View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232-Insertion-7 (Length: 461)

Name: NF2232-Insertion-7
Description: NF2232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232-Insertion-7
NF2232-Insertion-7
[»] chr4 (32 HSPs)
chr4 (8-459)||(18403560-18404010)
chr4 (260-380)||(55476086-55476205)
chr4 (261-351)||(8409720-8409810)
chr4 (255-380)||(8011030-8011154)
chr4 (255-341)||(24719723-24719810)
chr4 (273-337)||(8020714-8020778)
chr4 (231-333)||(8367344-8367448)
chr4 (255-380)||(7044874-7044998)
chr4 (291-380)||(8743708-8743797)
chr4 (388-448)||(8409491-8409551)
chr4 (262-380)||(9149624-9149741)
chr4 (261-380)||(20812638-20812759)
chr4 (255-348)||(6346849-6346943)
chr4 (255-380)||(4156964-4157087)
chr4 (292-353)||(5846050-5846111)
chr4 (288-348)||(7045083-7045143)
chr4 (297-380)||(22060666-22060749)
chr4 (300-380)||(7825161-7825239)
chr4 (290-380)||(18459546-18459634)
chr4 (230-350)||(5884162-5884283)
chr4 (154-235)||(7045218-7045299)
chr4 (317-380)||(7815758-7815819)
chr4 (253-346)||(8889372-8889463)
chr4 (288-332)||(10394768-10394812)
chr4 (255-346)||(17466223-17466314)
chr4 (283-375)||(5943170-5943259)
chr4 (322-380)||(7803207-7803263)
chr4 (283-341)||(27527946-27528004)
chr4 (262-325)||(46664210-46664269)
chr4 (242-283)||(10143172-10143213)
chr4 (255-346)||(36120968-36121058)
chr4 (255-346)||(9911305-9911396)
[»] chr5 (20 HSPs)
chr5 (230-449)||(22984683-22984906)
chr5 (230-380)||(41427516-41427666)
chr5 (283-380)||(19377710-19377807)
chr5 (260-338)||(15052003-15052081)
chr5 (285-380)||(187809-187903)
chr5 (230-380)||(15446308-15446459)
chr5 (262-380)||(24648128-24648245)
chr5 (255-341)||(43005753-43005840)
chr5 (384-449)||(19377362-19377427)
chr5 (288-348)||(26021462-26021522)
chr5 (255-380)||(30804034-30804158)
chr5 (260-336)||(9996882-9996959)
chr5 (255-346)||(19579086-19579178)
chr5 (255-346)||(23172322-23172413)
chr5 (230-281)||(13341579-13341630)
chr5 (283-336)||(13348822-13348876)
chr5 (316-380)||(29270241-29270302)
chr5 (255-346)||(18843859-18843950)
chr5 (255-346)||(20321086-20321178)
chr5 (255-341)||(41688560-41688645)
[»] chr2 (24 HSPs)
chr2 (260-380)||(974435-974555)
chr2 (260-380)||(41002123-41002242)
chr2 (260-380)||(34577989-34578106)
chr2 (260-380)||(21869233-21869353)
chr2 (262-380)||(7301885-7302002)
chr2 (260-372)||(20034134-20034245)
chr2 (260-375)||(27524008-27524122)
chr2 (260-380)||(26251623-26251746)
chr2 (283-370)||(19245704-19245791)
chr2 (255-380)||(25539039-25539163)
chr2 (255-367)||(16766910-16767020)
chr2 (227-380)||(19519490-19519637)
chr2 (255-379)||(24473931-24474056)
chr2 (261-380)||(27406902-27407020)
chr2 (255-367)||(34841705-34841816)
chr2 (316-380)||(27749717-27749781)
chr2 (269-370)||(5395430-5395530)
chr2 (246-380)||(19492043-19492177)
chr2 (255-325)||(13502567-13502638)
chr2 (261-342)||(31023449-31023531)
chr2 (260-346)||(1690627-1690713)
chr2 (255-341)||(8428370-8428457)
chr2 (255-313)||(27749416-27749474)
chr2 (261-346)||(35565857-35565939)
[»] chr7 (18 HSPs)
chr7 (260-380)||(25842643-25842762)
chr7 (260-380)||(1981235-1981354)
chr7 (260-380)||(23618341-23618460)
chr7 (230-356)||(7307132-7307257)
chr7 (230-380)||(8629610-8629757)
chr7 (260-380)||(8254018-8254140)
chr7 (234-380)||(8304182-8304329)
chr7 (224-348)||(17808990-17809115)
chr7 (255-380)||(26565442-26565565)
chr7 (230-328)||(4574878-4574977)
chr7 (283-380)||(21157606-21157700)
chr7 (255-346)||(44944739-44944830)
chr7 (261-327)||(30294408-30294475)
chr7 (387-448)||(1981469-1981530)
chr7 (230-306)||(26340254-26340331)
chr7 (255-346)||(5058673-5058764)
chr7 (295-353)||(48621593-48621651)
chr7 (388-449)||(8303723-8303784)
[»] scaffold0001 (1 HSPs)
scaffold0001 (234-445)||(142659-142872)
[»] chr6 (20 HSPs)
chr6 (230-380)||(27890483-27890633)
chr6 (234-380)||(31407405-31407552)
chr6 (242-380)||(31108254-31108390)
chr6 (234-380)||(33593036-33593183)
chr6 (269-370)||(20399994-20400096)
chr6 (230-380)||(20432475-20432625)
chr6 (262-380)||(7621882-7622000)
chr6 (260-380)||(18490538-18490657)
chr6 (293-353)||(645410-645470)
chr6 (259-369)||(5422563-5422665)
chr6 (287-377)||(24209647-24209739)
chr6 (255-341)||(4841723-4841808)
chr6 (328-375)||(8285471-8285518)
chr6 (255-311)||(3573794-3573851)
chr6 (262-339)||(8275434-8275510)
chr6 (255-346)||(23897955-23898046)
chr6 (255-341)||(26053190-26053276)
chr6 (255-341)||(26073243-26073329)
chr6 (295-380)||(7857103-7857188)
chr6 (255-333)||(4596761-4596843)
[»] chr1 (16 HSPs)
chr1 (230-379)||(12002741-12002890)
chr1 (261-380)||(17197441-17197559)
chr1 (290-380)||(24117606-24117694)
chr1 (316-380)||(8773070-8773134)
chr1 (261-313)||(8773432-8773484)
chr1 (255-380)||(17055813-17055935)
chr1 (255-380)||(18891488-18891612)
chr1 (338-380)||(22789310-22789352)
chr1 (262-325)||(16434674-16434739)
chr1 (244-370)||(18337175-18337293)
chr1 (255-312)||(22789348-22789405)
chr1 (154-235)||(25146542-25146623)
chr1 (384-436)||(21243074-21243126)
chr1 (283-348)||(16446680-16446746)
chr1 (420-449)||(8772983-8773012)
chr1 (255-346)||(42179958-42180050)
[»] scaffold1178 (1 HSPs)
scaffold1178 (260-380)||(432-552)
[»] scaffold0027 (1 HSPs)
scaffold0027 (260-380)||(133027-133146)
