View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232-Insertion-6 (Length: 504)
Name: NF2232-Insertion-6
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 7 - 504
Target Start/End: Complemental strand, 53999769 - 53999280
Alignment:
| Q |
7 |
ataatggaaggagtgttattatgataatgataaaaagaaatgtaaagctttagtgttcaattgttgtgataagtagcatgtttatcacttctaaacaaaa |
106 |
Q |
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| T |
53999769 |
ataatggaaggagt----ttatgataatgataaaaagaaatgtaaagctttagtgttcaattgttgtgataagtagcatgtttatcacttctaaacaaaa |
53999674 |
T |
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| Q |
107 |
gattgaaatgtgactcaatgaatgtcaagtagtttgagaattacataatctcattaattttacaacacatatatatactcaagaaaactcataatccctg |
206 |
Q |
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| T |
53999673 |
gattgaaatgtgactcgatgaatgtcaagtagtttgagaattacataatctcattaattttacaacacatata----ctcaagaaaactcataatccctg |
53999578 |
T |
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| Q |
207 |
gtttggccaattgactcaatttttacaacatattatgagtctaagccggctgcaattttgtctcttgaatttctggtttgccgagctccaaaaacaccaa |
306 |
Q |
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| T |
53999577 |
gtttggccaattgactcaatttttacaacatattatgagtctaagccggctgcaattttgtctctagaatttctggtttgccgagctccaaaaacaccaa |
53999478 |
T |
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| Q |
307 |
tcttccaattatgtctcatggctcatcaacctcttgaatttgtacaatgaactcaatacaaattgcagttaacgaacaaccaaacctcaatcatcagctg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53999477 |
tcttccaattatgtctcatggctcatcaacctcttgaatttgtacaatgaactcaatacaaattgcagttaacgaacaaccaaacctcaatcatcagctg |
53999378 |
T |
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| Q |
407 |
agttgcaaatcaacatctcctatattatttgagaccaaaattgaattgtgttacaaaccaaaacagttcaatcttgtcaagtgatcatcaccattctc |
504 |
Q |
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| T |
53999377 |
agttgcaaatcaacatctcctatattatttgagaccaaaattgaattgtgttacaaaccaaaacagttcaatcttgtcaagtgatcatcaccattctc |
53999280 |
T |
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