacagtctcacaagtgcctatgtcaatagataaattcaaataa 4868537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 567
Target Start/End: Original strand, 43420322 - 43420404
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcc 567  Q
    ||||||||||||||||| |||||  | |  ||| |||| ||||||||| |||||||  ||||||| |||||||||||||||||    
T  43420322 catgtcataagctgtttccataagatctcacaagcagtctcacaagtgtttatgtctgtagataagctcaaataagctaatcc 43420404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 4549547 - 4549462
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||| |||||  |||| || | ||||||||| ||| || |||||||| || ||||||| ||||||||||| ||||||||    
T  4549547 catgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 6292557 - 6292641
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||| | ||| | | ||||||| | ||| |||||||||||||| ||||||| ||||||||||  ||||||||    
T  6292557 catgtcataagctgttttaa-aaattctcccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 28467315 - 28467230
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||| ||| |||| ||| ||||| || | ||||||||||||||||||| || ||||| ||||||| |||||| |||| ||||||||    
T  28467315 catgccatgagctatttccataagctctcccaaacagtttcacaagtgtttgtgtcaatagataagctcaaacaagccaatccaaa 28467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 569
Target Start/End: Original strand, 38001663 - 38001743
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    ||||||||||||||||||||  | | ||||||||| ||||||   ||||||||| | |||||||||||||||||| ||||||    
T  38001663 gtcataagctgttttcataagttctcccaaacagtctcacaaaa-cttatgtcagttgataaactcaaataagcttatccaa 38001743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 577
Target Start/End: Original strand, 601104 - 601196
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatatacct 577  Q
    ||||||||||| ||||||| || | | | ||||||||| ||| |||||||||||| || |||||| ||||| ||||  |||||||| ||||||    
T  601104 catgtcataagttgttttcttagattctcccaaacagtctcaaaagtgcttatgttatcagataagctcaagtaagtcaatccaaacatacct 601196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 561
Target Start/End: Complemental strand, 8780430 - 8780354
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    ||||||||||| |||||| |||| || |  ||||||| |||||||||  ||| | ||||||||||||||||||||||    
T  8780430 catgtcataagttgtttttataagctctctcaaacagattcacaagtagttacgacattagataaactcaaataagc 8780354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 569
Target Start/End: Complemental strand, 10199414 - 10199330
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    ||||||||||||| ||||||| |  | | ||||| ||| |||||||||||||||| | ||||||| ||||||||||  |||||||    
T  10199414 catgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 572
Target Start/End: Original strand, 34668759 - 34668807
Alignment:
Q  524 tcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||| |||||| || |||||||||||||||| ||||||||||    
T  34668759 tcacaagtgctcatgtcagtacataaactcaaataagccaatccaaata 34668807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 35080196 - 35080156
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  35080196 tataagcaatttctataacaaaaaataaaataaagtcaaac 35080156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 4757402 - 4757477
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||| |||||||||||  | | |||||  || ||||||||| |||||||| ||||||| ||||||||||    
T  4757402 catgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagctcaaataag 4757477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 572
Target Start/End: Original strand, 5157140 - 5157223
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||| |||||  |||| || | ||||||||||||||||||| |||||||  |||||||  |||||||||  ||||||||||    
T  5157140 tcataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtcaatccaaata 5157223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Original strand, 7941672 - 7941715
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaa 529  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||    
T  7941672 atgtcataagctgttttcataaattcttccaaacagtctcacaa 7941715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 573
Target Start/End: Original strand, 14559085 - 14559124
Alignment:
Q  534 ttatgtcattagataaactcaaataagctaatccaaatat 573  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  14559085 ttatgtcagtagataacctcaaataagctaatccaaatat 14559124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 566
Target Start/End: Complemental strand, 28837358 - 28837278
Alignment:
Q  485 catgtcataagctgttttcataaa-cttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatc 566  Q
    ||||||||||||||||||| |||  || ||  ||||||| || ||||||||||||||| ||||||| ||||||||||| ||||    
T  28837358 catgtcataagctgttttcgtaagtctctt--aaacagtctctcaagtgcttatgtcagtagataagctcaaataagccaatc 28837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 548
Target Start/End: Original strand, 34536222 - 34536285
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagata 548  Q
    ||||||||||||||||||||||| |  |  |||||||| ||||||||| |||||||| ||||||    
T  34536222 catgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtcaatagata 34536285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 400
Target Start/End: Original strand, 36602674 - 36602773
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||| |||| || |||||||| ||| |||||||||||  ||||||||| ||||| |||| |||||||||  |||| ||||| | ||||||||||||||||    
T  36602674 ttggttaaatagtttaattaagcacttatatcataaatttttatcatataagtgattatgtataagctatatctacaacaatagataaaataaagtcaaa 36602773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 514 - 572
Target Start/End: Complemental strand, 7252597 - 7252539
Alignment:
Q  514 ccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||| ||||| ||||||| | ||||| | ||||||||||||||| ||||||    
T  7252597 ccaaacagtttctcaagtacttatgttagtagattagctcaaataagctaattcaaata 7252539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 512 - 570
Target Start/End: Original strand, 21002246 - 21002304
Alignment:
Q  512 ttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||| |||||||| ||||||  | ||||||| ||||||||||| ||||||||    
T  21002246 ttccaaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaa 21002304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 24702205 - 24702243
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  24702205 tataagctatttctataacaaaaaattaaataaagtcaa 24702243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 25944506 - 25944580
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||||||| ||||| | ||| ||| ||| ||||||||| |||||||| || |||| | ||||||||    
T  25944506 atgtcataagctgtttttataaattattcaaaatagtctcacaagtgtttatgtcagtaaataagcgcaaataag 25944580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 26293231 - 26293193
Alignment:
Q  362 ataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  26293231 ataagctatttctataacaaaaagtaaaataaagtcaaa 26293193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 489 - 559
Target Start/End: Complemental strand, 34422176 - 34422106