[»] chr3 (24 HSPs)
chr3 (260-374)||(8592311-8592425)
chr3 (260-380)||(22970906-22971026)
chr3 (260-380)||(19348651-19348770)
chr3 (260-380)||(18014091-18014208)
chr3 (260-372)||(9169780-9169890)
chr3 (260-340)||(21553804-21553888)
chr3 (261-333)||(10591789-10591861)
chr3 (261-367)||(6861039-6861146)
chr3 (260-325)||(3041375-3041440)
chr3 (316-380)||(8566181-8566244)
chr3 (255-380)||(27676548-27676671)
chr3 (260-329)||(8560369-8560437)
chr3 (388-449)||(20767241-20767302)
chr3 (293-362)||(27055237-27055306)
chr3 (269-350)||(23649366-23649448)
chr3 (384-449)||(21554027-21554092)
chr3 (283-327)||(15806306-15806350)
chr3 (384-448)||(8566356-8566423)
chr3 (255-327)||(28135924-28135997)
chr3 (228-311)||(26208228-26208312)
chr3 (255-346)||(28745920-28746011)
chr3 (255-346)||(39428046-39428138)
chr3 (261-346)||(42696991-42697077)
chr3 (260-295)||(44922284-44922320)
[»] scaffold0684 (1 HSPs)
scaffold0684 (257-380)||(5121-5243)
[»] scaffold0017 (2 HSPs)
scaffold0017 (260-380)||(38438-38563)
scaffold0017 (337-377)||(128664-128704)
[»] chr8 (14 HSPs)
chr8 (260-380)||(16752121-16752240)
chr8 (260-380)||(40541732-40541852)
chr8 (255-380)||(26575017-26575143)
chr8 (260-323)||(2040273-2040336)
chr8 (262-380)||(1018082-1018199)
chr8 (258-334)||(15761255-15761332)
chr8 (262-346)||(3094143-3094228)
chr8 (255-327)||(8582205-8582278)
chr8 (261-313)||(24056470-24056523)
chr8 (244-326)||(26879737-26879821)
chr8 (255-314)||(30240264-30240324)
chr8 (255-341)||(11879749-11879835)
chr8 (255-341)||(11897165-11897251)
chr8 (255-341)||(29384206-29384297)
[»] scaffold0163 (1 HSPs)
scaffold0163 (257-380)||(2875-2997)
[»] scaffold0182 (1 HSPs)
scaffold0182 (261-380)||(24480-24602)
[»] scaffold0526 (1 HSPs)
scaffold0526 (260-375)||(8260-8373)
[»] scaffold0603 (1 HSPs)
scaffold0603 (260-348)||(8858-8947)
[»] scaffold0079 (1 HSPs)
scaffold0079 (260-309)||(14838-14887)
[»] scaffold0259 (1 HSPs)
scaffold0259 (244-333)||(18540-18630)
[»] scaffold0061 (1 HSPs)
scaffold0061 (260-341)||(76220-76306)
[»] scaffold2084 (1 HSPs)
scaffold2084 (260-305)||(1-46)
[»] scaffold0048 (1 HSPs)
scaffold0048 (316-379)||(48616-48679)
[»] scaffold0186 (1 HSPs)
scaffold0186 (255-346)||(8587-8676)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 18404010 - 18403560
Alignment:
Q  8 ggaatgtgatgatgacatatatgtgtttaaatctctttcggtataaagtctcaaaattctgataaatacgaatttgaagtctcttgaatgacaacagttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18404010 ggaatgtgatgatgacatatatgtgtttaaatctctttcggtataaagtcacaaaattctgataaatacgaatttgaagtctcttgaatgacaacagttt 18403911  T
Q  108 aaattaagacttattgtcaattttagctgctcaaaatagatctaatcaaggttctcaaaatcagaattttacttcaggtagtaagggaaatgcaaaatcg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  18403910 aaattaagacttattgtcaattttagctgctcaaaatagatctaatcaaggttctcaaaatcagaattttacttcaggtagtaatggaattgaaaaatcg 18403811  T
Q  208 taaataataaaattgcgatcaaaatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgt 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18403810 taaataataaaattgcaatcaaaatcgatatagcatagcaaaattataaataataaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgt 18403711  T
Q  308 taaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataactcaaaggatgatggattgaaggaaag 407  Q
    ||||||| |||||||||||| |||||||||| || |||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||    
T  18403710 taaatatatgttataaattgtatatagtcatgaatgactcaaa-ttcaaagtccacaaaataaatatacataattcaaaggacgatggattgaaggaaag 18403612  T
Q  408 agccaatgtagttaggtttagttcattttgaactagatgaactggagttctc 459  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  18403611 agccaatctaattaggtttagttcattttgaactagatgaactggagttctc 18403560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 55476205 - 55476086
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  55476205 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgcaaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagt 55476107  T
Q  360 ccacaaaatacatatacataa 380  Q
     ||||||||||||||||||||    
T  55476106 acacaaaatacatatacataa 55476086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 8409810 - 8409720
Alignment:
Q  261 taaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaag 351  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||    
T  8409810 taaaatcgtaatcaaaatcgaggattctaccaaaacaaaaataatgctaaatatatgttataaattacatatagtcataaatgactcaaag 8409720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 8011030 - 8011154
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||| |||||||||||| ||||| | ||||| || |   ||||    
T  8011030 aaattgtaaaatcgcaatcaaaatcgatgtattttaccaaaacaaaaataatgctaaatatatgttataaattgtatataattataaatgaat--tagtt 8011127  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     |||||||||||||||| |||||||||    
T  8011128 taaagtccacaaaatacttatacataa 8011154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 24719810 - 24719723
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaaga-ttctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| |||||||||||||||||||||| || || ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  24719810 aaatcgtaaaatcgcaatcaaaatcgatgagttttaccaaagcaaaaataatgttaaatatatgttataaattgtatatagtcataaa 24719723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 8020714 - 8020778
