View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232-Insertion-4 (Length: 696)

Name: NF2232-Insertion-4
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232-Insertion-4
NF2232-Insertion-4
[»] chr1 (29 HSPs)
chr1 (8-369)||(33101264-33101629)
chr1 (536-643)||(33100992-33101099)
chr1 (8-186)||(26977709-26977887)
chr1 (8-136)||(22414744-22414872)
chr1 (8-136)||(52565549-52565677)
chr1 (39-152)||(16050394-16050507)
chr1 (11-142)||(34273059-34273190)
chr1 (42-120)||(5671773-5671851)
chr1 (29-119)||(12177376-12177466)
chr1 (8-132)||(16030364-16030488)
chr1 (635-696)||(33100746-33100807)
chr1 (8-120)||(5459719-5459830)
chr1 (9-117)||(25408066-25408174)
chr1 (8-140)||(23728810-23728941)
chr1 (8-109)||(14255051-14255152)
chr1 (21-136)||(2140942-2141053)
chr1 (29-86)||(3590817-3590874)
chr1 (8-84)||(48637519-48637596)
chr1 (12-88)||(4601529-4601605)
chr1 (45-117)||(1659802-1659874)
chr1 (8-119)||(23280273-23280382)
chr1 (39-113)||(16299591-16299665)
chr1 (8-136)||(18246112-18246239)
chr1 (8-104)||(43344469-43344564)
chr1 (29-84)||(21098891-21098946)
chr1 (8-82)||(21682638-21682712)
chr1 (82-131)||(12032251-12032300)
chr1 (33-70)||(30732511-30732548)
chr1 (311-367)||(22415046-22415102)
[»] chr2 (22 HSPs)
chr2 (10-166)||(3586334-3586490)
chr2 (12-175)||(12168945-12169109)
chr2 (8-136)||(45714964-45715092)
chr2 (8-136)||(36267467-36267595)
chr2 (29-136)||(27846513-27846620)
chr2 (11-136)||(15825126-15825251)
chr2 (29-136)||(24499779-24499886)
chr2 (29-120)||(12127673-12127764)
chr2 (29-140)||(20120337-20120448)
chr2 (8-302)||(45257981-45258274)
chr2 (12-123)||(24755441-24755552)
chr2 (12-141)||(19919055-19919184)
chr2 (42-117)||(18770317-18770392)
chr2 (12-136)||(10923159-10923283)
chr2 (27-117)||(18135859-18135949)
chr2 (30-136)||(29711009-29711113)
chr2 (9-130)||(36022431-36022551)
chr2 (29-86)||(24157350-24157407)
chr2 (20-70)||(12634827-12634877)
chr2 (47-117)||(19050448-19050518)
chr2 (39-117)||(29137901-29137979)
chr2 (43-136)||(15390579-15390672)
[»] chr4 (22 HSPs)
chr4 (8-136)||(12683754-12683882)
chr4 (30-136)||(47253268-47253374)
chr4 (8-186)||(29157071-29157249)
chr4 (10-180)||(19643673-19643843)
chr4 (8-117)||(15742166-15742275)
chr4 (29-138)||(19809691-19809800)
chr4 (33-136)||(15514555-15514658)
chr4 (29-239)||(2674466-2674671)
chr4 (29-186)||(5518530-5518687)
chr4 (24-85)||(13171064-13171125)
chr4 (22-116)||(14602029-14602123)
chr4 (8-93)||(3981919-3982002)
chr4 (10-120)||(14003074-14003184)
chr4 (39-86)||(16012515-16012562)
chr4 (40-86)||(12415437-12415483)
chr4 (316-366)||(12684061-12684111)
chr4 (16-86)||(17110675-17110745)
chr4 (29-86)||(19563952-19564009)
chr4 (99-136)||(40979065-40979102)
chr4 (33-70)||(42479541-42479578)
chr4 (306-367)||(47253543-47253604)
chr4 (30-82)||(25066135-25066187)
[»] chr7 (25 HSPs)
chr7 (29-188)||(26762853-26763012)
chr7 (16-120)||(7486522-7486626)
chr7 (8-206)||(5863156-5863354)
chr7 (8-136)||(12644754-12644883)
chr7 (29-136)||(9135355-9135462)
chr7 (8-186)||(13292067-13292245)
chr7 (29-131)||(9867938-9868040)
chr7 (39-120)||(21161241-21161322)
chr7 (8-147)||(29373415-29373554)
chr7 (8-120)||(39879356-39879468)
chr7 (9-117)||(16987105-16987213)
chr7 (30-117)||(10287609-10287696)
chr7 (29-86)||(5925519-5925576)
chr7 (29-86)||(18773971-18774028)
chr7 (41-117)||(5929024-5929100)
chr7 (39-117)||(34854243-34854321)
chr7 (29-86)||(1979052-1979109)
chr7 (29-70)||(16363424-16363465)
chr7 (43-88)||(43172069-43172114)
chr7 (33-93)||(9573463-9573523)
chr7 (8-67)||(25173869-25173928)
chr7 (41-70)||(27803370-27803399)
chr7 (29-69)||(2226633-2226673)
chr7 (30-70)||(16363555-16363595)
chr7 (327-367)||(29373733-29373773)
[»] scaffold0505 (1 HSPs)
scaffold0505 (8-157)||(7854-8003)
[»] chr3 (26 HSPs)
chr3 (42-239)||(28723665-28723862)
chr3 (42-140)||(17143739-17143837)
chr3 (11-188)||(2311776-2311953)
chr3 (42-187)||(30606931-30607076)
chr3 (8-152)||(8122893-8123036)
chr3 (29-152)||(9801062-9801184)
chr3 (10-136)||(431310-431436)
chr3 (29-136)||(21342281-21342388)
chr3 (42-188)||(16704405-16704551)
chr3 (44-141)||(28715477-28715569)
chr3 (10-117)||(1770796-1770903)
chr3 (29-136)||(12516175-12516282)
chr3 (28-133)||(6109650-6109755)
chr3 (8-88)||(12108388-12108468)
chr3 (8-136)||(14860093-14860221)
chr3 (10-136)||(17485618-17485744)
chr3 (8-86)||(21649382-21649460)
chr3 (14-120)||(13085083-13085189)
chr3 (30-117)||(12251979-12252066)
chr3 (29-70)||(9007836-9007877)
chr3 (51-120)||(13932956-13933025)
chr3 (39-69)||(10896103-10896133)
chr3 (29-136)||(20622396-20622505)
chr3 (48-117)||(12731574-12731643)
chr3 (25-86)||(17396721-17396782)
chr3 (29-70)||(26620469-26620510)
[»] chr8 (21 HSPs)
chr8 (8-140)||(15058004-15058136)
chr8 (8-152)||(17927682-17927826)
chr8 (39-136)||(30477641-30477738)
chr8 (11-188)||(26916840-26917017)
chr8 (29-131)||(3459482-3459585)
chr8 (29-136)||(13754748-13754855)
chr8 (47-186)||(21416746-21416885)
chr8 (9-136)||(24507427-24507554)
chr8 (46-136)||(6928084-6928174)
chr8 (30-120)||(18322934-18323024)
chr8 (39-166)||(5859815-5859942)
chr8 (29-164)||(17698251-17698386)
chr8 (8-104)||(23269215-23269311)
chr8 (29-119)||(13764979-13765069)
chr8 (53-125)||(24070866-24070938)
chr8 (29-136)||(24576577-24576684)
chr8 (11-93)||(1909745-1909827)
chr8 (8-88)||(17319661-17319744)
chr8 (111-188)||(23269306-23269383)
chr8 (30-86)||(14666883-14666939)
chr8 (39-183)||(11776190-11776326)
[»] chr5 (23 HSPs)
chr5 (42-141)||(22903096-22903195)
chr5 (8-136)||(8938879-8939008)
chr5 (45-166)||(26994570-26994691)
chr5 (11-136)||(27083232-27083356)
chr5 (29-136)||(22865751-22865858)
chr5 (11-117)||(25537377-25537483)
chr5 (45-136)||(20025289-20025380)
chr5 (29-120)||(25333725-25333816)
chr5 (29-136)||(32418480-32418587)
chr5 (11-93)||(26163607-26163689)
chr5 (29-82)||(26348127-26348180)
chr5 (53-117)||(24647302-24647366)
chr5 (30-113)||(19993182-19993265)
chr5 (41-140)||(25828978-25829077)
chr5 (95-138)||(34493569-34493612)
chr5 (39-86)||(18799780-18799827)
chr5 (8-70)||(7449761-7449823)
chr5 (8-69)||(227739-227800)
chr5 (8-93)||(16621177-16621262)
chr5 (33-74)||(30808665-30808706)
chr5 (29-62)||(30827060-30827093)
chr5 (18-86)||(18803897-18803965)
chr5 (10-86)||(24546318-24546393)
[»] scaffold0023 (1 HSPs)
scaffold0023 (30-165)||(95775-95910)
[»] scaffold0103 (1 HSPs)
scaffold0103 (7-136)||(40764-40893)
[»] chr6 (44 HSPs)
chr6 (11-187)||(20148289-20148463)
chr6 (11-187)||(22184365-22184539)
chr6 (9-136)||(19305434-19305561)
chr6 (7-188)||(30680960-30681141)
chr6 (23-131)||(689856-689964)
chr6 (29-152)||(18147296-18147419)
chr6 (12-136)||(34187272-34187395)
chr6 (31-136)||(15480335-15480440)
chr6 (42-136)||(3404856-3404950)
chr6 (34-136)||(19730585-19730687)
chr6 (11-136)||(9292014-9292138)
chr6 (30-186)||(22572036-22572191)
chr6 (29-136)||(33596851-33596958)
chr6 (11-117)||(31295548-31295654)
chr6 (54-136)||(34572988-34573070)
chr6 (11-136)||(9277295-9277419)
chr6 (40-136)||(9403173-9403269)
chr6 (8-136)||(12449577-12449705)
chr6 (48-120)||(14268440-14268512)
chr6 (29-105)||(25008415-25008491)
chr6 (41-136)||(4251038-4251133)
chr6 (29-120)||(14080474-14080564)
chr6 (33-86)||(16343573-16343626)
chr6 (64-140)||(16130993-16131069)
chr6 (11-115)||(19331695-19331799)
chr6 (8-116)||(22497312-22497420)
chr6 (12-84)||(31125242-31125314)
chr6 (45-136)||(10115679-10115770)
chr6 (21-136)||(34064177-34064292)
chr6 (29-136)||(10926888-10926995)
chr6 (29-116)||(12424328-12424415)
chr6 (66-140)||(11087529-11087603)
chr6 (48-90)||(13823417-13823459)
chr6 (42-120)||(17380100-17380178)
chr6 (8-117)||(12488009-12488118)
chr6 (8-117)||(27860961-27861070)
chr6 (73-136)||(31423831-31423894)
chr6 (29-70)||(11714162-11714203)
chr6 (95-136)||(12203632-12203673)
chr6 (306-355)||(12473428-12473477)
chr6 (67-135)||(18566685-18566753)
chr6 (72-136)||(19277070-19277134)
chr6 (49-117)||(23768203-23768271)
chr6 (27-67)||(33586279-33586319)
[»] scaffold0205 (2 HSPs)
scaffold0205 (30-162)||(10883-11015)
scaffold0205 (29-186)||(22876-23033)
[»] scaffold0360 (1 HSPs)
scaffold0360 (29-136)||(13912-14019)
[»] scaffold0140 (1 HSPs)
scaffold0140 (30-136)||(6289-6395)
[»] scaffold0291 (2 HSPs)
scaffold0291 (10-136)||(8571-8696)
scaffold0291 (45-136)||(15424-15515)
[»] scaffold0054 (1 HSPs)
scaffold0054 (38-166)||(68766-68892)
[»] scaffold0174 (1 HSPs)
scaffold0174 (8-120)||(29288-29398)
[»] scaffold0294 (1 HSPs)
scaffold0294 (47-166)||(206-326)
[»] scaffold0002 (2 HSPs)
scaffold0002 (8-136)||(379685-379813)
scaffold0002 (15-136)||(121005-121126)
[»] scaffold0057 (1 HSPs)
scaffold0057 (30-136)||(73796-73902)
[»] scaffold0101 (1 HSPs)
scaffold0101 (8-88)||(10760-10840)
[»] scaffold0074 (1 HSPs)
scaffold0074 (29-113)||(35243-35327)
[»] scaffold0005 (1 HSPs)
scaffold0005 (22-116)||(215255-215349)
[»] scaffold0380 (1 HSPs)
scaffold0380 (8-140)||(6850-6982)
[»] scaffold0518 (1 HSPs)
scaffold0518 (31-83)||(8962-9014)
[»] scaffold0022 (1 HSPs)
scaffold0022 (30-70)||(69284-69324)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-84)||(4470-4536)
[»] scaffold0263 (1 HSPs)
scaffold0263 (48-117)||(20510-20579)
[»] scaffold0092 (1 HSPs)
scaffold0092 (34-136)||(21612-21714)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 33101629 - 33101264
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33101629 gatgagtcttcgctgtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttg 33101530  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggttttacaacatgtgtttagggaa 207  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33101529 tgaaaagtgaaccgtaacttgagggtgaaacaatgtcacctttatgtagacgcgcgttgtggataaccatctctgggttttacaacatgtgtttagggaa 33101430  T
Q  208 cgattagtgggcacgagtagggtgatcctcgctcagaggtgtgcttgcatgcggtacaatgcactaaagttggcat----gctcctgcaggcacggggct 303  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||     
T  33101429 cgattagtgggcacgtgtagggtgatcctcactcagaggtgtgcttacatgcggtacaatgcactaaagttggcatgctagctcctgcaggcacggggcc 33101330  T
Q  304 tgaagacggtgcaagtttatactacgtgtcaatgtgggattggtcttgtgaccgatccagaacatc 369  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  33101329 tgaagacggtgcaagtttataccacgtgtcaatgtgggattggtcttgtgacagatctagaacatc 33101264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 536 - 643
Target Start/End: Complemental strand, 33101099 - 33100992
Alignment:
Q  536 gatatttactcaagatgaatatagaccggttgtttaacccgatgattcacgtgtattgtctcattatgagtttgtttggcaaagctaagcatgagcttat 635  Q
    |||||||  ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33101099 gatatttgttcaagatgaatatagaccggtggtttaacccaatgattcacgtgtattgtctcattatgagtttgtttggcaaagctaatcatgagcttat 33101000  T
Q  636 taaggata 643  Q
    ||||||||    
T  33100999 taaggata 33100992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 26977709 - 26977887
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||| |||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||| |||    
T  26977709 gatgaatctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattg 26977808  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    |||||| |||||| || |||||||||||| ||||   ||| |||| ||| |||||| || | |||||| |||| |||||    
T  26977809 tgaaaaatgaatcataccttgagggtgaagcaatttgacccttatataggcgcgcgatgggaataaccgtctctgggtt 26977887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 22414744 - 22414872
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||||| ||| ||| |||||||||  ||||||||||||||||||  ||||||||||| |||||| |||||| |||||||| |||||||||||||    
T  22414744 gatgagtctttgcggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttg 22414843  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||| || ||||||||||||    
T  22414844 tgaaaagtgaatcatatcttgagggtgaa 22414872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 52565549 - 52565677
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||| || ||| | ||| ||||||||| ||||| |||||||||||||  ||||||||||| |||| |||||||| ||| |||||| |||||||||||    
T  52565549 gatgagttttcgtgatggaacgaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttg 52565648  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||| |||||||||||||||    
T  52565649 tgaaaagtgaatcataacttgagggtgaa 52565677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 16050394 - 16050507
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaac 138  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||| |||| ||||||||||| |||||||||||| | || ||||||| |||| |    
T  16050394 tgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtgaaaagtgaaccataccttgaggatgaagc 16050493  T
Q  139 aatgccacctttat 152  Q
    ||||||||| ||||    
T  16050494 aatgccacccttat 16050507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 34273059 - 34273190
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||||| ||| | | ||||||| | |||| ||||||||||||||||| ||||||||| |||| |||||||||||| |||| |||||||||||||||     
T  34273059 gagtctttgcggtgggacgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgt 34273158  T
Q  111 aaagtgaatcgtaacttgagggtgaaacaatg 142  Q
    ||||||| || || |||||||||||| |||||    
T  34273159 aaagtgactcataccttgagggtgaagcaatg 34273190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 5671773 - 5671851
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  5671773 aggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatc 5671851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 12177376 - 12177466
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaat 119  Q
    ||||||||| | || ||||||||||||||| || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  12177376 gaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 12177466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 16030364 - 16030488
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||||||   ||| ||||||||||||  ||||||||||||| || || || ||||||||| |||||||||||||  || |||| |||||||||||||    
T  16030364 gatgagtcttcacggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttg 16030463  T
Q  108 tgaaaagtgaatcgtaacttgaggg 132  Q
    ||||||||||||| || ||||||||    
T  16030464 tgaaaagtgaatcataccttgaggg 16030488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 635 - 696
Target Start/End: Complemental strand, 33100807 - 33100746
Alignment:
Q  635 ttaaggataacttatcttgtaaaaactaactcatatcatctgaatataattgtttgataaca 696  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  33100807 ttaaggataacttatcttgtaaaaactaactcatattatctgaatatagttgtttgataaca 33100746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 5459830 - 5459719
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| ||||| | | |||||||||||||||| ||||||||||||||||| ||||  | |||| || ||||||||| |||| |||||||||||||    
T  5459830 gatgagtcttcgtggtgggacgaaaggtgcatgcaggtacgttagcactccaacgttcaaaacagtaacgg-actgagaaagagtgtgtagaaagtgttg 5459732  T
Q  108 tgaaaagtgaatc 120  Q
    || ||||||||||    
T  5459731 tgtaaagtgaatc 5459719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 25408066 - 25408174
Alignment:
Q  9 atgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgt 108  Q
    |||||||| || ||| ||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| | | |||| |||  |||||||||    
T  25408066 atgagtctctgcggtggaatgaaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgt 25408165  T
Q  109 gaaaagtga 117  Q
    |||||||||    
T  25408166 gaaaagtga 25408174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 23728941 - 23728810
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| | ||| ||| |||||||| ||||||||||||||||| |   |||||||||||  |||||||| ||||||| |||| |||  ||||||||    
T  23728941 gatgagtcttcgcggt-gaacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttg 23728843  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    ||||||||||   ||| ||||||||||||||||    
T  23728842 tgaaaagtgatgtgtaccttgagggtgaaacaa 23728810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 14255152 - 14255051
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| ||||| ||| ||| ||||| |||| ||||| |||||||||||||||||||||  ||||| |||||||||| |||| |||  ||||||||    
T  14255152 gatgagtcttcgtggtggaacgaagggtgcctgcaagcacgatagcactccaacgctcaagtcattaatgaaactgagaaagagtgtgtaagaagtgttg 14255053  T
Q  108 tg 109  Q
    ||    
T  14255052 tg 14255051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 2141053 - 2140942
Alignment:
Q  21 ggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||||||| ||||| ||    | ||| | || ||||||||||||||| |||||||| |    
T  2141053 ggtagaacgaaaggtgtatgcaggcaacttagcactccaacgctcaagtcagtaattga----aaaaagaatgtgtagaaagtgttgtggaaagtgaacc 2140958  T
Q  121 gtaacttgagggtgaa 136  Q
     || ||||||||||||    
T  2140957 ataccttgagggtgaa 2140942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 3590817 - 3590874
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||    
T  3590817 gaaaggtgcatgcaggcaccttagcactccgacgatcaagtcagtaatggaactgaga 3590874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 48637519 - 48637596
Alignment:
Q  8 gatgagtctt-tgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactga 84  Q
    |||||||||| || ||||||| ||||||||| ||||||||||| |||||||  ||||||||||| |||||||||||||    
T  48637519 gatgagtcttctgcggtagaacgaaaggtgcctgcaggcacgtcagcactctgacgctcaagtcagtaatggaactga 48637596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 4601605 - 4601529
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaa 88  Q
    |||||| | ||| ||| ||||||||  |||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  4601605 agtcttcgcggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaa 4601529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 1659874 - 1659802
Alignment:
Q  45 cacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||| ||||||||||||||||||  ||||||| |||||||| | || |||  ||||||||||||||||||    
T  1659874 cacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtga 1659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 23280382 - 23280273
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||| || ||||| | ||| ||||||||| ||||| || |||| ||||| ||| |||||||| ||||||||||||||  |||||| ||  | |||||||    
T  23280382 gatgaatccttgtgatggaacgaaaggtgcctgcagacatgttatcactcaaactctcaagtcagtaatggaactgag--aaagtgtgtgtatagtgttg 23280285  T
Q  108 tgaaaagtgaat 119  Q
    ||||||||||||    
T  23280284 tgaaaagtgaat 23280273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 16299665 - 16299591
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaa 113  Q
    |||| |||| |||||||||| ||| ||||||  |||||| |||||||||| ||||||||  ||||||||||||||    
T  16299665 tgcatgcacattagcactccgacgttcaagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaa 16299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 18246112 - 18246239
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| | ||| ||| ||||||||  || | |||||||| |||||||||||||||||  ||| | ||| ||||||| ||||  || |||||| ||    
T  18246112 gatgagtcttggcggtggaacgaaaggtgtctgtaagcacgttaacactccaacgctcaagtgagtattagaattgagaaagagtgtataaaaagtg-tg 18246210  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
     ||||||||| || || ||||||||||||    
T  18246211 agaaaagtgattcataccttgagggtgaa 18246239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 43344564 - 43344469
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtg 104  Q
    |||||||||||| ||| | ||||||||||  |||||  |||||||||||| |||||||||||| ||| || |||| ||||| |||| ||| ||||||    
T  43344564 gatgagtctttgcggtgggatgaaaggtgtctgcagaaacgttagcactcgaacgctcaagtcagtattgaaact-agaaagagtgtgtaaaaagtg 43344469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 21098946 - 21098891
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactga 84  Q
    ||||||||  ||||||||| |||||||||| ||| ||||||| |||||||||||||    
T  21098946 gaaaggtggctgcaggcacattagcactccgacgatcaagtcagtaatggaactga 21098891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 21682712 - 21682638
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaact 82  Q
    ||||||||| ||  || ||| ||||||||| |  ||| ||||| ||||||||||||||||||| |||||||||||    
T  21682712 gatgagtctctgctgtggaacgaaaggtgcctataggtacgtttgcactccaacgctcaagtcagtaatggaact 21682638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 12032300 - 12032251
Alignment:
Q  82 tgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagg 131  Q
    ||||||| |||| ||||||||||||||| ||| |||||| ||||||||||    
T  12032300 tgagaaagagtgtgtagaaagtgttgtgtaaaatgaatcataacttgagg 12032251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 30732511 - 30732548
Alignment:
Q  33 ggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  30732511 ggtgcctgcaggcacgttagcactccaatgctcaagtc 30732548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 22415046 - 22415102
Alignment:
Q  311 ggtgcaagtttatactacgtgtcaatgtgggattggtcttgtgaccgatccagaaca 367  Q
    |||| |||||||| | |||||||||  || |||||||||| ||||||||||||||||    
T  22415046 ggtgtaagtttatgccacgtgtcaacatgtgattggtcttttgaccgatccagaaca 22415102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 3586334 - 3586490
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||||| ||| ||||||||||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3586334 tgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtg 3586433  T
Q  110 aaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttg 166  Q
    ||||||||||| || |||||||||||| |||   |||| |||| ||| |||||||||    
T  3586434 aaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcgcgcgttg 3586490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 12168945 - 12169109
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgct-caagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    |||||||| ||| ||| ||||||||  ||||||||| ||| |||||||||||| |||||| ||||||||||| ||||| |||| ||||||||||||||||    
T  12168945 agtctttgcggtggaacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtga 12169044  T
Q  111 aaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataacc 175  Q
    |||||||||  || |||||||||||| |||||||||| |||  ||| ||||||||| | ||||||    
T  12169045 aaagtgaattataccttgagggtgaagcaatgccacccttaaataggcgcgcgttgagaataacc 12169109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 45714964 - 45715092
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||||||  |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||| ||||||| |    
T  45714964 gatgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtgg 45715063  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||| |||||| || ||||| ||||||    
T  45715064 tgaaaattgaatcataccttgaaggtgaa 45715092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 36267467 - 36267595
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| |  || ||||||||||||| |||| ||| |||| |||||||||||||||||| |||||| |||||||||| |||| |||||||| ||||    
T  36267467 gatgagtcttcgcagtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttg 36267566  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||| || ||||||||||||    
T  36267567 tgaaaagtgaatcataccttgagggtgaa 36267595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 27846620 - 27846513
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||| |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||  ||||||||||||||| ||||||||| ||| ||||    
T  27846620 gaaaagtgcctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaattgtaccttg 27846521  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  27846520 agggtgaa 27846513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 15825126 - 15825251
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||||||||| ||| |||| |||  ||||||||||||||||||   ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  15825126 gagtctttgtggtggaacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtga 15825225  T
Q  111 aaagtgaatcgtaacttgagggtgaa 136  Q
    ||||| |   ||| ||||||||||||    
T  15825226 aaagtcatgtgtaccttgagggtgaa 15825251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 24499779 - 24499886
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| |  ||| ||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||| |||||||||||||||||| || |||     
T  24499779 gaaaggtgcctctaggaacgttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcatacctta 24499878  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  24499879 agggtgaa 24499886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 12127764 - 12127673
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||| |||| ||||   ||| ||||||||||||||||||||||||||    
T  12127764 gaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtgaatc 12127673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 20120337 - 20120448
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||  |||||||||||||||||||| || |||||||| |||||| |||||||||| |||| || ||||||| ||||| ||||||||| || ||||    
T  20120337 gaaaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatcataccttg 20120436  T
Q  129 agggtgaaacaa 140  Q
    ||||| ||||||    
T  20120437 agggtaaaacaa 20120448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 45258274 - 45257981
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| | ||| ||| ||||| ||  ||||||||||||| |||||||| ||||||||  |||||| |||| ||||| | || || ||||||||||    
T  45258274 gatgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttg 45258175  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggttttacaacatgtgtttagggaa 207  Q
    ||||||||||||| || |||||||||||| ||| | |||| |||| |||   | || ||  ||||||| |||||| ||||| |  | |||| |||||||     
T  45258174 tgaaaagtgaatcataccttgagggtgaagcaaagtcacccttatataggtcctcg-tgacgataaccgtctccgagttttgcggcgtgtgattagggag 45258076  T
Q  208 cgattagtgggcacgagtagggtgatcctcgctcagaggtgtgcttgcatgcggtacaatgcactaaagttggcatgctcctgcaggcacggggc 302  Q
