View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232-Insertion-3 (Length: 773)
Name: NF2232-Insertion-3
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232-Insertion-3 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 660; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 8 - 773
Target Start/End: Complemental strand, 1892583 - 1891816
Alignment:
| Q |
8 |
cagcttgtgaactatctgtaacgattcagttcttttcagtgtcattcggttcgnnnnnnnn-agtacttttataaacaactctgacattcaatttggatt |
106 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1892583 |
cagctcgtgaactatctgtaacaattcagttcttttcagtgtcattcggttcgtttttttttagtacttttataaacaactctgacattcaatttggatt |
1892484 |
T |
|
| Q |
107 |
ggttttggaagcaatttgaaacagtttggttcagaaagaatcagtaaggttataaaaagtatagttcannnnnnnnaacgtcgatcatgtttggtttgaa |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1892483 |
ggttttggaagcaatttgaaacagtttggttcagaaagaatcagtaaggttataaaaagtatagttcattttttttaacgtcgatcatgtttggtttgaa |
1892384 |
T |
|
| Q |
207 |
atcacataataggtgcatcgaacgtttatattagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1892383 |
atcacataataggtgcatcgaacgtttatattagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattt |
1892284 |
T |
|
| Q |
307 |
tcctcgtagttacatgcaatgatcacttacattttctacatgtcaatgtagtatttaatgtccatgactctttcagtgtttcatatgtttccgaacttca |
406 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1892283 |
tcctcgtagttacattcaatgatcacttacattttctacatgtcagtgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttca |
1892184 |
T |
|
| Q |
407 |
attcttaaagtataacgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgcc |
506 |
Q |
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| T |
1892183 |
attcttaaagtataacgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgcc |
1892084 |
T |
|
| Q |
507 |
accaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacggtcctttgtagaaagtcatcaca |
606 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1892083 |
accaatcgcccaacttgaatccactgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcaca |
1891984 |
T |
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| Q |
607 |
aaagcacgtgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatccttaattgcaatgataacaaga |
706 |
Q |
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| T |
1891983 |
aaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaaga |
1891884 |
T |
|
| Q |
707 |
aaac-aataattgggctataaactaacatgttcatatagaagttaatcaaatcactgcatgaaataac |
773 |
Q |
| |
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|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1891883 |
aaacaaataagtggactataaactaacatgttcatatagaagttaatcaaatcactgcatgaaataac |
1891816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 485 - 731
Target Start/End: Complemental strand, 1903035 - 1902788
Alignment:
| Q |
485 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacgg |
584 |
Q |
| |
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|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1903035 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1902936 |
T |
|
| Q |
585 |
tcctttgtagaaagtcatcacaaaagcacgtgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatc |
684 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1902935 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatc |
1902836 |
T |
|
| Q |
685 |
cttaattgcaatgataacaagaaaac-aataattgggctataaactaa |
731 |
Q |
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|||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
1902835 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1902788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 485 - 731
Target Start/End: Complemental strand, 1907268 - 1907021
Alignment:
| Q |
485 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacgg |
584 |
Q |
| |
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|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1907268 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1907169 |
T |
|
| Q |
585 |
tcctttgtagaaagtcatcacaaaagcacgtgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatc |
684 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1907168 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatc |
1907069 |
T |
|
| Q |
685 |
cttaattgcaatgataacaagaaaac-aataattgggctataaactaa |
731 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
1907068 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1907021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 418 - 712
Target Start/End: Complemental strand, 1912994 - 1912700
Alignment:
| Q |
418 |
ataacgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgccc |
517 |
Q |
| |