Alignment:
Q  273 caaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtca 337  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8020714 caaaattgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtca 8020778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 333
Target Start/End: Complemental strand, 8367448 - 8367344
Alignment:
Q  231 atcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaaca-aaaataatgttaaatatgtgttat-aaattgc 328  Q
    |||||||||| |||||||||| |||||| ||||||| ||||| |||||||| ||||||||||||||| ||||||||| ||||||| |||||| ||||| |    
T  8367448 atcgatataggatagcaaaatcataaattgtaaaattgcaattaaaatcgaggattctaccaaaacaaaaaataatgctaaatatatgttatgaaatttc 8367349  T
Q  329 atata 333  Q
    |||||    
T  8367348 atata 8367344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 7044998 - 7044874
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| |||||||  ||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| |||||  ||||    
T  7044998 aaatcgtaaaatatcaatcaaaatcgatggattttaccaaaacaaaaataatgttaaacatgtgttataatttgtatatagtgataaatgactc--agtt 7044901  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     |||||| |||| |||| |||||||||    
T  7044900 taaagtcgacaagatacttatacataa 7044874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 8743708 - 8743797
Alignment:
Q  291 caaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||||| |||| |||||||   ||||||||||| ||||||||||| |||||| ||||||||| | |||||||    
T  8743708 caaaacaaaaataatgttaaatatatgttttaaattgttcatagtcataaatgactcaaagtttaaagtctacaaaatacttgtacataa 8743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 8409551 - 8409491
Alignment:
Q  388 gatgatggattgaaggaaagagccaatgtagttaggtttagttcattttgaactagatgaa 448  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  8409551 gatgatggattgaaggaaggaggcaatctagttaggtttagttcattttgaactagatgaa 8409491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 9149624 - 9149741
Alignment:
Q  262 aaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtc 360  Q
    |||| |||||||||||| || ||||| |||||||| |||||||||| ||||||| |||||||||||| ||||||| ||||| |||||  || | ||||||    
T  9149624 aaaaacgcaatcaaaattgatagattttaccaaaagaaaaataatgctaaatatatgttataaattgtatatagttataaatgactc--agcttaaagtc 9149721  T
Q  361 cacaaaatacatatacataa 380  Q
    || ||||||| |||||||||    
T  9149722 caaaaaatacttatacataa 9149741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 20812759 - 20812638
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatg--tgttataaattgcatatagtcataaacgactcaaagttcaaa 357  Q
    ||||||||||||||| ||||||| |||||||||||| |||| ||||| |||||||   | ||||||| |||||||||||||||| |||||||||||  ||    
T  20812759 taaaatcgcaatcaagatcgaaggattctaccaaaagaaaa-taatgctaaatataaatattataaagtgcatatagtcataaatgactcaaagtttcaa 20812661  T
Q  358 gtccacaaaatacatatacataa 380  Q
    ||| ||||||||| |||| ||||    
T  20812660 gtctacaaaatacttataaataa 20812638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 6346849 - 6346943
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactca 348  Q
    |||| |||||||||||||||||||||| | |||  |||||||||||||||||| ||||||| |||||||||||| |||||  |||||| ||||||    
T  6346849 aaattgtaaaatcgcaatcaaaatcgatggatttcaccaaaacaaaaataatgataaatatatgttataaattgtatatatgcataaatgactca 6346943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 4157087 - 4156964
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| |||||||||||||||||||||| | ||| ||| ||||||||||||||||| ||||| |||||| ||||| ||||||| ||||| || ||   |||    
T  4157087 aaatcgtaaaatcgcaatcaaaatcgatggattttactaaaacaaaaataatgttgaatatatgttat-aattgtatatagtgataaatgattc--ggtt 4156991  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     ||||| |||||||||| |||||||||    
T  4156990 taaagttcacaaaatacttatacataa 4156964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 5846050 - 5846111
Alignment:
Q  292 aaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    ||||||||||||||| ||||||| |||||||||||| |||| |||||||| |||||||||||    
T  5846050 aaaacaaaaataatgctaaatatatgttataaattgtatattgtcataaatgactcaaagtt 5846111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 7045143 - 7045083
Alignment:
Q  288 taccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactca 348  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||| ||||||    
T  7045143 taccaaaacaaaaataatgttaaatatatgttataatttgtatatagtgataaatgactca 7045083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 22060666 - 22060749
Alignment:
Q  297 aaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||| ||||||| ||| |||||||| || |||||||||| |  ||||||||  ||||||||||||||| |||||||||    
T  22060666 aaaaataatgctaaatatatgtaataaattgtatgtagtcataaatgtatcaaagtttcaagtccacaaaatacttatacataa 22060749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 7825239 - 7825161
Alignment:
Q  300 aataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    ||||||| ||||||   ||||||||||| ||||||||||||| |||||  |||| |||||||||||||||| |||||||||    
T  7825239 aataatgctaaatacaagttataaattgtatatagtcataaatgactc--agtttaaagtccacaaaatacttatacataa 7825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 380