    || |||| || |||  | |||||||||||||| | |||| ||||||| ||| | | |  |||||||||||| ||||| |||| || || ||||||    
T  45258075 cggttagaggacacatgcagggtgatcctcgcacggaggcgtgcttggatgtgatgcggtgcactaaagtttgcatgttccttcaagcgcggggc 45257981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 24755441 - 24755552
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaa 111  Q
    |||||| ||| | ||| ||||| ||||| || ||||||||| |||||||| |||||||| || ||||||||  ||||||||| ||||||| |||||||||    
T  24755441 agtcttcgtgttggaacgaaagttgcatacaagcacgttagtactccaaccctcaagtcagtgatggaactctgaaaaagtgtgtagaaattgttgtgaa 24755540  T
Q  112 aagtgaatcgta 123  Q
    ||||||||||||    
T  24755541 aagtgaatcgta 24755552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 19919184 - 19919055
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaa 111  Q
    |||||| ||||| ||| ||||||||| |||||| || |||| |||| |||||  |||||  |||||||| ||||||| |||  |||||||||||||||||    
T  19919184 agtcttcgtggtggaacgaaaggtgcctgcaggaacattagaactctaacgccaaagtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaa 19919085  T
Q  112 aagtgaatcgtaacttgagggtgaaacaat 141  Q
    ||||||||| || ||||||| |||| ||||    
T  19919084 aagtgaatcataccttgaggatgaagcaat 19919055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 18770317 - 18770392
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||||||||||||  ||||||||||| |||||| || ||||||| |||| |||||||||||||||||||||||    
T  18770317 aggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 10923283 - 10923159
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaa 111  Q
    |||||| | ||| ||| |||||||| ||| |||||||||| |||||| || |||||||| || |||||||| | ||| |||| |||||||||| ||||||    
T  10923283 agtcttcgcggtggaacgaaaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaa 10923184  T
Q  112 aagtgaatcgtaacttgagggtgaa 136  Q
    |||||||  ||  ||||||||||||    
T  10923183 aagtgaagtgtgccttgagggtgaa 10923159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 18135859 - 18135949
Alignment:
Q  27 atgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||||||| || ||||||||||| ||||  ||||||||||  ||||||||||||||||| |||| |||  ||||||||| ||||||||    
T  18135859 atgaaaggtgcctgtaggcacgttagtactctgacgctcaagttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtga 18135949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 29711009 - 29711113
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    ||||||| ||||| |||||||||||||||||||||||||||  |||||||| |  |||| || | |||  ||||||||||||||||||   ||| |||||    
T  29711009 aaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaatt--gaaagagagtgtacgaagtgttgtgaaaagtgatgtgtaccttga 29711106  T
Q  130 gggtgaa 136  Q
    |||||||    
T  29711107 gggtgaa 29711113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 36022431 - 36022551
Alignment:
Q  9 atgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgt 108  Q
    |||||||||||| |||||| |||||||  ||| |||||||||| ||||| |||||||||||| ||| ||  ||||||||| |||  ||| |||||| ||     
T  36022431 atgagtctttgtagtagaacgaaaggtatatgtaggcacgttaacactctaacgctcaagtcagtattgagactgagaaagagtttgtaaaaagtg-tga 36022529  T
Q  109 gaaaagtgaatcgtaacttgag 130  Q
    | |||||||||| || ||||||    
T  36022530 gcaaagtgaatcatatcttgag 36022551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 24157407 - 24157350
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||| | || ||||||||||||||  ||||||||||| |||||||||||||||    
T  24157407 gaaaggtgcctacatgcacgttagcactctgacgctcaagtcagtaatggaactgaga 24157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 12634827 - 12634877
Alignment:
Q  20 tggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    |||| ||| ||||||||||||||||||||||| ||||||||| || |||||    
T  12634827 tggtggaacgaaaggtgcatgcaggcacgttaacactccaactcttaagtc 12634877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 19050518 - 19050448
Alignment:
Q  47 cgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    |||||||||||  ||||||||||| ||||| ||||| ||||| || | |||  ||||||||||||||||||    
T  19050518 cgttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtga 19050448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 29137901 - 29137979
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    |||||| |||||||||| || |||||||||||  ||||| |||||||||| |||| |||  || ||||||| |||||||    
T  29137901 tgcaggtacgttagcacaccgacgctcaagtcattaatgcaactgagaaagagtgtgtaagaaatgttgtggaaagtga 29137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 15390672 - 15390579
Alignment:
Q  43 ggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||||   ||||||||||  || |||||||| | ||| |||| |||  ||||||||||||||||||   ||| ||||||||||||    
T  15390672 ggcacgttagcactttgacgctcaagtaagtgatggaactaataaacagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaa 15390579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 12683754 - 12683882
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||| |||| |||||||||||||    
T  12683754 gatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttg 12683853  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||| || ||| ||||||||    
T  12683854 tgaaaagtgaatcataccttaagggtgaa 12683882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 47253268 - 47253374
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||| || |||||    
T  47253268 aaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaatcataccttga 47253367  T
Q  130 gggtgaa 136  Q
    |||||||    
T  47253368 gggtgaa 47253374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 29157071 - 29157249
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||| || ||| ||| ||| ||||||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||| |||| ||||||||    
T  29157071 gatgaatccttgcggtggaacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttg 29157170  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    || |||||||| | || ||||| ||||||  ||   |||| |||| ||| ||||||| | |||||||| |||| |||||    
T  29157171 tgtaaagtgaaccataccttgatggtgaagtaagttcacccttatataggcgcgcgtagaggataaccgtctctgggtt 29157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 19643673 - 19643843
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||| ||| | ||| | |||||||  ||||| |||||| || ||| ||||| ||||| ||||||||||||||||| |||| ||||||||| |||||    
T  19643673 tgagtcttcgtgatggaacggaaggtgcccgcaggtacgttaccaatccgacgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtg 19643772  T
Q  110 aaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctc 180  Q
    ||||||||||| || ||||||||||||||||   |||| |||| ||| || |||||| |||||||| ||||    
T  19643773 aaaagtgaatcataccttgagggtgaaacaagttcacccttatataggcgtgcgttgaggataaccgtctc 19643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 15742275 - 15742166
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| ||||| ||  ||||||||| ||| |||||||||||||||  ||||||||||| |||||||||||||||||||||| |||  ||||||||    
T  15742275 gatgagtcttcgtggtggagcgaaaggtgcctgctggcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttg 15742176  T
Q  108 tgaaaagtga 117  Q
    ||||||||||    
T  15742175 tgaaaagtga 15742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 138
Target Start/End: Original strand, 19809691 - 19809800
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||| | ||||| || ||||||||||||||||||||||| |||||| |||| ||||| |||| |||||||||||||||||||||||||  || ||||    
T  19809691 gaaaggttcctgcagacatgttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttg 19809790  T
Q  129 agggtgaaac 138  Q
    ||||||||||    
T  19809791 agggtgaaac 19809800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 15514658 - 15514555
Alignment:
Q  33 ggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgaggg 132  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||  |||||||||| |||||||   ||| ||||||||    
T  15514658 ggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgaggg 15514559  T
Q  133 tgaa 136  Q
    ||||    
T  15514558 tgaa 15514555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 2674671 - 2674466
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||||| |||||| || |||||||||||||||| ||||||  ||||| ||||||||    ||| |||||||||||||||||||||||||| || ||||    
T  2674671 gaaaggtgtatgcagtcatgttagcactccaacgcacaagtcaataatgtaactgaga----gtgtgtagaaagtgttgtgaaaagtgaatcataccttg 2674576  T
Q  129 agggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggttttacaacatgtgtttagggaacgattagtgggcacgagtagg 228  Q
    ||| ||||  ||   |||| |||| ||  ||||||||| | |||||| ||||||| |||| |  | |||| |||||| ||  |||| || |||| |||||    
T  2674575 aggatgaagtaagttcacccttatataagcgcgcgttgagcataaccgtctccggattttgcggcgtgtgattaggg-acagttagaggacacgtgtagg 2674477  T
Q  229 gtgatcctcgc 239  Q
    |||||||||||    
T  2674476 gtgatcctcgc 2674466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 5518530 - 5518687
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||  ||||| |||||||||||| ||||||||||||| ||||| ||||||||| | | || |||  |||||||||| |||||||  |||| ||||    
T  5518530 gaaaggtgagtgcagacacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtgatgcgtaccttg 5518629  T
Q  129 agggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    |||||||| |||   |||| |||| ||| |||| |||| | |||||| ||||||||||    
T  5518630 agggtgaagcaagttcacccttatataggcgcgtgttgggcataaccgtctccgggtt 5518687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 13171064 - 13171125
Alignment:
Q  24 agaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgag 85  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13171064 agaacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgag 13171125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 14602123 - 14602029
Alignment:
Q  22 gtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtg 116  Q
    |||||| ||||| ||  |||||||||||||||| ||||||||||||||| |||||| |||||| | | |||| |||  |||||||||||||||||    
T  14602123 gtagaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 14602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 3981919 - 3982002
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtg 93  Q
    ||||||||||   ||| ||| |||||||||||||| |||||||||||||||||| ||||||||  |||||||||||| ||| ||||    
T  3981919 gatgagtcttcacggtggaacgaaaggtgcatgcatgcacgttagcactccaacactcaagtc--taatggaactgaaaaagagtg 3982002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 14003184 - 14003074
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||||| ||| ||| ||||||| | || ||  |||||||||||   ||||||||||| ||||||||||||||||| |||  || ||||||||| ||    
T  14003184 tgagtctttgcggtggaacgaaaggttcctgaagcaacgttagcactatgacgctcaagtcagtaatggaactgagaaagagtttgtggaaagtgttatg 14003085  T
Q  110 aaaagtgaatc 120  Q
    |||| ||||||    
T  14003084 aaaaatgaatc 14003074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 16012562 - 16012515
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  16012562 tgcaggcacgttaacactccgacgctcaagtcagtaatggaactgaga 16012515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 12415437 - 12415483
Alignment:
Q  40 gcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||    
T  12415437 gcaggcacgttagcactccaacgatcaagtaagtaatggaactgaga 12415483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 12684061 - 12684111
Alignment:
Q  316 aagtttatactacgtgtcaatgtgggattggtcttgtgaccgatccagaac 366  Q
    |||||||| | ||||||||| ||| |||||||||| |||||||||||||||    
T  12684061 aagtttatgccacgtgtcaacgtgtgattggtcttatgaccgatccagaac 12684111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 17110675 - 17110745
Alignment:
Q  16 tttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    |||| ||| ||| |||| |||| |||| ||||||||||||||| ||| ||||||| ||||||||| |||||    
T  17110675 tttgcggtggaacgaaatgtgcctgcaagcacgttagcactccgacgatcaagtcagtaatggaattgaga 17110745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 19563952 - 19564009
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||| |||||||||||||||||| | ||| ||||||| || ||| ||||||||    
T  19563952 gaaaggtgcctgcaggcacgttagcactgcgacgatcaagtcagttatgaaactgaga 19564009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 40979102 - 40979065
Alignment:
Q  99 aaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  40979102 aaagtgtggtgaaaagtgaatcgtatcttgagggtgaa 40979065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 42479578 - 42479541
Alignment:
Q  33 ggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  42479578 ggtgcatgcaagcacgttaacactccaacgctcaagtc 42479541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 47253543 - 47253604
Alignment:
Q  306 aagacggtgcaagtttatactacgtgtcaatgtgggattggtcttgtgaccgatccagaaca 367  Q
    ||| ||||||||||||  || ||||||||| ||||||||| |||| ||| ||||||||||||    
T  47253543 aaggcggtgcaagtttggaccacgtgtcaacgtgggattgttcttctgatcgatccagaaca 47253604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 25066135 - 25066187