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||| ||||| || ||||| |  |||| ||| |||||||||||||||||| |||||||| ||||||||    
T  34422176 tcataagttgtttccaaaaactctatcaaagagtatcacaagtgcttatgtcactagataaattcaaataa 34422106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 46499991 - 46499941
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  46499991 aagtgcttatctataagctatttctataagaaaagataaaataaagtcaaa 46499941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 399
Target Start/End: Original strand, 50319236 - 50319274
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  50319236 tataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Original strand, 2832075 - 2832120
Alignment:
Q  524 tcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    |||||||||||||||  | ||||||| |||||||||||||||||||    
T  2832075 tcacaagtgcttatgctagtagataagctcaaataagctaatccaa 2832120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 5422056 - 5422007
Alignment:
Q  351 aagtgcttattataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||||||| ||| || |||||| |||||||| |||||||    
T  5422056 aagtgcttattataagctatttccatgacaaaagataaaatatagtcaaa 5422007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 15437910 - 15437947
Alignment:
Q  364 aagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  15437910 aagctatttctataacaaaaaataaaattaagtcaaac 15437947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 570
Target Start/End: Complemental strand, 41638310 - 41638229
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||| |||||||||||| || | ||||||||| |||||| |||||||| || ||||||  ||||| ||||  ||||||||    
T  41638310 tcataaactgttttcataatctctcccaaacagtctcacaaatgcttatgccagtagataggctcaattaagacaatccaaa 41638229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 571
Target Start/End: Complemental strand, 49282713 - 49282634
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaat 571  Q
    |||||||||||||||||| || ||| | | ||| ||||||||| |||||| | |||| || |||||||||||||||||||||    
T  49282713 cataagctgttttcataagctcttc-agatagtctcacaagtgtttatgttagtagacaa-ctcaaataagctaatccaaat 49282634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 304 - 401
Target Start/End: Complemental strand, 1259 - 1160
Alignment:
Q  304 tggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| |||||||||  || |||| ||||||| | ||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 1160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 2716 - 2815
Alignment:
Q  304 tggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| |||||||||  || |||| ||||||| | ||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 34563137 - 34563235
Alignment:
Q  306 gataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaaca 402  Q
    |||||||| ||||||||||| | |||| ||||||||||||||||| |||||||||| |||||| || |||||| |||||  ||||||||||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagtcaaaca 34563235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 2488014 - 2487929
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||| ||||| |||||||||||  | | ||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  2488014 catgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 488 - 570
Target Start/End: Original strand, 16162827 - 16162909
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||||  | ||||||||||||||||||| ||||||||    
T  16162827 gtcataagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 16162909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 563
Target Start/End: Complemental strand, 9541170 - 9541093
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagcta 563  Q
    |||||||||| |||||||||||||| | |||||||||   ||| |||||||||||| |||||| ||||||||||||||    
T  9541170 atgtcataagatgttttcataaactctcccaaacagtaatacacgtgcttatgtcagtagatagactcaaataagcta 9541093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 30191147 - 30191070
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagct 562  Q
    ||||||||||| ||||| ||||| || | ||||||||| | ||||||||||||| || ||||||||||||||||||||    
T  30191147 catgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataagct 30191070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 396
Target Start/End: Original strand, 7026615 - 7026710
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagt 396  Q
    ||||||||||| ||||||||| ||  || | ||||||||||||||||| ||||||||||  ||||||||||  |||||||||| ||||||||||||    
T  7026615 ttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgcttatgcataagctactgttataacaaaagataaaataaagt 7026710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 39551215 - 39551128
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||| ||||| |||||| | | |||||||||||||||| ||||||| ||  ||||||| ||||||||||  ||||||||||    
T  39551215 catgtcataagttgtttccataaattctcccaaacagtttcacaaatgcttatatccgtagataatctcaaataagtcaatccaaata 39551128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 570
Target Start/End: Original strand, 7714310 - 7714391
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||| ||||| || || |||||||||||||| ||||||||| ||||| ||||| |||| ||||||||||  ||||||||    
T  7714310 tcataagttgtttccacaagcttttccaaacagtctcacaagtgtttatgacattatataagctcaaataagtcaatccaaa 7714391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 338 - 401
Target Start/End: Original strand, 14949807 - 14949872
Alignment:
Q  338 aacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  14949807 aacatttatcatacaagttcttatgtataagctacttctataacaaaagataaaatagagtcaaac 14949872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 559
Target Start/End: Original strand, 26499785 - 26499854
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||||||||||||||||| || | | ||| ||| |||||||||||||||||| |||||||| ||||||||    
T  26499785 cataagctgttttcataacctctacaaaatagtctcacaagtgcttatgtcagtagataaattcaaataa 26499854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 33553304 - 33553389
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||| || ||  |||| || ||||||||||  ||||||||||||||||   ||||||| ||||||||||||||||||||    
T  33553304 catgtcataagttgcttcaataagctcttccaaacagcatcacaagtgcttatgttgatagataagctcaaataagctaatccaaa 33553389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 44236797 - 44236744
Alignment:
Q  517 aacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||| ||||||||||||||| || |||||||||||||||||| |||||||||    
T  44236797 aacagtctcacaagtgcttatgccagtagataaactcaaataaggtaatccaaa 44236744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 26410344 - 26410431
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||| |||||||| ||||| || | |||| |||| ||| |||||||||||||| | |||||||| || ||||| ||||||||||    
T  26410344 catgtcatgagctgtttccataagctctcccaagcagtctcagaagtgcttatgtcagttgataaacttaactaagccaatccaaata 26410431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 34770932 - 34771007
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||||||||||||   | |  ||||||||||||||||||||||||  |  |||||||||||||||||    