Target Start/End: Original strand, 18459546 - 18459634
Alignment:
Q  290 ccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    ||||||||||| ||| | ||||||| |||||| || || ||||||||||||| |||||   ||| |||||||||||||||| |||||||||    
T  18459546 ccaaaacaaaagtaacgctaaatatatgttatgaactgtatatagtcataaatgactc--ggtttaaagtccacaaaatacttatacataa 18459634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 350
Target Start/End: Original strand, 5884162 - 5884283
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgc 328  Q
    |||| |||||| |||| ||||||  ||||  ||||||| |||||||||| || | ||| ||| ||||||||| ||||| ||||  | |||||||||||||    
T  5884162 aatcaatataggatagaaaaattcaaaatcataaaatcacaatcaaaatagatggattttacaaaaacaaaagtaatgctaaaagtatgttataaattgc 5884261  T
Q  329 atatagtcataaacgactcaaa 350  Q
    |||| |||||||| || |||||    
T  5884262 atattgtcataaatgattcaaa 5884283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 7045299 - 7045218
Alignment:
Q  154 caaggttctcaaaatcagaattttacttcaggtagtaagggaaatgcaaaatcgtaaataataaaattgcgatcaaaatcga 235  Q
    ||||||| |||||||  |||||||||||||||| | |||||||  ||||||||  |||| ||||||| || |||||||||||    
T  7045299 caaggttgtcaaaataggaattttacttcaggtcgaaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcga 7045218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 7815819 - 7815758
Alignment:
Q  317 gttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    ||||||||||| ||||||||||||| |||||  |||| |||||||||| ||||| |||||||||    
T  7815819 gttataaattgtatatagtcataaatgactc--agtttaaagtccacataatacttatacataa 7815758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 8889463 - 8889372
Alignment:
Q  253 ataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||||| |||||||||||||||||||||| | ||| |||||| | |||||||    ||||||| | |||||||| | ||||||||||||||||||    
T  8889463 ataaattgtaaaatcgcaatcaaaatcgatgaattttaccaacaaaaaaata---ctaaatatatattataaatggtatatagtcataaacgact 8889372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 10394812 - 10394768
Alignment:
Q  288 taccaaaacaaaaataatgttaaatatgtgttataaattgcatat 332  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||    
T  10394812 taccaaaacaaaaataatggtaaatatatgttataaattgtatat 10394768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 17466314 - 17466223
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||| |||||||||||||| | ||| ||| | || ||||||||| |||||||| |||||||||| | ||||||||||||| ||||    
T  17466314 aaattgtaaaattgcaatcaaaatcgatggattttacaacaa-aaaaataatattaaatatatgttataaatggtatatagtcataaatgact 17466223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 375
Target Start/End: Original strand, 5943170 - 5943259
Alignment:
Q  283 gattctaccaaaacaaaaataatgttaaatat-gtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatata 375  Q
    |||| |||||||| ||||||||||||||||||  |||||||||||   |||||||||||| ||  ||||||| ||||| |||||||||| ||||    
T  5943170 gattttaccaaaataaaaataatgttaaatataatgttataaatt--ttatagtcataaatga--caaagtttaaagtgcacaaaatacttata 5943259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 7803263 - 7803207
Alignment:
Q  322 aaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||| ||||||||||||| ||||||  ||| |||||||||||||||| |||||||||    
T  7803263 aaattgtatatagtcataaatgactca--gtttaaagtccacaaaatacttatacataa 7803207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 27528004 - 27527946
Alignment:
Q  283 gattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    ||||||||||||  |||||||||| ||| ||| |||| |||||||||||||||| ||||    
T  27528004 gattctaccaaataaaaaataatgctaactatatgttgtaaattgcatatagtcgtaaa 27527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 46664210 - 46664269
Alignment:
Q  262 aaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaat 325  Q
    ||||||||||||||||||    |||| |||||||||||||||||| ||||||| | ||||||||    
T  46664210 aaaatcgcaatcaaaatc----attccaccaaaacaaaaataatgctaaatatatattataaat 46664269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 10143213 - 10143172
Alignment:
Q  242 atagcaaaattataaatagtaaaatcgcaatcaaaatcgaag 283  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  10143213 atagcaaaattaacaatcgtaaaatcgcaatcaaaatcgaag 10143172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 36121058 - 36120968
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  |||| |||||||  || ||||||  ||||||| | |||||||| | ||||||||||||| ||||    
T  36121058 aaattgtaaaatcgcaatcaaaatcgatggattttaccaaa--aataataatactaaatatattttataaatggtatatagtcataaatgact 36120968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 9911305 - 9911396
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  || | |||||||| || ||||||  | ||||| |||||||||| | ||||||||||||| ||||    
T  9911305 aaattgtaaaatcgcaatcaaaatcgatggactttaccaaaa-aataataatacttaatatatgttataaatggtatatagtcataaatgact 9911396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 230 - 449
Target Start/End: Original strand, 22984683 - 22984906
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    ||||||||||| ||||||||||   | || |||||||  ||||||||||||| ||||||||||| |  ||||||||| ||||||| ||||||||||||||    
T  22984683 aatcgatataggatagcaaaatcccatatcgtaaaattccaatcaaaatcgaggattctaccaatagtaaaataatgctaaatatatgttataaattgca 22984782  T