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaact 82  Q
    ||||||||||||| | ||||||||||||  ||| ||||||| |||||||||||    
T  25066135 aaaggtgcatgcaagtacgttagcactctgacgatcaagtcagtaatggaact 25066187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 26763012 - 26762853
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||| |||||| | ||| |||| |||||||||||||||||||||||||| || ||||    
T  26763012 gaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatcataccttg 26762913  T
Q  129 agggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtttt 188  Q
    |||||||| ||| | ||||  ||| ||| |||| ||||| |||||||| |||||||||||    
T  26762912 agggtgaagcaaggacacccatatataggcgcgtgttgttgataaccacctccgggtttt 26762853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 7486522 - 7486626
Alignment:
Q  16 tttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagt 115  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | || |||||| ||||||||||||||    
T  7486522 tttgcggtggaatgaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagt 7486621  T
Q  116 gaatc 120  Q
    |||||    
T  7486622 gaatc 7486626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 5863156 - 5863354
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||||||   ||||||| ||||  ||| |||| |||||||||||||| |||||||||||| ||||| ||||||||||| |||| ||||||| |||||    
T  5863156 gatgagtcttcacggtagaacgaaatttgcgtgcaagcacgttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttg 5863255  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggttttacaacatgtgtttaggga 206  Q
    | ||||||||||| || |||||||||| | ||||| |||| || | ||| |||||||||   ||||||  |||||||||| ||  |||||| |||||||    
T  5863256 taaaaagtgaatcataccttgagggtggagcaatgtcacccttgtataggcgcgcgttggaaataaccgcctccgggtttcacggcatgtgattaggga 5863354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 12644754 - 12644883
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgtt- 106  Q
    ||||||||||   ||| ||| |||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||| || |||||||||     
T  12644754 gatgagtcttcacggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttg 12644853  T
Q  107 gtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||| |||  |||||||||||    
T  12644854 gtgaaaagtgaattgtacgttgagggtgaa 12644883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 9135462 - 9135355
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||||||||  |||||||||||||||| |||||||||||| ||||||||| ||||||| |||| ||| ||| |||||||||||||||||| || ||||    
T  9135462 gaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatcataccttg 9135363  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  9135362 agggtgaa 9135355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 13292245 - 13292067
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| ||||| ||| ||||||||  |||||| |||||||||||| |||||||||||| |||||| |||||| ||| |||| |||  ||||||||    
T  13292245 gatgagtcttcgtggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttg 13292146  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    ||||||||||   ||| |||||||||||| |||   |||| |||| ||| |||||||||   |||||| ||||||||||    
T  13292145 tgaaaagtgatgtgtaccttgagggtgaagcaagttcaccattatataggcgcgcgttggccataaccgtctccgggtt 13292067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 9868040 - 9867938
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||| || |||  |||||||||||||| ||||||||||| || ||||    
T  9868040 gaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtgaatcataccttg 9867941  T
Q  129 agg 131  Q
    |||    
T  9867940 agg 9867938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 21161241 - 21161322
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    |||||||||||||||||||||||||||||||| |||||||| || |||||  ||| ||||||||||||||||||||||||||    
T  21161241 tgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaagtgaatc 21161322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 29373415 - 29373554
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||| |||| |||  || |||||||||||||||||| ||||| ||||||| ||||||||| ||  || || ||||||| |||| ||||||| |||||    
T  29373415 gatgagtttttgcggtgaaacgaaaggtgcatgcaggcatgttaggactccaatgctcaagtcagttgtgtaattgagaaagagtgtgtagaaaatgttg 29373514  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacc 147  Q
    |||||| |||||| || |||||||||||| ||||| ||||    
T  29373515 tgaaaattgaatcataccttgagggtgaagcaatgtcacc 29373554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 39879356 - 39879468
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||| |||| ||||| ||| ||||||||| ||||| ||||||| ||||  |||||||||||| |||||| |||||||||| |||| ||| |||||||||    
T  39879356 gatgaatcttcgtggtggaacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttg 39879455  T
Q  108 tgaaaagtgaatc 120  Q
    | |||||||||||    
T  39879456 taaaaagtgaatc 39879468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 16987213 - 16987105
Alignment:
Q  9 atgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgt 108  Q
    ||||||||| | ||| ||| ||||||||||||| |||||||||||||||  || |||||| | ||||||||| ||||||| |||| |||  |||||||||    
T  16987213 atgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagtgtgtaagaagtgttgt 16987114  T
Q  109 gaaaagtga 117  Q
    |||||||||    
T  16987113 gaaaagtga 16987105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 10287696 - 10287609
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    |||||| | |||||||||||||||||   |||||||||||| |||||||| ||||||||||||| |||  ||||||||||||||||||    
T  10287696 aaaggttcctgcaggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaagtga 10287609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 5925576 - 5925519
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||  |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  5925576 gaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgaga 5925519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 18773971 - 18774028
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    |||||||||||||||||||||||||||| | ||| |||| || |||||||||||||||    
T  18773971 gaaaggtgcatgcaggcacgttagcacttcgacgatcaaatcagtaatggaactgaga 18774028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 5929100 - 5929024
Alignment:
Q  41 caggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||| | | || | |||  ||||||||||||||||||    
T  5929100 caggcacattagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtga 5929024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 34854243 - 34854321
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||| |||||||||||||  ||||||||||  |||||| |||||||||| |||| |||  || |||||||||||||||    
T  34854243 tgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagtga 34854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 1979052 - 1979109
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||| |||| ||||||||| ||||  ||||||||||| |||||||||||||||    
T  1979052 gaaaggtgcctgcaagcacgttagtactctgacgctcaagtcagtaatggaactgaga 1979109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 16363424 - 16363465
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  16363424 gaaaggtgcatgtaggcatgttagcactccaacgctcaagtc 16363465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 43172114 - 43172069
Alignment:
Q  43 ggcacgttagcactccaacgctcaagtcggtaatggaactgagaaa 88  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||    
T  43172114 ggcacgttagcactccaatgctcaagtcaataatggaactgagaaa 43172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 9573523 - 9573463
Alignment:
Q  33 ggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtg 93  Q
    ||||| ||||||||||||||||||||||||| ||||||  ||  |||||||||||| ||||    
T  9573523 ggtgcctgcaggcacgttagcactccaacgcacaagtcaatatgggaactgagaaagagtg 9573463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 25173869 - 25173928
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaa 67  Q
    ||||||||||||  || | | |||||||||||||||| ||||||||||| ||||||||||    
T  25173869 gatgagtctttggagtgggacgaaaggtgcatgcaggtacgttagcacttcaacgctcaa 25173928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 27803370 - 27803399
Alignment:
Q  41 caggcacgttagcactccaacgctcaagtc 70  Q
    ||||||||||||||||||||||||||||||    
T  27803370 caggcacgttagcactccaacgctcaagtc 27803399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 2226633 - 2226673
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagt 69  Q
    ||||||||  ||||||||| |||||||||||||||||||||    
T  2226633 gaaaggtgtctgcaggcacattagcactccaacgctcaagt 2226673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 16363555 - 16363595
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    ||||||||||| ||||| ||||||||||||||| |||||||    
T  16363555 aaaggtgcatgtaggcatgttagcactccaacgatcaagtc 16363595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 29373733 - 29373773
Alignment:
Q  327 acgtgtcaatgtgggattggtcttgtgaccgatccagaaca 367  Q
    ||||||||  |||||||||||||| ||||||||||||||||    
T  29373733 acgtgtcatcgtgggattggtcttctgaccgatccagaaca 29373773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 7854 - 8003
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||||||   ||| ||| |||||||||||| |||||||||||||||| ||||||||| || |||||| || ||||||| |||| |||||||||||||    
T  7854 gatgagtcttcacggtggaaggaaaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttg 7953  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtaga 157  Q
    ||||||||||||| ||| ||||| ||||||||||| |||| |||| ||||    
T  7954 tgaaaagtgaatcataatttgagtgtgaaacaatgtcaccattatataga 8003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 28723862 - 28723665
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaat 141  Q
    ||||||||| ||| |||||||||||||||  |||||||||| ||||| |||| ||||||| ||||||||||||||||||||| || ||||||||||||||    
T  28723862 aggcacgttggcaatccaacgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaatcgtatctggagggtgaaacaat 28723763  T
Q  142 gccacctttatgtagacgcgcgttgtggataaccatctccgggttttacaacatgtgtttagggaacgattagtgggcacgagtagggtgatcctcgc 239  Q
    | || | |||| ||| ||||| ||| | |||||  |||| || |||| |||| |||| | ||||| ||||||| || |||  ||||||||||||||||    
T  28723762 gtcatccttatataggcgcgctttgagaataactgtctctggattttgcaacgtgtgatcagggagcgattagaggacacatgtagggtgatcctcgc 28723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 17143837 - 17143739
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||||    
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgggggtgaaacaa 17143739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 2311953 - 2311776
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||| ||||| ||||||||||||  |||||  |||||||||||||||||||||| || | || |||  ||||||| | || ||||||||||||||||    
T  2311953 gagtcttcgtggtggaatgaaaggtgtctgcagatacgttagcactccaacgctcaaatcagcaagggatttgagaaagaatgtgtagaaagtgttgtga 2311854  T
Q  111 aaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtttt 188  Q
    || ||||||| || |||||||||||| ||||| |||| |||| |||||||||| |  | ||||||  |||||||||||    
T  2311853 aaggtgaatcataccttgagggtgaagcaatgtcacccttatttagacgcgcgataagaataaccgcctccgggtttt 2311776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 30606931 - 30607076
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaat 141  Q
    ||||| ||||||| ||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||  || ||||||||||||  ||     
T  30606931 aggcatgttagcattccaacgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttgagggtgaagtaag 30607030  T
Q  142 gccacctttatgtagacgcgcgttgtggataaccatctccgggttt 187  Q
    |||||| |||| ||| ||||||||  | |||||  |||||||||||    
T  30607031 gccacccttatataggcgcgcgttaagaataactgtctccgggttt 30607076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 8123036 - 8122893
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||||||   |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| || ||| ||||| |  || ||||| ||||    
T  8123036 gatgagtcttcacggtaaaatgaaaggtgtatgcaggcacgttagcactccaacgctcaagtcagtaatgaaattga-aaaaactatgtcgaaagcgttg 8122938  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttat 152  Q
    ||||||||||||| || |||||||||||| ||||| |||| ||||    
T  8122937 tgaaaagtgaatcataccttgagggtgaagcaatgtcacccttat 8122893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 152
Target Start/End: Complemental strand, 9801184 - 9801062
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| |||| |||||||||||||| ||| |||||||| ||||| |||| |||||| |||| |||||||||||||||||||||||||| || ||||    
T  9801184 gaaaggtgcctgcaagcacgttagcactc-aacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttg 9801086  T
Q  129 agggtgaaacaatgccacctttat 152  Q
    |||||||| ||||| |||| ||||    
T  9801085 agggtgaagcaatgtcacccttat 9801062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 431436 - 431310