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||||| ||| ||||||||||||||| ||| |||||||| |||||||| | ||| || | |||||| |||||||||| |||||||| ||| |||| |||| |
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| T |
1912994 |
ataacatctatcattttgcataatagtaaccctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggccc |
1912895 |
T |
|
| Q |
518 |
aacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacgtgc |
617 |
Q |
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||||||||||| | | | |||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||| ||| |
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| T |
1912894 |
aacttgaatccacagacttgagaaagtcaattggttgatgaagtgatgaggaattcatgatggattgtcctttgtagaaagtcaacacaaaagcacctgc |
1912795 |
T |
|
| Q |
618 |
tattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatccttaattgcaatgataacaagaaaacaa |
712 |
Q |
| |
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| T |
1912794 |
tattgatattatgcttccaattaccttagcattactgcttctactctttgcagctaacttttccattcttaattgcaatgataacaggaaaacaa |
1912700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 490 - 701
Target Start/End: Complemental strand, 1879745 - 1879534
Alignment:
| Q |
490 |
attgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacggtcctt |
589 |
Q |
| |
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|||||||| ||||||||| ||| ||||||||||||||| ||| | |||||||| || |||||||||||||| | | ||||||||||| || ||||||| |
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|
| T |
1879745 |
attgttagaagaatgccagcaaaagcccaacttgaatcctctgacttgagaaagtcaactggttgatgaagtaaagatgaattcatgatggatggtcctt |
1879646 |
T |
|
| Q |
590 |
tgtagaaagtcatcacaaaagcacgtgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatccttaa |
689 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||| ||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
1879645 |
tgtagaaagtcaacacaaaagcacctgctattgagattatgcttccaattaccttagcattactacttctactctttgcagctaacttttccatccttaa |
1879546 |
T |
|
| Q |
690 |
ttgcaatgataa |
701 |
Q |
| |
|
|||||||||||| |
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| T |
1879545 |
ttgcaatgataa |
1879534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 515 - 701
Target Start/End: Complemental strand, 1897512 - 1897326
Alignment:
| Q |
515 |
cccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacg |
614 |
Q |
| |
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||||||||||||| ||| | ||||||||||| || |||||||||||||| |||||||||| | ||||||||||||||||| | ||||||||||| |
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| T |
1897512 |
cccaacttgaatctactgacttgagaaagccaattgattgatgaagtgatgagaaattcatgatgggtggtcctttgtagaaagttaacacaaaagcacc |
1897413 |
T |
|
| Q |
615 |
tgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatccttaattgcaatgataa |
701 |
Q |
| |
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||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1897412 |
tgctattgatattatgcttcccattaccttggcattactacttctactctttgcagctaacttttccatccttaattgcaatgataa |
1897326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 487 - 701
Target Start/End: Complemental strand, 1886336 - 1886122
Alignment:
| Q |
487 |
tcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacggtc |
586 |
Q |
| |
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|||| |||||| ||||||||| |||| ||||||||||||| ||| | ||||||||||| |||||||||||| |||| |||| |||||| || |||| |
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| T |
1886336 |
tcaactgttagaagaatgccagcaatgacccaacttgaatcaactgacttgagaaagccaattggttgatgaagagatgaggaatgcatgatggatggtc |
1886237 |
T |
|
| Q |
587 |
ctttgtagaaagtcatcacaaaagcacgtgctattgatattatgcttcctactacctttgcattgctacttctactctttgcggctaacttttccatcct |
686 |
Q |
| |
|
||||||| ||||||| ||||||||| | | ||||||| |||||||| || | || ||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
1886236 |
ctttgtaaaaagtcaacacaaaagctcctactattgagattatgctccccagtatcttagcattactacttctactctttgcagctaacttttccatcct |
1886137 |
T |
|
| Q |
687 |
taattgcaatgataa |
701 |
Q |
| |
|
||||| |||| |||| |
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|
| T |
1886136 |
taattacaattataa |
1886122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 536 - 628
Target Start/End: Original strand, 27039545 - 27039637
Alignment:
| Q |
536 |
tgagaaagccagctggttgatgaagtgatgtagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacgtgctattgatatta |
628 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
27039545 |
tgagaaagccaattggttgatgaagtgatgaggaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattgagatta |
27039637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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