Q  330 tatagtcataaacgactcaaagttcaaagtccacaaaatacatatacata----actcaaaggatgatggattgaaggaaagagccaatgtagttaggtt 425  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||||||    ||||||||| |||||||||||||||||||| |||| |||||||| |    
T  22984783 tatagtcatagatgactcaaagttcaaattccacaaaatacatatacataaatgactcaaaggttgatggattgaaggaaagaggcaatctagttaggct 22984882  T
Q  426 tagttcattttgaactagatgaac 449  Q
    ||||||||||| ||||||||||||    
T  22984883 tagttcattttcaactagatgaac 22984906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 230 - 380
Target Start/End: Complemental strand, 41427666 - 41427516
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    ||||||||||| ||||||||||    ||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||    
T  41427666 aatcgatataggatagcaaaatagggaattgtaaaattgcaatcaaaatcgaggattctaccaaaacaaaaataatgataaatatatattataaattgca 41427567  T
Q  330 tatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  41427566 tatagtcataaatgacttaaagttcaaagtccacaaaatacatatacataa 41427516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 19377807 - 19377710
Alignment:
Q  283 gattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  19377807 gattctacaaaaacaaaaataatgttaaatatatgttataaattggatatagtcataaatgacttaaagttcaaagtccacaaaatacatatacataa 19377710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 15052003 - 15052081
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcat 338  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15052003 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcat 15052081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 285 - 380
Target Start/End: Original strand, 187809 - 187903
Alignment:
Q  285 ttctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||  ||| ||||||| |||||||||||||| ||||||||||    
T  187809 ttctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtaataaataact-aaagttcgaagtccacaaaatatatatacataa 187903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 230 - 380
Target Start/End: Complemental strand, 15446459 - 15446308
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgc 328  Q
    ||||||||||  ||||||||||   || | |||||||||||||||||||||| | |||||| |||||||||||||| | ||||||| |||||| ||||||    
T  15446459 aatcgatataagatagcaaaatcgaaactcgtaaaatcgcaatcaaaatcgatggattctatcaaaacaaaaataacgataaatatatgttatcaattgc 15446360  T
Q  329 atatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    | | | ||||||| ||||||||||| |||||||||||| ||| | |||||||    
T  15446359 acacactcataaatgactcaaagtttaaagtccacaaattacttgtacataa 15446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 24648245 - 24648128
Alignment:
Q  262 aaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtc 360  Q
    |||||||||||||||||||  | ||| ||| |||||| |||||||| ||||||| | |||||||||| ||||||||||||| |||||||  || ||||||    
T  24648245 aaaatcgcaatcaaaatcggtggattttactaaaacataaataatgctaaatatatattataaattgtatatagtcataaatgactcaa--tttaaagtc 24648148  T
Q  361 cacaaaatacatatacataa 380  Q
    |||||||||| |||||||||    
T  24648147 cacaaaatacttatacataa 24648128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 43005753 - 43005840
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| ||||||||||||| |||||||| | ||| ||||||||||||||||||| ||||||| |||||||||||| ||| | |||||||    
T  43005753 aaatcgtaaaatcgcaattaaaatcgatggattgtaccaaaacaaaaataatgctaaatatatgttataaattgtatacactcataaa 43005840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 19377427 - 19377362
Alignment:
Q  384 aaaggatgatggattgaaggaaagagccaatgtagttaggtttagttcattttgaactagatgaac 449  Q
    |||||||||||||||||||||| ||  |||| |||||||||||| ||||||||||| |||||||||    
T  19377427 aaaggatgatggattgaaggaaggaagcaatttagttaggtttacttcattttgaattagatgaac 19377362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 26021522 - 26021462
Alignment:
Q  288 taccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactca 348  Q
    ||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||| ||||||    
T  26021522 taccaaaacaataataatgctaaatatatgttataaattgtatatagtcataaatgactca 26021462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 30804158 - 30804034
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaaga-ttctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| ||||||||||||| ||||||   || || ||||||||||||||||||| ||||||| | |||| |||| |||||||||||||| |||||  ||||    
T  30804158 aaatggtaaaatcgcaatgaaaatcattgaattgtaccaaaacaaaaataatgctaaatatttattatgaattacatatagtcataaatgactc--agtt 30804061  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
      || || ||||||||| |||||||||    
T  30804060 tcaattctacaaaatacttatacataa 30804034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 9996882 - 9996959
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtc 336  Q
    |||||||  ||||||||||||| | ||| ||||||||||||||||||| | ||||| ||||||||||||| |||||||    
T  9996882 gtaaaattacaatcaaaatcgatggattttaccaaaacaaaaataatgcttaatatatgttataaattgcttatagtc 9996959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 19579178 - 19579086
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  |||| |||||||| |||||||||   |||||| |||||| ||| | | ||||||||||| ||||    