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||| | ||| ||| ||||||||| | ||| |||||||||||| | |||||||||||  |||||||||||||||| ||||||| ||||||| ||||    
T  431436 tgagtcttcgcggtggaaagaaaggtgcctacagacacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtg 431337  T
Q  110 aaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||| ||  ||||||||||||    
T  431336 aaaagtgaattgtcccttgagggtgaa 431310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 21342388 - 21342281
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||||  |||||||||||||| || | ||||||||||||| ||||||||||||| ||| ||||  ||||||||||||||||||||||||| ||  |||    
T  21342388 gaaaggtatatgcaggcacgttaacagtacaacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaatcatacattg 21342289  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  21342288 agggtgaa 21342281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 16704405 - 16704551
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaat 141  Q
    ||||||||| ||| ||||||||| ||||| ||||||||  ||||||| || | |||||||||||||||||||||||||| || |||||||||||| |||     
T  16704405 aggcacgttggcattccaacgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaag 16704504  T
Q  142 gccacctttatgtagacgcgcgttgtggataaccatctccgggtttt 188  Q
      |||| |||| ||| |||||||||  |||||||  |||||| ||||    
T  16704505 ttcacccttatataggcgcgcgttggtgataaccgcctccggatttt 16704551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 28715569 - 28715477
Alignment:
Q  44 gcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaat 141  Q
    ||||||||||||||||||     |||| ||||||||||||||||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||    
T  28715569 gcacgttagcactccaac-----agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaatcataccttgagggtgaaacaat 28715477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 1770796 - 1770903
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||||| ||| ||| ||||||||  |||| ||| ||||| ||||| ||||||||||  |||||||||||||| || |||| |||||||||||||||    
T  1770796 tgagtctttgcggtggaaggaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtg 1770895  T
Q  110 aaaagtga 117  Q
    ||||||||    
T  1770896 aaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 12516175 - 12516282
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| ||||| |||||||||||||| ||||||||||  ||||||||||||||||| | || |||  ||||||||||||||||||   ||| ||||    
T  12516175 gaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtgatatgtaccttg 12516274  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  12516275 agggtgaa 12516282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 6109755 - 6109650
Alignment:
Q  28 tgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaactt 127  Q
    |||||||||| || |||||||||||||||||||| || ||||| ||||| ||||||| || || ||   ||||||||||||||||||||||||  | |||    
T  6109755 tgaaaggtgcttgtaggcacgttagcactccaacacttaagtcagtaatcgaactgaaaacaaatgtaaagaaagtgttgtgaaaagtgaatcacatctt 6109656  T
Q  128 gagggt 133  Q
    ||||||    
T  6109655 gagggt 6109650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 12108388 - 12108468
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaa 88  Q
    |||||||| | ||||| |||||||||||||||||| ||| |||| |||||| ||||||||||  |||||||||||||||||    
T  12108388 gatgagtcctcgtggtggaatgaaaggtgcatgcatgcatgttaccactccgacgctcaagttagtaatggaactgagaaa 12108468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 14860221 - 14860093
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||| |||| ||||| ||| ||||||||| ||||||||| |||||||||  |  ||||| || ||||||||||||||||| |||  |||  ||||||||    
T  14860221 gatgaatcttcgtggtggaacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttg 14860122  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||   ||| ||||||||||||    
T  14860121 tgaaaagtgatgtgtaccttgagggtgaa 14860093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17485744 - 17485618
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||| | ||| ||| ||||||||  ||  ||||| ||||||| |||||||||||||| ||||||||| ||||||  |||| ||||| | |||||||    
T  17485744 tgagtcttcgcggtggaacgaaaggtgtctgtgggcacattagcaccccaacgctcaagtcagtaatggaattgagaaggagtgtgtagagaatgttgtg 17485645  T
Q  110 aaaagtgaatcgtaacttgagggtgaa 136  Q
     ||| ||||| ||| ||||||||||||    
T  17485644 taaaatgaatagtaccttgagggtgaa 17485618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 21649382 - 21649460
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    |||||||||| | ||| ||| ||||||||| |||| |||||||||||| |||||| ||||||| |||||||||||||||    
T  21649382 gatgagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtcagtaatggaactgaga 21649460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 13085189 - 13085083
Alignment:
Q  14 tctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaa 113  Q
    |||| ||||| | ||||||| ||  |||||||| || |||| |||||||||||||||  ||||| |||||||||| | |  ||||||||| |||||||||    
T  13085189 tcttcgtggtgggatgaaagatgtctgcaggcatgtaagcattccaacgctcaagtcaataatgaaactgagaaagaatatgtagaaagtattgtgaaaa 13085090  T
Q  114 gtgaatc 120  Q
    |||||||    
T  13085089 gtgaatc 13085083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 12251979 - 12252066
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||||||||||||| ||||||||||  || |||||||| |||| | || ||||||| |||| |||  || |||||||||||||||    
T  12251979 aaaggtgcatgcaggcatgttagcactctgacactcaagtcagtaacgaaaatgagaaagagtgtgtaagaattgttgtgaaaagtga 12252066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 9007877 - 9007836
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  9007877 gaaaggtgcctgcaggcacgttaacactccaacgctcaagtc 9007836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 13932956 - 13933025
Alignment:
Q  51 agcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    |||| |||||| |||||||| ||||| ||||||| |||| ||| || |||| ||||||||||||||||||    
T  13932956 agcagtccaacactcaagtcagtaattgaactgataaaatgtgggttgaaaatgttgtgaaaagtgaatc 13933025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 10896103 - 10896133
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagt 69  Q
    |||||||||||||||||||||||||||||||    
T  10896103 tgcaggcacgttagcactccaacgctcaagt 10896133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 20622396 - 20622505
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtaga--aagtgttgtgaaaagtgaatcgtaact 126  Q
    ||||||| | |||||||| |||| ||||   ||||||||||| ||||||  |  |||||| |||| |||||  ||||| ||||||||||||||| || ||    
T  20622396 gaaaggttcctgcaggcatgttaacactttgacgctcaagtcagtaatgagatagagaaatagtgtgtagataaagtggtgtgaaaagtgaatcatacct 20622495  T
Q  127 tgagggtgaa 136  Q
    ||||||||||    
T  20622496 tgagggtgaa 20622505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 12731643 - 12731574
Alignment:
Q  48 gttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||| ||||| ||||||| |||  |||||||||||||||| ||||  ||  ||||||||||||||||||    
T  12731643 gttagtactccgacgctcacgtcattaatggaactgagaaagagtgtataagaagtgttgtgaaaagtga 12731574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 17396721 - 17396782
Alignment:
Q  25 gaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||| ||| || ||||||||||||||||| ||  |||||||  ||||||||||||||    
T  17396721 gaatgaaagttgcttgtaggcacgttagcactccgacaatcaagtcaataatggaactgaga 17396782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 26620510 - 26620469
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    ||||||||||||||||||| ||||||||| |||| |||||||    
T  26620510 gaaaggtgcatgcaggcacattagcactctaacgttcaagtc 26620469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 15058004 - 15058136
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||  |||||| || ||||||||| || ||||||||||| |    
T  15058004 gatgagtctttgtggtggaacgaaaggtgcatgcaggcacgttagcactacaacgcacaagttagtaatgaaattgagaaaaaatgtgtagaaagtgtgg 15058103  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    |||||| | |||| || ||||||||||||||||    
T  15058104 tgaaaaataaatcataccttgagggtgaaacaa 15058136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 17927826 - 17927682
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||| |||||||||| | | |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||   |||  ||||||||||||     
T  17927826 gatgactctttgtggtgggacgaaaggtgcatgcatgcacgttagcactccaacgcttaagtcagtaatggaactgagattgagtatgtagaaagtgtta 17927727  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttat 152  Q
    ||||| ||||||| || ||| |||||||| |||||||||| ||||    
T  17927726 tgaaaggtgaatcataccttaagggtgaagcaatgccacccttat 17927682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 30477641 - 30477738
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||| ||||||||||||||||||||||||||| |||| | |||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||    
T  30477641 tgcatgcacgttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa 30477738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 26917017 - 26916840
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||| ||| | ||| |||||||||||  |||||||||||| | | |||||||||||| ||||||||||||||| | |||| ||||||||||||||||    
T  26917017 gagtcttcgtgatggaacgaaaggtgcatttaggcacgttagcgcactaacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtga 26916918  T
Q  111 aaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtttt 188  Q
    ||||||| || || ||||||  |||| ||||| | || |||| ||| ||||||||| | ||||||  |||| ||||||    
T  26916917 aaagtgagtcataccttgagcatgaagcaatgtcgcccttatataggcgcgcgttgagaataaccgcctccaggtttt 26916840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 3459585 - 3459482
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgtt-gtgaaaagtgaatcgtaactt 127  Q
    ||||||||| ||||||||||||||||||||  |||||||||| |||||||||||||| || |||| |||||||||||| ||||||||| ||||||| |||    
T  3459585 gaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagtaaatcgtacctt 3459486  T
Q  128 gagg 131  Q
    ||||    
T  3459485 gagg 3459482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 13754748 - 13754855
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| ||| ||||||||| |||| || |||||||||| |||||| |||||||||| |||| ||||||||||||||| |||||||||| || ||||    
T  13754748 gaaaggtgcctgctggcacgttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctaccttg 13754847  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  13754848 agggtgaa 13754855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 21416746 - 21416885
Alignment:
Q  47 cgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaatgccac 146  Q
    |||||||||||| ||||||||||| |||||| |||||||||| |||| ||||||||||||||||||| ||||||||| ||| |||||||| |||   |||    
T  21416746 cgttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcgtaccttaagggtgaagcaagttcac 21416845  T
Q  147 ctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    | || | |||  |||||||| | |||||| ||||||||||    
T  21416846 ccttgtataggggcgcgttgggcataaccgtctccgggtt 21416885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 24507427 - 24507554
Alignment:
Q  9 atgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgt 108  Q
    ||||||||||| ||| ||  ||||||||  |||| ||||||||| ||||||||| |||||||  |||||||| ||||||| ||||  |||||||||||||    
T  24507427 atgagtctttgcggtggagcgaaaggtgtctgcatgcacgttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgt 24507526  T
Q  109 gaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||||| || ||||||||||||    
T  24507527 gaaaagtgaatcataccttgagggtgaa 24507554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 6928174 - 6928084
Alignment:
Q  46 acgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||| | |||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||    
T  6928174 acgttagcatttcaacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa 6928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 18322934 - 18323024
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    |||||||||||||| || |||| |||||||||||||||||| ||||| ||||||||||| | || ||||||| ||||||||||||||||||    
T  18322934 aaaggtgcatgcagacatgttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaatc 18323024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 5859815 - 5859942
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaac 138  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| ||||| |||| || || |||||| ||| |||||||||||| ||||||  |||| |    
T  5859815 tgcagacacgttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgttgagagtgttttgagaagtgaatcgtaccttgagattgaagc 5859914  T
Q  139 aatgccacctttatgtagacgcgcgttg 166  Q
    || | |||| |||| ||| |||||||||    
T  5859915 aaggtcacccttatataggcgcgcgttg 5859942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 17698386 - 17698251
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||  ||| || ||||||||| ||||||   |||||| |||||||||| |||||| |||| |||||||||||||||||||||||||  ||  |||    