T  34770932 catgtcataagctgttttcataggatctctcaaacagtttcacaagtgcttatgctagcagataaactcaaataag 34771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 490 - 541
Target Start/End: Complemental strand, 43908701 - 43908650
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtca 541  Q
    |||||||||||||| |||||| |  |||||||||||||||||||||||||||    
T  43908701 cataagctgttttcttaaactctctcaaacagtttcacaagtgcttatgtca 43908650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 11000693 - 11000648
Alignment:
Q  355 gcttattataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||||||    
T  11000693 gcttattataagctatttccataacaaaagataaaataaagtcaaa 11000648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 43368706 - 43368621
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||| ||||||||||| || || ||| |||| |||||| ||||||||| | |||||||  |||||||||  ||||||||    
T  43368706 catgtcataagttgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagataagatcaaataagtcaatccaaa 43368621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 560
Target Start/End: Complemental strand, 2364455 - 2364391
Alignment:
Q  496 ctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||||| || ||||||||||| |||||||| |||||||||  ||||||  |||||||||    
T  2364455 ctgttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataag 2364391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 570
Target Start/End: Complemental strand, 6496896 - 6496812
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||| |||||| ||| ||||| |||| |||||||||  |||||||| |||||| | |||||||||||||| |||  ||||||||    
T  6496896 atgtcttaagctatttccataagctttcccaaacagtcacacaagtgattatgttagtagataaactcaaacaagtcaatccaaa 6496812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 24326099 - 24326167
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaat 557  Q
    |||||| |||||| ||||| || | ||||||||| ||||||||||||||| || ||||||| |||||||    
T  24326099 tcataaactgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 26716618 - 26716542
Alignment:
Q  307 ataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaa 381  Q
    ||||||| || |||||| ||| |||| |||||||| |||| ||| |||||||||| |||||||||||||||||||||    
T  26716618 ataaacaactaaattaagcacctatagcataaacacttattatataagtgcttatgtataagctacttctataacaa 26716542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 29169941 - 29169889
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 538  Q
    |||||||| ||||||||||||| || | ||||||| |||||||||||||||||    
T  29169941 atgtcatatgctgttttcataagctctcccaaacaatttcacaagtgcttatg 29169889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 3953895 - 3953942
Alignment:
Q  514 ccaaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    ||||||||||||||||||||||||| || ||||||  |||||||||||    
T  3953895 ccaaacagtttcacaagtgcttatgccagtagataggctcaaataagc 3953942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 7646270 - 7646345
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||||| ||||||||||| | | ||||||| | |||| ||||||||||||| ||| ||| || |||||||    
T  7646270 catgtcataagcagttttcataaattctcccaaacattgtcactagtgcttatgtcagtagttaagcttaaataag 7646345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 14482126 - 14482185
Alignment:
Q  343 ttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||| |||||||||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  14482126 ttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 37822653 - 37822578
Alignment:
Q  497 tgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||| ||||| |||  |||||||| |||||| |  |||||||||||||||||||||||||| | | ||||||||    
T  37822653 tgttttaataaattttctcaaacagtctcacaaataattatgtcattagataaactcaaataatcaattccaaata 37822578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 560
Target Start/End: Complemental strand, 39881727 - 39881652
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||| |||||| || || ||||||||| | ||||||||| ||||| || |||||||  |||||||||    
T  39881727 catgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataagttcaaataag 39881652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 42370367 - 42370324
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcaca 528  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||    
T  42370367 catgtcatacgctattttcataaactttcccaaacagtttcaca 42370324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 1889124 - 1889066
Alignment:
Q  502 tcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||| |||| ||||||||| ||| ||||| ||||| || ||||||||||||||||||    
T  1889124 tcataagctttcccaaacagtctcaaaagtgtttatgccagtagataaactcaaataag 1889066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 4560605 - 4560651
Alignment:
Q  524 tcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||| ||||||| ||||||||||  ||||||||    
T  4560605 tcacaagtgcttatgtcaatagataagctcaaataagtcaatccaaa 4560651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 26820137 - 26820183
Alignment:
Q  355 gcttattataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||| |||||| || ||||||||||||| |||||||||||||||||    
T  26820137 gcttagtataagttatttctataacaaaagataaaataaagtcaaac 26820183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 12972740 - 12972833
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaa 394  Q
    ||||| ||||| ||||||||| | | |||| ||||| ||||||||||| |||||||||| ||||||||| ||| |||||| || || |||||||    
T  12972740 ttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataacagaagatgaaataaa 12972833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 25881391 - 25881350
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaa 556  Q
    |||||||| |||||||| ||||||||| ||||||||||||||    
T  25881391 caaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 29699164 - 29699237
Alignment:
Q  329 tatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||| |||||| |||||||||| || ||||||| || ||| || ||||||||||||| ||||||||||||||||    
T  29699164 tatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 486 - 559
Target Start/End: Original strand, 27857423 - 27857496
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||||||||| ||||||||||| || | |||||||||||||||||||  ||||||| |||||||||||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaataa 27857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 485 - 549
Target Start/End: Original strand, 33385593 - 33385657
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataa 549  Q
    |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||    
T  33385593 catgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataa 33385657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 489 - 571
Target Start/End: Complemental strand, 26559241 - 26559159
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaat 571  Q
    ||||||| |||||||||||  | ||||||||||| |||||| |||||||| || ||| |||||||||||||| ||||||||||    
T  26559241 tcataagttgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaataagttaatccaaat 26559159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 5328862 - 5328958