T  19579178 aaattgtaaaatcgcaatcaaaatcgatggattttaccaaaaaaaaaataataccaaatatatgttatgaatggtaaatagtcataaatgact 19579086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 23172322 - 23172413
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||||||||||||||||||| | ||| |||| ||| |||| |||| |||||||| ||||| |||| | ||||||||||||| ||||    
T  23172322 aaattgtaaaatcgcaatcaaaatcgatgaattttacccaaa-aaaattaatattaaatatatgttacaaatggtatatagtcataaatgact 23172413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 13341579 - 13341630
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcga 281  Q
    ||||||||||| |||||||||| | ||||  |||||||||||||||||||||    
T  13341579 aatcgatataggatagcaaaatcaaaaattttaaaatcgcaatcaaaatcga 13341630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 13348822 - 13348876
Alignment:
Q  283 gattctaccaaaacaaaaataatgtt-aaatatgtgttataaattgcatatagtc 336  Q
    ||||||| ||||| |||||||||||| |||||| | |||||||||||||||||||    
T  13348822 gattctatcaaaataaaaataatgttaaaatatatattataaattgcatatagtc 13348876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 29270302 - 29270241
Alignment:
Q  316 tgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||| |||||||||||||||||||||  |||||||||  ||||| |||||||||| |||||||||    
T  29270302 tgttttaaattgcatatagtcataaattactcaaagt--aaagt-cacaaaatacttatacataa 29270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 18843950 - 18843859
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  |||| |||| ||| |||| ||||  ||||||| |||||||||| | ||||| ||||||| ||||    
T  18843950 aaattgtaaaatcgcaatcaaaatcgatggattttacccaaa-aaaattaatactaaatatatgttataaatggtatataatcataaatgact 18843859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 20321178 - 20321086
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  |||| |||| | | |||| |||| |||||||| ||||||||||   |||| |||||||| ||||    
T  20321178 aaattgtaaaatcgcaatcaaaatcgatggattttacccagaaaaaattaatattaaatatatgttataaatgatatatggtcataaatgact 20321086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 41688560 - 41688645
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| |||||||||||||||||||||| | ||| |||||||  |||||||||  ||||||| |||||| ||| | ||||||| |||||    
T  41688560 aaattgtaaaatcgcaatcaaaatcgatgaattttaccaaa--aaaaataatactaaatatatgttatgaatggtatatagttataaa 41688645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 974555 - 974435
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  974555 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgacttaaagttcaaagt 974456  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  974455 ccacaaaatacatatacataa 974435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 41002242 - 41002123
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  41002242 gtaaaatcgtaatcaaaatcgaggattctaccaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagt 41002144  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  41002143 ccacaaaatacatatacataa 41002123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 34578106 - 34577989
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||| ||||||||||||    
T  34578106 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgc--atagtcataaatgact-aaagttcaaagt 34578010  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  34578009 ccacaaaatacatatacataa 34577989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 21869233 - 21869353
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||  ||| ||||||||||||    
T  21869233 gtaaaatcccaatcaaaatcgatgattctaccaaaacaaaaattatgctaaatatatgttataaattgcatatagtcataaataacttaaagttcaaagt 21869332  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  21869333 ccacaaaatacatatacataa 21869353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 7302002 - 7301885
Alignment:
Q  262 aaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtcc 361  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||    
T  7302002 aaaatcgcaatcaaaatcgaggattctaccaaaataaaaataatgttaaatatatgttataaattgcatatggtcataaatgact-aaagttcaaagtcc 7301904  T
Q  362 acaaaatacatatacataa 380  Q
    ||||||||||||| |||||    
T  7301903 acaaaatacatatgcataa 7301885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 372
Target Start/End: Original strand, 20034134 - 20034245
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |    
T  20034134 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatactcataaatgact-aaagttcaaaat 20034232  T
Q  360 ccacaaaatacat 372  Q
    |||||||||||||    
T  20034233 ccacaaaatacat 20034245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 260 - 375
Target Start/End: Original strand, 27524008 - 27524122
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| || | ||||||||||||    
T  27524008 gtaaaattgcaatcaaaatcgagggttctaccaaaacaaaaataatgttaaatatatattataaattgcatatattcataaatga-ttaaagttcaaagt 27524106  T
Q  360 ccacaaaatacatata 375  Q
    ||||||||||||||||    
T  27524107 ccacaaaatacatata 27524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 26251746 - 26251623
Alignment:
Q  260 gtaaaatcgcaatcaaaatcga-agattctaccaaaa-caaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactc-aaagttcaa 356  Q
    ||||||| |||||||||||||  |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||  |    