T  17698386 gaaaggtgtctgcgggtacgttagcattccaacatgcaagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaattatactttg 17698287  T
Q  129 agggtgaaacaatgccacctttatgtagacgcgcgt 164  Q
    |||||||| ||| ||||||  ||| ||| |||||||    
T  17698286 agggtgaagcaaggccacccatatataggcgcgcgt 17698251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 23269215 - 23269311
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtg 104  Q
    |||||||||||| ||| ||| ||||||||  | |||||| |||||||||||||| || ||||| ||||||||||||| ||| |||| ||||||||||    
T  23269215 gatgagtctttgcggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtgtgtagaaagtg 23269311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 13764979 - 13765069
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaat 119  Q
    ||||||||  |||||||||||||  ||||||| | ||||||  |||||| |||||||||| |||| ||||||||||||||| |||||||||    
T  13764979 gaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaat 13765069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 24070866 - 24070938
Alignment:
Q  53 cactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaac 125  Q
    ||||||||| || ||||| ||||||||||| ||||| |||| |||||||||||||||| ||||||||| ||||    
T  24070866 cactccaacacttaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtgaatcataac 24070938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 24576684 - 24576577
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| ||||||||||||| |||||  ||||||||||| ||||||||||| | ||  |||| |||  |||||||||||||||| |   ||| ||||    
T  24576684 gaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagtaatgtgtaccttg 24576585  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  24576584 agggtgaa 24576577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 1909827 - 1909745
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtg 93  Q
    |||||||||  || ||| ||||||||||||||| |||||||||| | ||||||| ||||| |||||| |||||||||| ||||    
T  1909827 gagtctttgcagtggaacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtg 1909745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 17319744 - 17319661
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagca---ctccaacgctcaagtcggtaatggaactgagaaa 88  Q
    |||||||||| ||||| ||| |||||||||||||||||| |||||||   |||  | | ||||||| |||||||||||||||||    
T  17319744 gatgagtcttcgtggtggaacgaaaggtgcatgcaggcatgttagcagcactctgatgttcaagtcagtaatggaactgagaaa 17319661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 23269306 - 23269383
Alignment:
Q  111 aaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtttt 188  Q
    ||||||||||||| |||||||||||| ||||| ||||  ||| ||| |||| |||| |||||||| |||||| |||||    
T  23269306 aaagtgaatcgtaccttgagggtgaagcaatgtcacccatatataggcgcgtgttgaggataaccgtctccgagtttt 23269383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 14666939 - 14666883
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    |||||||| |||||||||||||||||||| ||| |||||||  |||||||| |||||    
T  14666939 aaaggtgcctgcaggcacgttagcactccgacgatcaagtcaataatggaattgaga 14666883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 11776326 - 11776190
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaac 138  Q
    |||||||||||||||||||| ||||||||        ||||||||||||| ||||  ||   ||||||| |||||||||   ||| ||||||||||||||    
T  11776326 tgcaggcacgttagcactccgacgctcaa--------tggaactgagaaagagtgtttaaggagtgttgggaaaagtgatatgtaccttgagggtgaaac 11776235  T
Q  139 aatgccacctttatgtagacgcgcgttgtggataaccatctccgg 183  Q
    ||   ||||||||| |||  |||||||| | |||||| |||||||    
T  11776234 aagttcacctttatataggtgcgcgttgggcataaccgtctccgg 11776190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 22903096 - 22903195
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaat 141  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  22903096 aggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaaacaat 22903195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 8938879 - 8939008
Alignment:
Q  8 gatgagtctttgtg--gtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgt 105  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||| |||||||| |||| |||| ||| ||||||||||||| |||| ||| ||||||     
T  8938879 gatgagtctttgtgcggtagaacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaagtg- 8938977  T
Q  106 tgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    || |||||||||||| ||  |||||||||||    
T  8938978 tgggaaaagtgaatcatacattgagggtgaa 8939008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 26994691 - 26994570
Alignment:
Q  45 cacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaatgcc 144  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||| ||||  ||||| ||||||||||||||||||| || |||| ||||||| ||| | |    
T  26994691 cacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttgggggtgaagcaaggtc 26994592  T
Q  145 acctttatgtagacgcgcgttg 166  Q
    ||| |||| ||| |||||||||    
T  26994591 acccttatataggcgcgcgttg 26994570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 27083356 - 27083232
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||| | ||||||| |||| |||  ||||| ||||||||||||||||| |||||||| |||| | ||||| |||| |||| ||||||||||||||||    
T  27083356 gagtcttcgcggtagaacgaaatgtgtctgcagacacgttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtagaaagtgttgtga 27083258  T
Q  111 aaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||| || ||||||||||||    
T  27083257 aaagtgaatcataccttgagggtgaa 27083232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 22865751 - 22865858
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||||||||||||| |||||||||||   ||||||||||  |||||||||||||||||||||| |||  || |||||||||||||||   ||| ||||    
T  22865751 gaaaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatgtgtaccttg 22865850  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  22865851 agggtgaa 22865858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 25537377 - 25537483
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||| | ||| ||| ||||||||| |||| |||||||||||||||||||||||||   ||||||||||||||||| | || |||  |||||||||||    
T  25537377 gagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtga 25537476  T
Q  111 aaagtga 117  Q
    |||||||    
T  25537477 aaagtga 25537483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 20025289 - 20025380
Alignment:
Q  45 cacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||| ||||||||||||   ||| | |||| |||||||||| |||| ||||||||||||||| |||||||||| |  ||||||||||||    
T  20025289 cacgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcattccttgagggtgaa 20025380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 25333725 - 25333816
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||| | ||||||||  |||| ||||| ||||||||||| |||||| |||| ||| | |||| |||||||||||||| |||||||||||    
T  25333725 gaaaggtacttgcaggcatattagtactccgacgctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtgaatc 25333816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 32418587 - 32418480
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||| || ||||||||||| | |||||  |||||||||||  | ||||||| |||||| |||| ||||| ||||||||||| |||||||| || ||||    
T  32418587 gaaaggagcctgcaggcacgtcaacactctgacgctcaagtcactgatggaacagagaaagagtgtgtagagagtgttgtgaagagtgaatcataccttg 32418488  T
Q  129 agggtgaa 136  Q
    ||| ||||    
T  32418487 aggatgaa 32418480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 26163607 - 26163689
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtg 93  Q
    ||||||||| | | ||| |||||||||||||| |||| |||||||||||||||||||||| | |||| |||| ||||| ||||    
T  26163607 gagtctttgggatggaacgaaaggtgcatgcatgcacattagcactccaacgctcaagtcagaaatgaaactaagaaagagtg 26163689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 26348180 - 26348127
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaact 82  Q
    ||||||||  ||||||||||||||||||||||||||||||||  ||||||||||    
T  26348180 gaaaggtgtctgcaggcacgttagcactccaacgctcaagtcattaatggaact 26348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 24647302 - 24647366
Alignment:
Q  53 cactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||||||||||| || ||||||||||||| ||| |||| |||  ||||||||||||||||||    
T  24647302 cactccaacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 24647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 19993265 - 19993182
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaa 113  Q
    |||||| | ||||| ||| |||||| |||||  |||||||| ||||||||||||||||| || | || ||||||||||||||||    
T  19993265 aaaggttcttgcagacacattagcagtccaatactcaagtcagtaatggaactgagaaagagcgtgttgaaagtgttgtgaaaa 19993182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 25829077 - 25828978
Alignment:
Q  41 caggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    |||||||||||||| ||  |||||| ||||  |||||||| |||||||||||| |||  |||| |||||||||||||   ||  ||||||||||||||||    
T  25829077 caggcacgttagcaatctgacgctctagtcaataatggaattgagaaaaagtgtgtaagaagtattgtgaaaagtgatgtgtcccttgagggtgaaacaa 25828978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 34493569 - 34493612
Alignment:
Q  95 gtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaac 138  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  34493569 gtagaaagtgttgtgaaaagtgaatcataccttgagggtgaaac 34493612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 18799780 - 18799827
Alignment:
Q  39 tgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||| |||||||||||||| ||| ||||||| |||||||||||||||    
T  18799780 tgcagtcacgttagcactccgacgatcaagtcagtaatggaactgaga 18799827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 7449761 - 7449823
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    |||||||||||| ||| | | ||||||||||| ||| ||||||||||||| |||||| |||||    
T  7449761 gatgagtctttgcggtgggacgaaaggtgcattcagacacgttagcactctaacgcttaagtc 7449823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 227800 - 227739
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagt 69  Q
    |||||||||| ||||| | |||||  |||  ||||||||||||||||||| |||||||||||    
T  227800 gatgagtcttcgtggtgggatgaagagtgtctgcaggcacgttagcactcaaacgctcaagt 227739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 16621177 - 16621262
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtg 93  Q
    ||||||||||   ||| ||| |||||||| ||| |||||||||| |||| ||||||||||| |  || ||||||||||||| ||||    
T  16621177 gatgagtcttcacggtggaacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaagagtg 16621262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 30808706 - 30808665
Alignment:
Q  33 ggtgcatgcaggcacgttagcactccaacgctcaagtcggta 74  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||    
T  30808706 ggtgcctgcagacacgttagcactccaacactcaagtcggta 30808665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 30827060 - 30827093
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacg 62  Q
    ||||||||||||||||||||||||||||| ||||    
T  30827060 gaaaggtgcatgcaggcacgttagcactcaaacg 30827093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 18803897 - 18803965
Alignment:
Q  18 tgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    |||||| ||| ||||||||| || || |||||||||||||||||| | || || ||||||||| |||||    
T  18803897 tgtggtggaacgaaaggtgcctgaagacacgttagcactccaacgattaattcagtaatggaattgaga 18803965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 24546318 - 24546393
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||||||  |||| ||| ||||||||  |||||||||||||| ||||| ||||| ||||| ||||||||| |||||    
T  24546318 tgagtcttcatggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgaga 24546393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 95910 - 95775
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    |||||| | ||||||||||||| |||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |    
T  95910 aaaggttcctgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaatcataccttca 95811  T
Q  130 gggtgaaacaatgccacctttatgtagacgcgcgtt 165  Q
    ||||||| ||| | |||| |||| ||| | ||||||    
T  95810 gggtgaagcaacgtcacccttatataggcacgcgtt 95775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 40764 - 40893
Alignment:
Q  7 agatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgtt 106  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||| | | || | |||| |||||||    
T  40764 agatgagtctctgtggtagaacgaaaggcgcatgcaggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgtt 40863  T
Q  107 gtgaaaagtgaatcgtaacttgagggtgaa 136  Q
     ||||||||||   ||| ||||||||||||    
T  40864 atgaaaagtgatgtgtaccttgagggtgaa 40893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 20148289 - 20148463
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||||| ||| ||| |||| |||||||||| ||||||||||||||| |||||||||  ||||||||| ||||||| |||  ||||||||||||||||    