Alignment:
Q  307 ataaacagcttaattaaacacatatatcataaacatttatcataaa-gtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||||||||||| |||||||| ||||||   |||||||||| |||||||  | |||| || ||||||||||||| |||||||||||||||||    
T  5328862 ataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagtcaaac 5328958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 418 - 559
Target Start/End: Original strand, 33887831 - 33887968
Alignment:
Q  418 ataaactgttttcataagc-atcatggagaacttgtggaaacaagttggaaacaacttgtggacatatcatgtcataagctgttttcataaacttttcca 516  Q
    ||||||||||||||||||| ||| || |   ||| |||||| |||||| ||||||||||||     | ||||||||||||| |||||||||| | |  ||    
T  33887831 ataaactgttttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtg-----aacatgtcataagctattttcataaattctctca 33887925  T
Q  517 aacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||| | ||||||||||| |||||| || ||||||||||||||    
T  33887926 aacaatgtcacaagtgctaatgtcagtaaataaactcaaataa 33887968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 546
Target Start/End: Complemental strand, 2732249 - 2732192
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattaga 546  Q
    |||| |||||||| ||||| |||||||||||||| |||||||||||||||||| ||||    
T  2732249 tcattagctgtttccataagcttttccaaacagtctcacaagtgcttatgtcagtaga 2732192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 5885044 - 5884947
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtca 398  Q
    |||||||||||||||| |||||| | |||| || |||||| ||||||| |||||| ||| |||||  || ||||||||||||||||||||| ||||||    
T  5885044 ttggataaacagcttatttaaactcttatagcacaaacatgtatcatataagtgcatatgtataaattatttctataacaaaaaataaaatgaagtca 5884947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 570
Target Start/End: Complemental strand, 738542 - 738462
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||||||||  || ||| | |||||| || |||| ||| ||||||| |||||||||| |||||||||    
T  738542 cataagctgttttcataaactttatcagacaatctcacaaatgtttatctcaatagataagctcaaataagttaatccaaa 738462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 4420561 - 4420601
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  4420561 tataagctacttctataacaaaagataaaataaagtcaaac 4420601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 570
Target Start/End: Complemental strand, 7901822 - 7901752
Alignment:
Q  500 tttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||| || ||||||||||| ||||||| |||||||  | || ||||||||||||||| |||||||||    
T  7901822 tttcataagctcttccaaacagtctcacaagggcttatgatactatataaactcaaataagttaatccaaa 7901752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 570
Target Start/End: Original strand, 2457033 - 2457090
Alignment:
Q  513 tccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||| | |||||||||||||||  ||||||| ||||||||||| ||||||||    
T  2457033 tccaaacagtcttacaagtgcttatgtcggtagataatctcaaataagccaatccaaa 2457090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 4308885 - 4308926
Alignment:
Q  529 agtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  4308885 agtgcttatgtcagtagataaactcaaataagccaatccaaa 4308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 524 - 560
Target Start/End: Complemental strand, 7351638 - 7351602
Alignment:
Q  524 tcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7351638 tcacaagtgcttatgtcagtagataaactcaaataag 7351602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 2514635 - 2514686
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| ||||||||| |||||||| |||| |||||||||||||||||    
T  2514635 aagtgcttatgtataagctatttctataataaaagataaaataaagtcaaac 2514686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 24774691 - 24774742
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  24774691 aagtgcttatatataaactatttctataacaaaatataaaataaagtcaaac 24774742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 570
Target Start/End: Complemental strand, 32171387 - 32171304
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||||| || |  |||||||| || ||||||||||||||| ||  ||| || |||||||  ||||||||    
T  32171387 tgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtcaatacttaagctgaaataagacaatccaaa 32171304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 283159 - 283213
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgt 539  Q
    |||||||||||||||||| |||   |  |||||||||||||||||||||||||||    
T  283159 catgtcataagctgtttttatacgttcctccaaacagtttcacaagtgcttatgt 283213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 4248891 - 4248941
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  4248891 aagtgcttatatataagctatttcaataacaaaagataaaataaagtcaaa 4248941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 10452496 - 10452446
Alignment:
Q  352 agtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaac 10452446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 559
Target Start/End: Complemental strand, 11600880 - 11600806
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    |||||||||||||||||||| ||||| | | ||||||  ||||||||| |||||||| |||| |  |||||||||    
T  11600880 catgtcataagctgttttcaaaaactctacaaaacagcctcacaagtgtttatgtcagtagaaatgctcaaataa 11600806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 526 - 572
Target Start/End: Complemental strand, 24973992 - 24973946
Alignment:
Q  526 acaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||||||||  ||||||  |||||||||||||||||||||    
T  24973992 acaagtgcttatgtcagcagataagttcaaataagctaatccaaata 24973946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 565
Target Start/End: Original strand, 31774455 - 31774521
Alignment:
Q  499 ttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaat 565  Q
    ||||||| | || ||||||||||| ||| ||||||||||| |  |||||||||||||||||| ||||    
T  31774455 ttttcatgagctcttccaaacagtctcataagtgcttatgccggtagataaactcaaataagataat 31774521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 1810271 - 1810226
Alignment:
Q  525 cacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||| |||| |||||||||||| | ||||||||    
T  1810271 cacaagtgcttatgtcagtagacaaactcaaataaaccaatccaaa 1810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 7785750 - 7785665
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||   ||||||  | ||| ||||  || |||||||||||||| |||||||| |||||||||  ||||||||    
T  7785750 catgtcataagctgtttctgtaaactccttcaatcagtcccaaaagtgcttatgtcagtagataaattcaaataagacaatccaaa 7785665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 30784500 - 30784541
Alignment:
Q  360 ttataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  30784500 ttataagctttttctataacaaaagataaaataaagtcaaac 30784541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 33259882 - 33259955
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    |||||||| ||| |||| |||||||| |||||||||||||  ||||||||||| ||| || ||||  |||||||    
T  33259882 catgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaata 33259955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 33737664 - 33737709