T  26251746 gtaaaattgcaatcaaaatcggtagattctaccaaaatcaaaaataatggtaaatatatgttataaattgcatatagtcataaatgactcaaaagtttca 26251647  T
Q  357 agtccacaaaatacatatacataa 380  Q
    |||||||||||||| |||| ||||    
T  26251646 agtccacaaaatacctataaataa 26251623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 370
Target Start/End: Complemental strand, 19245791 - 19245704
Alignment:
Q  283 gattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatac 370  Q
    ||||||||||||| |||||||||||||||||| || || ||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  19245791 gattctaccaaaataaaaataatgttaaatatatgatagaaattgcatgtagtcataaatgactcaaagtttaaagtccacaaaatac 19245704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 25539039 - 25539163
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||| |||||||| ||||||| ||||||| |||| ||||||||||||| |||||  ||||    
T  25539039 aaattgtaaaattgcaatcaaaatcgatagattttaccaaaacagaaataatgctaaatatatgttatatattgtatatagtcataaatgactc--agtt 25539136  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     |||||||||||||||| |||| ||||    
T  25539137 taaagtccacaaaatacttataaataa 25539163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 16767020 - 16766910
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttc 354  Q
    |||| |||||||||||||||||||| |||  | ||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||| |||||  ||||     
T  16767020 aaatcgtaaaatcgcaatcaaaatcaaaggatttaccaaaacaaaaataatgctaaatatttgttataaattgtatacagtcataaatgactc--agttt 16766923  T
Q  355 aaagtccacaaaa 367  Q
    |||||||||||||    
T  16766922 aaagtccacaaaa 16766910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 380
Target Start/End: Complemental strand, 19519637 - 19519490
Alignment:
Q  227 caaaatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaat 325  Q
    |||||||||||||  ||| |||||||  |||| ||||||||||||||||||| || ||||||||| ||||| ||||||||| ||||||| ||||||||||    
T  19519637 caaaatcgatatatgataacaaaattgaaaatcgtaaaatcgcaatcaaaattgatagattctacaaaaaccaaaataatgctaaatatatgttataaat 19519538  T
Q  326 tgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||       ||||||||||||||  |||| |||||||||| || ||||||    
T  19519537 tgcatat-------aacgactcaaagtttcaagttcacaaaatacttaaacataa 19519490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 379
Target Start/End: Complemental strand, 24474056 - 24473931
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| |||||||| |||| |||||||  | ||||||||||||||||| ||||| ||||||  || ||||||||||||||||| ||||| |||| ||||||    
T  24474056 aaattgtaaaatcacaattaaaatcgttggattctaccaaaacaaaattaatgataaatagatgatataaattgcatatagttataaatgactaaaagtt 24473957  T
Q  354 caaagtccacaaaatacatatacata 379  Q
     ||| |||||||||||| ||||||||    
T  24473956 aaaattccacaaaatacttatacata 24473931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 27407020 - 27406902
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||| || | |||  |||||||||||||||||| ||||||| | ||||||| || ||||||| ||||| |||||  |||| |||||    
T  27407020 taaaatcgcaatcaaaattgatggatttcaccaaaacaaaaataatgctaaatatatattataaactgtatatagtaataaatgactc--agtttaaagt 27406923  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  27406922 ccacaaaatacatatacataa 27406902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 367
Target Start/End: Complemental strand, 34841816 - 34841705
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| |||||||||||||||||||||| | |||||| | |||||||||||||  ||||||| |||||||||||| |||||||||||||  ||||  ||||    
T  34841816 aaatcgtaaaatcgcaatcaaaatcgatggattctatccaaacaaaaataataataaatatatgttataaattgtatatagtcataaataactc--agtt 34841719  T
Q  354 caaagtccacaaaa 367  Q
     |||||||||||||    
T  34841718 taaagtccacaaaa 34841705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 27749717 - 27749781
Alignment:
Q  316 tgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  27749717 tgttataaattgcatgtagtcataaatgactcaaagttcaaagtctacaaaatacatacacataa 27749781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 5395430 - 5395530
Alignment:
Q  269 caatcaaaatcgaa-gattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaa 367  Q
    |||||||||||||| |||| ||||||||||||||||||||| || || |||||||||||| ||||||||||||| ||| |||  || ||||||||| |||    
T  5395430 caatcaaaatcgaaagattttaccaaaacaaaaataatgttcaaaatatgttataaattgtatatagtcataaatgacccaa--tttaaagtccaccaaa 5395527  T
Q  368 tac 370  Q
    |||    
T  5395528 tac 5395530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 19492177 - 19492043
Alignment:
Q  246 caaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaa-aataatgttaaatatgtgttataaattgcatatagtcataaacg 343  Q
    |||||||| |||| |||||| || |||||||||||| | ||| |||||||| ||| ||||||| ||||||| |||||||||||| |||||||||||||      
T  19492177 caaaattaaaaatcgtaaaaccgtaatcaaaatcgatggattttaccaaaaaaaataataatgctaaatatatgttataaattgtatatagtcataaata 19492078  T
Q  344 actcaaagttcaaagtccacaaaatacatatacataa 380  Q
    ||||   ||| |||||||||| ||||| |||||||||    
T  19492077 actc--tgtttaaagtccacagaatacttatacataa 19492043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 13502567 - 13502638
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaat 325  Q