T  20148289 gagtctttgcggtggaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagt--gtagaaagtgttgtga 20148386  T
Q  111 aaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggttt 187  Q
    |||||||||| || ||||| |||||| ||| | |||| |||| ||| | ||||||| | |||||   ||||||||||    
T  20148387 aaagtgaatcataccttgatggtgaagcaaggtcacccttatataggcacgcgttgagaataactgcctccgggttt 20148463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 22184539 - 22184365
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||||| ||| ||| |||| |||||||||| ||||||||||||||| |||||||||  ||||||||| ||||||| |||  ||||||||||||||||    
T  22184539 gagtctttgcggtggaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagt--gtagaaagtgttgtga 22184442  T
Q  111 aaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggttt 187  Q
    |||||||||| || ||||| |||||| ||| | |||| |||| ||| | ||||||| | |||||   ||||||||||    
T  22184441 aaagtgaatcataccttgatggtgaagcaaggtcacccttatataggcacgcgttgagaataactgcctccgggttt 22184365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 19305434 - 19305561
Alignment:
Q  9 atgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgt 108  Q
    |||| |||||| ||| ||| ||||||| | |  |||||||||||||||  |||||||||||| |||||||||||||| || |||| ||||||||||||||    
T  19305434 atgaatctttgcggtggaacgaaaggttcctagaggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgt 19305533  T
Q  109 gaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||||| || ||||||||||||    
T  19305534 gaaaagtgaatcataccttgagggtgaa 19305561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 30680960 - 30681141
Alignment:
Q  7 agatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgtt 106  Q
    ||||||||||| | ||| | | ||||||||  ||||  |||||||||||||||||||||||||| |||||| |||||| ||| || | |||||| || ||    
T  30680960 agatgagtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtatt 30681059  T
Q  107 gtgaaaagtgaatcgtaacttgagggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtttt 188  Q
    |||||||||||||| || ||||||| |||| ||||| ||||||||  ||| ||||||||| | ||||||  ||||| |||||    
T  30681060 gtgaaaagtgaatcataccttgaggatgaagcaatgtcacctttagataggcgcgcgttgagaataaccgcctccgagtttt 30681141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 689964 - 689856
Alignment:
Q  23 tagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgt 122  Q
    ||||||||||||||  |||||| || |||||||| ||| ||||||||| |||||||||||||||||  ||| ||| ||||||||||||||||||||||||    
T  689964 tagaatgaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatcgt 689865  T
Q  123 aacttgagg 131  Q
    | |||||||    
T  689864 accttgagg 689856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 18147296 - 18147419
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| || ||| |||||| ||||||||||||||||||  ||||||||| |||||| |||| ||||||||||||||||||||||| || || |||     
T  18147296 gaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgactcataccttt 18147395  T
Q  129 agggtgaaacaatgccacctttat 152  Q
    |||||||| ||||| |||| ||||    
T  18147396 agggtgaagcaatgtcacccttat 18147419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 34187272 - 34187395
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaa 111  Q
    |||||||| ||| ||| ||||||||  ||||| ||||||||||| ||||| |||||||| ||||||||||||||||| |||| ||| ||||||| ||| |    
T  34187272 agtctttgcggtggaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtg-a 34187370  T
Q  112 aagtgaatcgtaacttgagggtgaa 136  Q
    |||||||| ||| ||||||||||||    
T  34187371 aagtgaattgtaccttgagggtgaa 34187395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 15480440 - 15480335
Alignment:
Q  31 aaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgag 130  Q
    ||||||| |||| ||| |||| ||||| ||| ||||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  15480440 aaggtgcctgcaagcaagttatcactcgaactctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcataccttgag 15480341  T
Q  131 ggtgaa 136  Q
     |||||    
T  15480340 agtgaa 15480335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 3404950 - 3404856
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||| ||| ||||| ||| || ||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||| || ||||||||||||    
T  3404950 aggcacattaacactctaacacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcataccttgagggtgaa 3404856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 19730687 - 19730585
Alignment:
Q  34 gtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggt 133  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||| |||  |||||| ||| |||||||   ||| |||||||||    
T  19730687 gtgcatgcaggcatgttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagtgatgtgtaccttgagggt 19730588  T
Q  134 gaa 136  Q
    |||    
T  19730587 gaa 19730585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 9292138 - 9292014
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||||  ||| ||| ||||||||| |||| |||||||||||| | |||||||||||| ||| ||||||||||||| |||  ||| |||||| || ||    
T  9292138 gagtctttacggtggaacgaaaggtgcctgcaagcacgttagcacgctaacgctcaagtcagtattggaactgagaaatagtatgtaaaaagtg-tggga 9292040  T
Q  111 aaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||| || ||||||||||||    
T  9292039 aaagtgaatcataccttgagggtgaa 9292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 186
Target Start/End: Original strand, 22572036 - 22572191
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    |||||||  ||||||||||||||||||   ||||||| ||| ||||||||| ||| ||| |||| |||||| |||||||| |||||||||| || |||||    
T  22572036 aaaggtggctgcaggcacgttagcactatgacgctcatgtcagtaatggaattga-aaagagtgtgtagaaggtgttgtgtaaagtgaatcatatcttga 22572134  T
Q  130 gggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    ||||||| |||   ||||||||| | | ||||||||| | |||||| ||||| ||||    
T  22572135 gggtgaagcaagttcacctttatattggcgcgcgttgagcataaccgtctccaggtt 22572191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 33596851 - 33596958
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||| | ||||||||| ||| ||||| ||||||||| || |||||| |||| |||||||||| |||||||||||||||||||  ||||| || ||||    
T  33596851 gaaaggtacctgcaggcacattaacactctaacgctcaactcagtaatgaaactaagaaaaagtgtgtagaaagtgttgtgaaaatggaatcataccttg 33596950  T
Q  129 agggtgaa 136  Q
    ||| ||||    
T  33596951 aggatgaa 33596958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 31295654 - 31295548
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||| | ||| ||| ||||| ||| |||||||| ||||||||| | ||||||||||| |||||| |||||||||| |||| |||  |||||||||||    
T  31295654 gagtcttcgaggtggaacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtga 31295555  T
Q  111 aaagtga 117  Q
    |||||||    
T  31295554 aaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 34573070 - 34572988
Alignment:
Q  54 actccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||||||  ||||| ||||| |||||||||| ||||||||||| |||||||||||||| ||  |||||||||||    
T  34573070 actccaacgctcaagttagtaatagaactaagaaaaagtgtgtagaaagtgtggtgaaaagtgaatcatacattgagggtgaa 34572988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 9277419 - 9277295
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||||| ||| ||| ||||||| | ||||| ||||||||||||  |||||||||||| ||| ||||||||||||| |||  ||| ||||||| | |     
T  9277419 gagtctttgcggtggaacgaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgtggag- 9277321  T
Q  111 aaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||| || ||||||||||||    
T  9277320 aaagtgaatcataccttgagggtgaa 9277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 9403173 - 9403269
Alignment:
Q  40 gcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||| |||| |||  |||||||||| |||||||   ||| ||||||||||||    
T  9403173 gcaggcacgttagaactccgacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaa 9403269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 12449705 - 12449577
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| ||||| | | ||||||||  || ||||||||||||||||  ||||||||||| |||||||| |||| ||| |||| |||  ||||||||    
T  12449705 gatgagtcttcgtggtgggacgaaaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttg 12449606  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    || |||||||   ||| ||||||||||||    
T  12449605 tggaaagtgatgtgtaccttgagggtgaa 12449577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 14268440 - 14268512
Alignment:
Q  48 gttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | |||| |||||||||||| |||||||||||||    
T  14268440 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatc 14268512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 25008491 - 25008415
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgt 105  Q
    ||||||||||||  ||||||||| |||||||||||||||||| ||||||||| ||||||| |||| ||| |||||||    
T  25008491 gaaaggtgcatgtcggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgt 25008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 4251133 - 4251038
Alignment:
Q  41 caggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||| || |||||||||| ||||||| |||||| || ||||||| |||| | ||| ||||||||||||||| |||| || ||||||||||||    
T  4251133 caggcacgataacactccaacgttcaagtcagtaatgaaaatgagaaagagtgtggagagagtgttgtgaaaagtaaatcatatcttgagggtgaa 4251038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 14080474 - 14080564
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||||| | ||||||| |||||||||  ||||||||||  |||||| |||||||||| |||| |||| |||||||||||||||||||||    
T  14080474 gaaaggtgcctacaggcacattagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtgaatc 14080564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 16343573 - 16343626
Alignment:
Q  33 ggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgaga 86  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||    
T  16343573 ggtgcctgcaggcacgttagcactccaacactcaagtcagtaatggaactgaga 16343626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 16130993 - 16131069
Alignment:
Q  64 tcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    ||||||| ||||||||||||| ||| ||||   |||||||||||||||| ||||||| || ||||||||||||||||    
T  16130993 tcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcataccttgagggtgaaacaa 16131069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 19331799 - 19331695
Alignment:
Q  11 gagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtga 110  Q
    ||||||| | ||| ||| ||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||| ||||| || |  ||||||||||||||     
T  19331799 gagtcttcgcggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaagagagtatagaaagtgttgtgt 19331700  T
Q  111 aaagt 115  Q
    |||||    
T  19331699 aaagt 19331695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 22497420 - 22497312
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| | | | ||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||||||| || | | || |  || |||||||||    
T  22497420 gatgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgttg 22497321  T
Q  108 tgaaaagtg 116  Q
    |||||||||    
T  22497320 tgaaaagtg 22497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 31125242 - 31125314
Alignment:
Q  12 agtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactga 84  Q
    |||||||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||| ||||  |||||||    
T  31125242 agtctttgtggtggaatgaagggtgcttgtaggcacgttagcactccaatgctcaagtctgtaacagaactga 31125314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 10115770 - 10115679
Alignment:
Q  45 cacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||| | |||| ||||||||| |||||| |||||||||| || | ||| ||||| |||||||||||||||| || || |||||||||    
T  10115770 cacgttagctccccaatgctcaagtcagtaatgaaactgagaaagagcgagtaaaaagttttgtgaaaagtgaatcatacctcgagggtgaa 10115679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 34064177 - 34064292
Alignment:
Q  21 ggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||||| ||||||||  ||||||||||||| ||||   ||| ||||||| |||||| |||| ||||| |||| |||  ||||||||||||||||||       
T  34064177 ggtagaacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatgt 34064276  T
Q  121 gtaacttgagggtgaa 136  Q
    ||| ||||||||||||    
T  34064277 gtaccttgagggtgaa 34064292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 10926995 - 10926888
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaa-agtgcgtagaaagtgttgtgaaaagtgaatcgtaactt 127  Q
    ||||||| ||||||| |||||||||||  |||||| ||| || ||| |||||||||||||| |||||||| |||||| || |||||||||||  || |||    
T  10926995 gaaaggttcatgcagacacgttagcacctcaacgcccaattcagtattggaactgagaaaagagtgcgtaaaaagtg-tgggaaaagtgaattatatctt 10926897  T
Q  128 gagggtgaa 136  Q
    | |||||||    
T  10926896 gggggtgaa 10926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 12424415 - 12424328
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtg 116  Q
    ||||||||| |||||||||||||||||| | ||  ||||||| ||||||||||||||| | |  |  || ||||||||||||||||||    