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||| |||||||| |||||||| ||||||||||| ||||||    
T  33737664 caaacagttgcacaagtgtttatgtcaatagataaactcgaataag 33737709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 34939808 - 34939881
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    ||||||||||||||||| | ||| || | | |||||||||||||| || |||||||| ||||||| || |||||    
T  34939808 catgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataagctgaaata 34939881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 486 - 570
Target Start/End: Original strand, 10640019 - 10640102
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||||||  | | ||||||| | ||||||   ||||||||| ||||||||||||||||||||||||||||    
T  10640019 atgtcataagctgttttcataagttctcccaaacaatatcacaaaa-cttatgtcagtagataaactcaaataagctaatccaaa 10640102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 416 - 570
Target Start/End: Original strand, 4619706 - 4619856
Alignment:
Q  416 ctataaactgttttcataagc-atcatggagaacttgtggaaacaagttggaaacaacttgtggacatatcatgtcataagctgttttcataaacttttc 514  Q
    ||||||||||| ||||||||| |||||||||||||| |||||| ||| || || || ||| || ||||     ||||| || ||||||||||| || | |    
T  4619706 ctataaactgtcttcataagctatcatggagaacttatggaaataaggtgaaaccagcttatgaacat-----gtcattagttgttttcataagctctcc 4619800  T
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||| |  |||||||||||||||  | |||||| ||||||||| ||||||||    
T  4619801 caaacagtgttgcaagtgcttatgtcagcaaataaacacaaataagccaatccaaa 4619856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 566
Target Start/End: Complemental strand, 13244551 - 13244476
Alignment:
Q  491 ataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatc 566  Q
    ||||| ||||||||||| || ||||||||||| ||| ||||| |||| ||| ||||||||||||||||||| ||||    
T  13244551 ataagttgttttcataagctcttccaaacagtgtcataagtgtttatttcaatagataaactcaaataagcaaatc 13244476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 1084115 - 1084070
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  1084115 caaacagtttcacaagtgcttatgtcagtaaataaactcaaataag 1084070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 29115399 - 29115302
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcataaa-gtgcttat-tataagctacttctataacaaaaaataaaataaagtca 398  Q
    |||||||||||  |||||||  | | |||| ||||||||||||||||||| |||||||| ||||||||| ||||| |||||||  |||||||||||||    
T  29115399 ttggataaacactttaattacgcgcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 7096297 - 7096213
Alignment:
Q  319 attaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||  |||| ||||  |||| |||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  7096297 attaaacatttatagcatatgcattaatcatacaagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 7096213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 570
Target Start/End: Complemental strand, 36796688 - 36796628
Alignment:
Q  510 ttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||| |||| ||||||||| |||||||||||||||| ||||||||||  ||||||||    
T  36796688 ttttccaagcagtctcacaagtgtttatgtcattagataagctcaaataagtcaatccaaa 36796628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 488 - 567
Target Start/End: Complemental strand, 5377200 - 5377121
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcc 567  Q
    ||||||||||||||||||||  | |  | |||||| | |||||||||||||||| ||||||| ||||||||||| |||||    
T  5377200 gtcataagctgttttcataagttatcgctaacagtcttacaagtgcttatgtcaatagataagctcaaataagccaatcc 5377121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 499 - 570
Target Start/End: Original strand, 12930650 - 12930721
Alignment:
Q  499 ttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||| | || ||||||  || |||||||||||||| | ||| ||||||||||||||||||||||    
T  12930650 ttttcataaactctcccgaacagtcgcagaagtgcttatgtcagttgatgaactcaaataagctaatccaaa 12930721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 515 - 570
Target Start/End: Original strand, 42034154 - 42034209
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||| || |||||||||||||| ||| ||| ||||||||||||||||||||    
T  42034154 caaacagttgcataagtgcttatgtcagtaggtaagctcaaataagctaatccaaa 42034209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 401
Target Start/End: Complemental strand, 37063262 - 37063160
Alignment:
Q  301 gattggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtca 398  Q
    |||||||||||||||||||| ||  || |||| ||||||   || ||||| || ||||||| ||||| ||| ||||||||||||| ||||||||||||||    
T  37063262 gattggataaacagcttaatcaactacttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtca 37063163  T
Q  399 aac 401  Q
    |||    
T  37063162 aac 37063160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 499737 - 499652
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||||||||||||||||||  | | ||||||||  | ||| |||||||||||| ||| ||| ||||||||||  ||||||||    
T  499737 catgtcataagctgttttcataagttctcccaaacagcctaacaggtgcttatgtcagtaggtaagctcaaataagtcaatccaaa 499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 10771864 - 10771807
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||| | ||||||||||||||| || ||||||| ||||||||||| ||||||||||    
T  10771864 caaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaata 10771807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 22195610 - 22195671
Alignment:
Q  499 ttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||||||||  ||||||||||| || |||| |||||||||| || |||||||||||||||||    
T  22195610 ttttcataagattttccaaacacttgcacaggtgcttatgttataagataaactcaaataag 22195671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 26516182 - 26516275
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaa 394  Q
    ||||||||||| ||||||||| | | |||| ||||| |  |||||||| |||||||||| ||||||||| ||||| ||||||| ||||||||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 42646955 - 42647039
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||| |||||||||  | ||||||| ||| |  |||||||| |||||| ||||||| ||||||||||| ||||||||    
T  42646955 catgtcataagctattttcataagttcttccaaatagtctt-caagtgctaatgtcagtagataagctcaaataagccaatccaaa 42647039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 557
Target Start/End: Original strand, 7907958 - 7908018
Alignment:
Q  497 tgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaat 557  Q
    |||||||||||  | ||||||||||| ||| ||||| |||||| |||||||||||||||||    
T  7907958 tgttttcataagttcttccaaacagtctcataagtgtttatgttattagataaactcaaat 7908018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 518 - 570
Target Start/End: Complemental strand, 25720390 - 25720338
Alignment:
Q  518 acagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||| ||||||||||||||| || ||||||| ||||||||||||||| ||||    
T  25720390 acagtctcacaagtgcttatgccagtagataacctcaaataagctaattcaaa 25720338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 39128574 - 39128622
Alignment:
Q  353 gtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  39128574 gtgcttatgtataagctaattctataacaaaagataaaataaagtcaaa 39128622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 303 - 401
Target Start/End: Complemental strand, 39257572 - 39257472
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||| ||||||||| | | |||| |||||||  |||||||  |||||||||| |||| ||||  ||||||||||||  |||||||||||||||    
T  39257572 ttggataaacaacttaattaagcgcttatagcataaactattatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtcaaa 39257473  T
Q  401 c 401  Q
    |    
T  39257472 c 39257472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 561
Target Start/End: Original strand, 40534263 - 40534339
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    |||||||||||||  || ||||| || | | ||||||| ||||||||| |||||||| || ||||||||||||||||    
T  40534263 catgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaaataagc 40534339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 560
Target Start/End: Original strand, 11457162 - 11457237
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| || || || ||||||| ||||||||||    
T  11457162 catgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagctcaaataag 11457237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 570
Target Start/End: Complemental strand, 14714835 - 14714764
Alignment:
Q  499 ttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||| || | ||||| |||||||||||||||||||||| | ||||| ||||||| ||| ||| ||||    
T  14714835 ttttcataatctctcccaaatagtttcacaagtgcttatgtcagtggataagctcaaatgagccaattcaaa 14714764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 560
Target Start/End: Complemental strand, 38034033 - 38033958
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    |||| ||||||||||||| ||||  | ||||||||||| ||||| ||||||||| || |||| || ||||||||||    
T  38034033 catgccataagctgttttaataacttcttccaaacagtctcacaggtgcttatgccagtagaaaagctcaaataag 38033958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 2568723 - 2568797
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||||||||||||||||  | ||| ||||||| || ||||||||||   || ||||||| ||||||||||    
T  2568723 atgtcataagctgttttcataagttcttctaaacagtctctcaagtgcttacaccagtagataagctcaaataag 2568797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 13224348 - 13224406
Alignment:
Q  338 aacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaa 394  Q
    |||| |||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||    
T  13224348 aacagttatcatagaagtgcttatgtataagctatttctataacaaaagataaaataaa 13224406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 20982281 - 20982223
Alignment:
Q  343 ttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    |||||||| |||||||||| ||||||||| ||||||||||||  |||||||||||||||    
T  20982281 ttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaa 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 570
Target Start/End: Complemental strand, 40335876 - 40335794
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||| ||||| ||| |||||||| | ||||||||| ||||||||| || ||  | ||||||||||||||||||  ||||||||    
T  40335876 gtcacaagctctttccataaactctaccaaacagtctcacaagtgtttgtgcgagtagataaactcaaataagtcaatccaaa 40335794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 572
Target Start/End: Complemental strand, 11615658 - 11615573
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||| |||||||||| ||  |   ||||| ||| ||||||| |||||| | ||||||| ||||||||||| ||||||||||    
T  11615658 tgtcataagttgttttcatacacactctaaaacattttgacaagtgtttatgttagtagataagctcaaataagccaatccaaata 11615573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 14295449 - 14295490
Alignment:
Q  360 ttataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||| ||||| ||||||||||||| |||||||||||||||||    
T  14295449 ttattagctatttctataacaaaagataaaataaagtcaaac 14295490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 14331431 - 14331515
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||  |||  ||||||||||| | |||  |||||||||| || ||||||| ||||||||||  ||||||||    
T  14331431 catgtcataagctgttttg-taagtttttccaaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatccaaa 14331515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 538
Target Start/End: Complemental strand, 16380577 - 16380524
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatg 538  Q
    |||||| |||||||||| |||||||| || |||| |||||||||||| ||||||    
T  16380577 catgtcgtaagctgtttccataaactcttgcaaatagtttcacaagtacttatg 16380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 570
Target Start/End: Original strand, 26516475 - 26516556
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||| || |   ||||| |  |||| ||||||||| || || |||||||||||||||||||| ||||    
T  26516475 tcataagctgttttcataagctctcttaaacattcccacaggtgcttatgccagtaaataaactcaaataagctaattcaaa 26516556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 556
Target Start/End: Original strand, 37968971 - 37969012
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaa 556  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||    
T  37968971 caaacagtttcacaagtacttatgtcagtagataagctcaaa 37969012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 2996637 - 2996724
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||| ||||||||||| || |  |||||||| ||| |||||||||||||| || ||||  ||||||||||||||| |||||    
T  2996637 catgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatctaaata 2996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 578
Target Start/End: Original strand, 19304962 - 19305083
Alignment:
Q  452 tggaaacaagttggaaacaacttgtggacatatcatgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaac 551  Q
    |||||||||| || ||||||||| |||||||     |||||||||||||| || ||| | | ||| ||| | |||||| ||||||||||| ||||||| |    
T  19304962 tggaaacaagctgaaaacaacttatggacat-----gtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatc 19305056  T
Q  552 tcaaataagctaatccaaatataccta 578  Q
    |||||||||  |||||||||| |||||    
T  19305057 tcaaataagtcaatccaaatacaccta 19305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 568
Target Start/End: Original strand, 21157833 - 21157915
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcca 568  Q
    ||||||||||||||||   ||| || ||||||||||| | |||||||||||||||| ||||| | ||||||||||| ||||||    
T  21157833 atgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataagcaaatcca 21157915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 570
Target Start/End: Original strand, 25717660 - 25717742
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||| ||||| ||||| || ||||||||| |||||||||||||||||||  || |||| ||||||||||  ||||||||    
T  25717660 gtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatgtcggtacataagctcaaataagacaatccaaa 25717742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 37636187 - 37636105
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||||  ||||||| | ||||||||||| ||| |||||||||| | |||||||||||||||||   ||||||||||    