T  12424415 gaaaggtgcctgcaggcacgttagcactacgacaatcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtg 12424328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 11087529 - 11087603
Alignment:
Q  66 aagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    ||||| |||||| |||||||||| |||  |||||  ||||||||||||||||||| || ||||||| ||||||||    
T  11087529 aagtcagtaatgtaactgagaaagagtatgtagattgtgttgtgaaaagtgaatcataccttgaggatgaaacaa 11087603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 13823459 - 13823417
Alignment:
Q  48 gttagcactccaacgctcaagtcggtaatggaactgagaaaaa 90  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  13823459 gttagcactccaacgatcaagtcagtaatggaactgagaaaaa 13823417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 17380100 - 17380178
Alignment:
Q  42 aggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatc 120  Q
    ||||| ||||| ||||||| |  |||||| ||||| ||||||||||| |||| | | ||||||||||||||||||||||    
T  17380100 aggcatgttagtactccaatgtccaagtcagtaatagaactgagaaagagtgtgaataaagtgttgtgaaaagtgaatc 17380178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 12488118 - 12488009
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| || || ||| ||| |||||||||| |||||||||||||| |||||| |||||  |||| ||||| | | | |||| |||   |||||||    
T  12488118 gatgagtcttcgttgtggaacgaagggtgcatgcatgcacgttagcactctaacgctgaagtcaataatagaactaaaatagagtgtgtaagtagtgttg 12488019  T
Q  108 tgaaaagtga 117  Q
    ||||||||||    
T  12488018 tgaaaagtga 12488009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 27861070 - 27860961
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    ||||||| | |||||| |||  |||||||  |||||||| ||||| |||| ||| |||||||| ||||||||||||| | | || | |||  ||||||||    
T  27861070 gatgagtttctgtggtggaacaaaaggtgtctgcaggcatgttagtactctaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttg 27860971  T
Q  108 tgaaaagtga 117  Q
    ||||||||||    
T  27860970 tgaaaagtga 27860961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 31423894 - 31423831
Alignment:
Q  73 taatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||| |||||||||| |||  |||||||||||||||| ||||||||| |  ||||||||||||    
T  31423894 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaatcatgtcttgagggtgaa 31423831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 11714162 - 11714203
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    ||||||||||||||||||||||  ||||||||| ||||||||    
T  11714162 gaaaggtgcatgcaggcacgttcacactccaacactcaagtc 11714203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 12203673 - 12203632
Alignment:
Q  95 gtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||||||||||||||||||| ||  |||||||||||    
T  12203673 gtagaaagtgttgtgaaaagtgaatcatactttgagggtgaa 12203632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 12473477 - 12473428
Alignment:
Q  306 aagacggtgcaagtttatactacgtgtcaatgtgggattggtcttgtgac 355  Q
    |||||||||||||||||  | | |||||||||||||||||||||| ||||    
T  12473477 aagacggtgcaagtttaggccatgtgtcaatgtgggattggtcttttgac 12473428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 18566685 - 18566753
Alignment:
Q  67 agtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtga 135  Q
    |||| ||||||||||||||||| | || |||||||| ||||| |||||||||   || |||||||||||    
T  18566685 agtcagtaatggaactgagaaagattgtgtagaaagcgttgtaaaaagtgaagtctaccttgagggtga 18566753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 19277134 - 19277070
Alignment:
Q  72 gtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||| ||||||| |||| |||  ||||||||||||||||||   ||| ||||||||||||    
T  19277134 gtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaa 19277070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 23768203 - 23768271
Alignment:
Q  49 ttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    |||||||||||| ||||||||| ||||| ||||||| | | |||| |||  |||||||||| |||||||    
T  23768203 ttagcactccaatgctcaagtcagtaattgaactgaaagatagtgtgtaagaagtgttgtggaaagtga 23768271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 33586319 - 33586279
Alignment:
Q  27 atgaaaggtgcatgcaggcacgttagcactccaacgctcaa 67  Q
    ||||||| |||||||| ||||||||||||| ||||||||||    
T  33586319 atgaaagatgcatgcatgcacgttagcacttcaacgctcaa 33586279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 11015 - 10883
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||| | | |||| |||  ||||||||||||||||||   ||| |||||    
T  11015 aaaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttga 10916  T
Q  130 gggtgaaacaatgccacctttatgtagacgcgc 162  Q
    |||||||||||   ||||||||| |||||||||    
T  10915 gggtgaaacaagttcacctttatatagacgcgc 10883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 22876 - 23033
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    ||||||||| ||| |||||||||||||||  ||||||||||| |||||||||||||||||  ||| |||  ||||||||||||||||||   ||| ||||    
T  22876 gaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtgtaccttg 22975  T
Q  129 agggtgaaacaatgccacctttatgtagacgcgcgttgtggataaccatctccgggtt 186  Q
    |||||||| |||   |||| ||||||||  ||||||||  ||||||| ||||| ||||    
T  22976 agggtgaagcaagttcacccttatgtaggtgcgcgttggtgataaccctctccaggtt 23033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 13912 - 14019
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttg 128  Q
    |||||||||||| | ||||||||| ||||||| ||||||||| |||||| |||||||||| |||| |||||||||||||||| ||||||||| || ||||    
T  13912 gaaaggtgcatgaatgcacgttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttg 14011  T
Q  129 agggtgaa 136  Q
    ||||||||    
T  14012 agggtgaa 14019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 6289 - 6395
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    |||||||  |||||||||||||||||| | | ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  6289 aaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcgtaccttga 6388  T
Q  130 gggtgaa 136  Q
    | |||||    
T  6389 gcgtgaa 6395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 8696 - 8571
Alignment:
Q  10 tgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtg 109  Q
    |||||||||| ||| |||| |||||||  ||||| |||||||||||| | ||||||||||| |||||| |||||| ||| |||| |||||||||||||||    
T  8696 tgagtctttgcggtggaataaaaggtgtttgcag-cacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtg 8598  T
Q  110 aaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||| || ||| ||||||||    
T  8597 aaaagtgaatcataccttaagggtgaa 8571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 15515 - 15424
Alignment:
Q  45 cacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaa 136  Q
    |||||||||||||| |||||| |||| ||||||||||||||||| |||   ||||||||||||||||||||||||| || ||||||||||||    
T  15515 cacgttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgagggtgaa 15424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 68892 - 68766
Alignment:
Q  38 atgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggtgaaa 137  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||| |||   ||||||||||||||||||||||||| || |||||||| |||     
T  68892 atgcagacacgttagcactccaacgctcaagttagtaatggaactgagaaagagt--atagaaagtgttgtgaaaagtgaatcataccttgagggagaag 68795  T
Q  138 caatgccacctttatgtagacgcgcgttg 166  Q
    ||| | |||| |||| ||| | |||||||    
T  68794 caaggtcacccttatataggcacgcgttg 68766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 29398 - 29288
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| | ||| ||| |||||||||||| || || ||||||||||||||||||||||| |||||| || | || || |||  |||||||||||||    
T  29398 gatgagtcttcgcggtggaacgaaaggtgcatggagtcatgttagcactccaacgctcaagtcagtaatgaaaataaggaagagt--gtagaaagtgttg 29301  T
Q  108 tgaaaagtgaatc 120  Q
    |||||||||||||    
T  29300 tgaaaagtgaatc 29288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 326 - 206
Alignment:
Q  47 cgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga-atcgtaacttgagggtgaaacaatgcca 145  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||| |||  |||||||||||||||||| |  ||| |||||||||||| |||   ||    
T  326 cgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgagaatgtaccttgagggtgaagcaagttca 227  T
Q  146 cctttatgtagacgcgcgttg 166  Q
    || |||| ||| |||||||||    
T  226 cccttatctaggcgcgcgttg 206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 379685 - 379813
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| | ||| ||| |||||||||||  |||||||||||||||   || || ||||| ||||||||||||||||| |||| |||  ||||||||    
T  379685 gatgagtcttcgcggtggaacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttg 379784  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaa 136  Q
    ||||||||||   ||| ||||||||||||    
T  379785 tgaaaagtgatgtgtaccttgagggtgaa 379813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 121126 - 121005
Alignment:
Q  15 ctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaag 114  Q
    ||||| ||| ||||||||||||| |  |  |||||||| ||||  | ||| ||||| ||||||||||||||||| |||| ||| ||||||||||||||||    
T  121126 ctttgcggtggaatgaaaggtgcctagaaacacgttagtactctgatgcttaagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaag 121027  T
Q  115 tgaatcgtaacttgagggtgaa 136  Q
    |||   ||| ||||||||||||    
T  121026 tgatgtgtaccttgagggtgaa 121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 73902 - 73796
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttga 129  Q
    |||||||||| |||||| ||||||||||  |||||||| |  ||||||||  ||| ||| |||||||||||||||||||||||||| |||| || ||| |    
T  73902 aaaggtgcattcaggcatgttagcactctgacgctcaaattagtaatggatttgaaaaagagtgcgtagaaagtgttgtgaaaagtaaatcataccttca 73803  T
Q  130 gggtgaa 136  Q
    |||||||    
T  73802 gggtgaa 73796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 10840 - 10760
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaa 88  Q
    |||||||||| ||||| ||||||||||||  || ||||| ||||||||||| ||| ||||||| |||||||||||||||||    
T  10840 gatgagtcttcgtggtggaatgaaaggtgtctgtaggcatgttagcactccgacgttcaagtcagtaatggaactgagaaa 10760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 35243 - 35327
Alignment:
Q  29 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaa 113  Q
    |||| |||| |||||||||||||||||||  || |||||||| |||| |||||||||||| |||| || ||||||||||||||||    
T  35243 gaaatgtgcttgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaa 35327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 215255 - 215349
Alignment:
Q  22 gtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtg 116  Q
    |||||| ||||| ||  |||||||||||||||| ||||||||||||||| |||||| |||||| | | |||| |||  |||||||||||||||||    
T  215255 gtagaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 6982 - 6850
Alignment:
Q  8 gatgagtctttgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttg 107  Q
    |||||||||| ||||| ||| ||||| |||  | |||||||||||  |||  ||||||||||| ||| || |||||||||  |||| |||  ||||||||    
T  6982 gatgagtcttcgtggtggaacgaaagatgctggtaggcacgttaggtctctgacgctcaagtcagtattgaaactgagaacgagtgtgtaagaagtgttg 6883  T
Q  108 tgaaaagtgaatcgtaacttgagggtgaaacaa 140  Q
    ||||||||||   ||| ||||||||||||||||    
T  6882 tgaaaagtgatgtgtaccttgagggtgaaacaa 6850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 8962 - 9014
Alignment:
Q  31 aaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactg 83  Q
    ||||||| ||||| |||||||||||||||||||||||||  ||||||||||||    
T  8962 aaggtgcctgcagacacgttagcactccaacgctcaagtatgtaatggaactg 9014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 69324 - 69284
Alignment:
Q  30 aaaggtgcatgcaggcacgttagcactccaacgctcaagtc 70  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  69324 aaaggtgcctgcaggcacgttagcactccaacgctcaagtc 69284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 4536 - 4470
Alignment:
Q  18 tgtggtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactga 84  Q
    |||||| ||| ||||||||  |||| |||||||||||||||||||||||||||  ||||| ||||||    
T  4536 tgtggtggaacgaaaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactga 4470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 20579 - 20510
Alignment:
Q  48 gttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtga 117  Q
    ||||||||||  |||||||||||  ||| |||||||||||| |||| ||||||| |||| ||||||||||    
T  20579 gttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtga 20510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 21714 - 21612
Alignment:
Q  34 gtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgcgtagaaagtgttgtgaaaagtgaatcgtaacttgagggt 133  Q
    |||| ||| ||||||||||||||||||| |||||||| ||| || |||||| | | ||||  ||  |||||||||| |||||||   ||| |||||||||    
T  21714 gtgcctgcgggcacgttagcactccaacactcaagtcagtattgaaactgaaagagagtgtttaagaagtgttgtggaaagtgatgtgtaccttgagggt 21615  T
Q  134 gaa 136  Q
    |||    
T  21614 gaa 21612  T

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