T  37636187 cataagctgtttctataaactctcccaaacagttttacaggtgcttatgttagtagataaactcaaataaatcaatccaaata 37636105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 50298580 - 50298653
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||||| |||| ||||  ||||||||||||| |||||||||||||||||| ||||||| || ||||||    
T  50298580 catgtcataagctatttt-ataagtttttccaaacagtctcacaagtgcttatgtcagtagataagctaaaataa 50298653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 570
Target Start/End: Complemental strand, 55870345 - 55870263
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||| || ||||||||| || |  |||| ||| |||||| || ||||||||||||||||||||||||||| |||||||||    
T  55870345 gtcataaacttttttcataagctatctcaaagagtctcacaaatgtttatgtcattagataaactcaaataagttaatccaaa 55870263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 7368060 - 7367975
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||||||||| | || | ||||||||| ||||||| | ||||| |  ||||||||||||||||||  ||||||||    
T  7368060 catgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaa 7367975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 558
Target Start/End: Complemental strand, 8328125 - 8328052
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    ||||||||||  ||||||||||| || ||||||||||| ||| ||||||||||| || ||||||| ||||||||    
T  8328125 catgtcataaattgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 18628555 - 18628486
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    ||||||| ||||||||||| || | ||||||||| ||||||||| |||||||| ||||||| ||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 36048733 - 36048781
Alignment:
Q  351 aagtgcttattataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  36048733 aagtgcttattataagctatttctataacaaaagataaattaaagtcaa 36048781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 485 - 572
Target Start/End: Original strand, 1137776 - 1137863
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    ||||||||||| |||||||||||  | | | ||||||| ||||||||| |||   || |||||||| |||||||||||||||||||||    
T  1137776 catgtcataagatgttttcataagttctcctaaacagtgtcacaagtgtttaaaacactagataaaatcaaataagctaatccaaata 1137863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 51556047 - 51555956
Alignment:
Q  309 aaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtca 398  Q
    ||||| |||||| || ||| |||| ||||| ||||||||||| |||||||||| ||||||||| |  |||||||||| ||||||||||||||    
T  51556047 aaacaacttaataaagcacttataacataaccatttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagtca 51555956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 487 - 573
Target Start/End: Complemental strand, 3639172 - 3639086
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatat 573  Q
    |||||||||||||||  || | || ||||||| | | ||||| |||||||||||  ||||||| ||||||||||| |||||||||||    
T  3639172 tgtcataagctgtttctatcagctcttccaaataatctcacaggtgcttatgtcggtagataagctcaaataagcaaatccaaatat 3639086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 559
Target Start/End: Original strand, 47970392 - 47970434
Alignment:
Q  517 aacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  47970392 aacagtttcacaagtgcttatgtcagtagataagctcaaataa 47970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 25487671 - 25487634
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtca 398  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  25487671 tataagctatttctataacaaaaaataaaataaagtca 25487634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 32071957 - 32072002
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||    
T  32071957 caaactgtctcacaagtgcttatgtcaatagataaactcaaataag 32072002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 573
Target Start/End: Complemental strand, 22236111 - 22236023
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatat 573  Q
    ||||||| |||||||||| |||  || | |||||||||||| |||||| |||||| | || || ||||||||||||| ||| |||||||    
T  22236111 catgtcacaagctgttttaataggctctcccaaacagtttcgcaagtggttatgttagtaaatgaactcaaataagccaattcaaatat 22236023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 23819153 - 23819197
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaa 529  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||    
T  23819153 catgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 573
Target Start/End: Original strand, 25896848 - 25896936
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatat 573  Q
    ||||||||||||| |||  |||| || | | ||||||| ||||||||||| |||  | ||||||||||||||||||  |||||||||||    
T  25896848 catgtcataagctatttctataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagtgaatccaaatat 25896936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 51044585 - 51044545
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  51044585 tataagctatttctataacaaaagataaaataaagtcaaac 51044545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 3175895 - 3175934
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  3175895 tataagctacttctatagcaaaagataaaataaagtcaaa 3175934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 10172126 - 10172200
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcat-tagataaactcaaataa 559  Q
    ||||||| ||||||||| ||||| || |  |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  10172126 catgtcacaagctgtttccataagctatatcaaacagtttcacaagtgcttatg-catatagataagctcaaataa 10172200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 573
Target Start/End: Complemental strand, 25487550 - 25487475
Alignment:
Q  498 gttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaatat 573  Q
    |||| ||||| || ||||||||| | | |||||||||||||  | |||||||||||||||||| ||||| ||||||    
T  25487550 gtttgcataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaataagttaatcaaaatat 25487475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 558
Target Start/End: Original strand, 25606224 - 25606279
Alignment:
Q  503 cataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    ||||||||||  |||||||||| |||||| ||||| ||| ||||||||||||||||    
T  25606224 cataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 25606279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 570
Target Start/End: Original strand, 29375969 - 29376052
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||| ||||| || |   ||| ||  |||||||||||||||||| |||||||  |||||||||| ||||||||    
T  29375969 tgtcataagctgtttccataagctctctgaaatagcgtcacaagtgcttatgtcaatagataagttcaaataagccaatccaaa 29376052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 47970251 - 47970302
Alignment:
Q  351 aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||||||||| ||||||||| ||||||||||||| ||||||| |||||||||    
T  47970251 aagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaac 47970302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 489 - 559
Target Start/End: Original strand, 4071946 - 4072016
Alignment:
Q  489 tcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataa 559  Q
    ||||||||||||||||||| || |  |||||||| |||||||||||||| | | ||| ||| |||||||||    
T  4071946 tcataagctgttttcataagctctctcaaacagtctcacaagtgcttatattaatagttaacctcaaataa 4072016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 4191662 - 4191724
Alignment:
Q  342 tttatcata-aagtgcttat-tataagctacttctataacaaaaaat-aaaataaagtcaaac 401  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||| || |||||||||||||||    
T  4191662 tttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaac 4191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 9316488 - 9316530
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacattta 345  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||    
T  9316488 ttggataaacagcttaattaagcacttatagcataaacattta 9316530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 303 - 396
Target Start/End: Complemental strand, 43533624 - 43533530
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttattataagctacttctataacaaaaaataaaataaagt 396  Q
    ||||||||||| |||| |||| | | || || | |||||||||||||| ||||||||| |||||| || ||||| | |||||| |||||||||||    
T  43533624 ttggataaacaacttagttaagcgcttacattaaaaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagt 43533530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 569
Target Start/End: Original strand, 46860012 - 46860066
Alignment:
Q  515 caaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    ||||||||||||||||||||||||| | |||||||  |||||||||  |||||||    
T  46860012 caaacagtttcacaagtgcttatgtgaatagataagttcaaataagtcaatccaa 46860066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 567
Target Start/End: Original strand, 52172789 - 52172871
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatcc 567  Q
    |||||||||||||||||||||||  ||| || |||||| |||||| | |||||| || ||  ||| ||||||||||| |||||    
T  52172789 catgtcataagctgttttcataagttttccccaacagtctcacaaatacttatgccagtatgtaagctcaaataagccaatcc 52172871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 399
Target Start/End: Complemental strand, 54277440 - 54277402
Alignment:
Q  361 tataagctacttctataacaaaaaataaaataaagtcaa 399  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  54277440 tataaactacttctataacaaaagataaaataaagtcaa 54277402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 488 - 570
Target Start/End: Original strand, 55437144 - 55437225
Alignment:
Q  488 gtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    |||||||| |||||||||||  | || |||||| ||||||||   |||||| || ||||||||||||||||||| ||||||||    
T  55437144 gtcataagttgttttcataagttctttcaaacaatttcacaaaa-cttatggcagtagataaactcaaataagccaatccaaa 55437225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 569
Target Start/End: Original strand, 1017119 - 1017176
Alignment:
Q  512 ttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagctaatccaa 569  Q
    ||||||||||| ||||||||| |||||||| ||||| | ||||||||||  |||||||    
T  1017119 ttccaaacagtctcacaagtgtttatgtcagtagattagctcaaataagtcaatccaa 1017176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 3662283 - 3662332
Alignment:
Q  352 agtgcttattataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    ||||||||| |||| ||| | ||||||||||| |||||||||||||||||    
T  3662283 agtgcttatgataaactattcctataacaaaagataaaataaagtcaaac 3662332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 570
Target Start/End: Original strand, 25571371 - 25571408
Alignment:
Q  533 cttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  25571371 cttatgtcagtagataaactcaaataagccaatccaaa 25571408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 561
Target Start/End: Original strand, 28615619 - 28615664
Alignment:
Q  516 aaacagtttcacaagtgcttatgtcattagataaactcaaataagc 561  Q
    ||||||| | |||| ||||||||||||||||||| |||||||||||    
T  28615619 aaacagtcttacaaatgcttatgtcattagataagctcaaataagc 28615664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 36734784 - 36734877
Alignment:
Q  310 aacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaac 401  Q
    |||| ||||||||||  | |||| |||| || ||||||||| |||||||||| ||||| ||  |||||||||||||  ||||||||||||||||    
T  36734784 aacaacttaattaaaagcttataacatatacctttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaac 36734877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 560
Target Start/End: Original strand, 50746041 - 50746114
Alignment:
Q  487 tgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataag 560  Q
    ||||||||  ||||||||||||||    |||| ||| |||||||||||||||  | ||||||||||||||||||    
T  50746041 tgtcataaattgttttcataaactcacacaaatagtctcacaagtgcttatgcaagtagataaactcaaataag 50746114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 52169986 - 52169941
Alignment:
Q  525 cacaagtgcttatgtcattagataaactcaaataagctaatccaaa 570  Q
    ||||||||||||||| | ||||||||||||||||||  ||||||||    
T  52169986 cacaagtgcttatgtaaatagataaactcaaataagtcaatccaaa 52169941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 42504 - 42592
Alignment:
Q  306 gataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaata 392  Q
    |||||||| ||||||||||||| |||| || | |||||||||||| |||||||||| ||||||  | ||||||||||||| ||||||||    
T  42504 gataaacaacttaattaaacacttatagcagacacatttatcatataagtgcttatgtataagtcatttctataacaaaagataaaata 42592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 3970 - 4043
Alignment:
Q  485 catgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 558  Q
    |||||||| ||| |||| |||||||| ||||||||||| |||||||||||||| ||| || ||||  |||||||    
T  3970 catgtcatgagccgtttccataaactcttccaaacagtctcacaagtgcttatatcaatatataagttcaaata 4043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 557
Target Start/End: Original strand, 4281 - 4352
Alignment:
Q  486 atgtcataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaat 557  Q
    |||||||||| ||||| ||||||||||| |||||||| |||||| |  || | ||| |||||||||||||||    
T  4281 atgtcataagttgtttccataaactttttcaaacagtctcacaaatatttttatcagtagataaactcaaat 4352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 400
Target Start/End: Original strand, 27460 - 27559
Alignment:
Q  303 ttggataaacagcttaattaaacacatatatcataaacatttatcata-aagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaa 400  Q
    ||||||||||| ||||| ||||| | |||| ||||| |  |||||||  |||||||||| |||||| || |||||||||| || ||||||||||||||||    
T  27460 ttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaaa 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 572
Target Start/End: Complemental strand, 98616 - 98569
Alignment:
Q  525 cacaagtgcttatgtcattagataaactcaaataagctaatccaaata 572  Q
    |||||||||||||| |||||||||| ||||||||||||| || |||||    
T  98616 cacaagtgcttatgccattagataagctcaaataagctattcgaaata 98569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 563
Target Start/End: Complemental strand, 4224 - 4151
Alignment:
Q  490 cataagctgttttcataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaataagcta 563  Q
    |||||| ||||| |||||||| |  ||||||   |||||||||||||||||| |||| || |||||||||||||    
T  4224 cataagttgtttccataaactctcacaaacaagctcacaagtgcttatgtcagtagacaagctcaaataagcta 4151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University