    |||| |||||||||||||||||||||| | ||| |||||||||||||||||| |||||||| ||||||||||    
T  13502567 aaatcgtaaaatcgcaatcaaaatcgatggattttaccaaaacaaaaataatattaaatatatgttataaat 13502638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 31023531 - 31023449
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaac 342  Q
    |||||||| |||||||||||| | ||| |||||||| |||||||||||||||||| |||||||||| | | ||||||||||||    
T  31023531 taaaatcgtaatcaaaatcgatggattttaccaaaataaaaataatgttaaatatatgttataaatagtaaatagtcataaac 31023449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 1690627 - 1690713
Alignment:
Q  260 gtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||||||||||||||||||||| | ||| |||||||| || |||||| |||||||| | |||||||| | ||||||||||||| ||||    
T  1690627 gtaaaatcgcaatcaaaatcgataaattttaccaaaa-aataataatattaaatatattttataaatggtatatagtcataaaagact 1690713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 8428457 - 8428370
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaaga-ttctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| |||||||||||||  ||||||| || || ||||||||||||||||||| ||| ||| | |||||||||  |||||||||||||    
T  8428457 aaatcgtaaaatcgcaatacaaatcgatgaattataccaaaacaaaaataatgctaactatatattataaattatatatagtcataaa 8428370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 27749416 - 27749474
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaata 313  Q
    |||| |||||||| | || |||| ||| |||||||||||||||||||||||| ||||||    
T  27749416 aaatcgtaaaatcacgataaaaaacgaggattctaccaaaacaaaaataatgctaaata 27749474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 35565857 - 35565939
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    ||||||| ||||||||||||| | ||| |||||||| ||||||| |   |||||| |||||||||||| ||||||||||||| ||||    
T  35565857 taaaatcacaatcaaaatcgatggattttaccaaaa-aaaaatact---aaatatatgttataaattgtatatagtcataaatgact 35565939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 25842643 - 25842762
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  25842643 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagt 25842741  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||| ||||||    
T  25842742 ccacaaaatacatacacataa 25842762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 1981235 - 1981354
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  1981235 gtaaaattgcaatcaaaatcgaggattctatcaaaacaaaaataatgctaaatatatgttataaattgcatatagtcataaatgact-aaagttcaaagt 1981333  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  1981334 ccacaaaatacatatacataa 1981354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 23618341 - 23618460
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||    
T  23618341 gtaaaatcgtaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatattataaattgcatatagtcataaatgact-aaagttcaaagt 23618439  T
Q  360 ccacaaaatacatatacataa 380  Q
    | |||||||||||||||||||    
T  23618440 ctacaaaatacatatacataa 23618460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 230 - 356
Target Start/End: Complemental strand, 7307257 - 7307132
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    ||||||||||| ||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  7307257 aatcgatataggatagcaaaatcgcaaatcgtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatatg-tataaattgca 7307159  T
Q  330 tatagtcataaacgactcaaagttcaa 356  Q
    ||||||| |||| ||||||||||||||    
T  7307158 tatagtcgtaaatgactcaaagttcaa 7307132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 8629610 - 8629757
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    |||||||| || |||| ||||| |||||| |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||     
T  8629610 aatcgatacaggatagtaaaatcataaatcgtaaaatcgcaatcaaaaccgaggattctaccaaaacaaaaataatgctaaatatatgttataaattgc- 8629708  T
Q  330 tatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
     |||||||||||   || ||| |||||||||||||||||||||||||||||    
T  8629709 -atagtcataaatatcttaaa-ttcaaagtccacaaaatacatatacataa 8629757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 8254018 - 8254140
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatag---tcataaacgactcaaagttcaa 356  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||| |||| |||||||||    
T  8254018 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcatcataaatgact-aaagttcaa 8254116  T
Q  357 agtccacaaaatacatatacataa 380  Q
    |||  ||||||||||||| |||||    
T  8254117 agtgaacaaaatacatatgcataa 8254140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 380
Target Start/End: Complemental strand, 8304329 - 8304182
Alignment:
Q  234 gatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgtt--aaatatgtgttataaattgcata 331  Q
    ||||||| |||||||||||  || |  |||||| |||||||||||||| ||||||||||||||||||||||| ||  |||||| ||||||||||||||||    
T  8304329 gatataggatagcaaaattggaactcataaaattgcaatcaaaatcgaggattctaccaaaacaaaaataattttaaaaatatatgttataaattgcata 8304230  T
Q  332 tagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||| | || ||||||||||||||| ||||| |||||| ||||    
T  8304229 tagtcataaatgtct-aaagttcaaagtccaaaaaatgcatatatataa 8304182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 17808990 - 17809115
Alignment:
Q  224 gatcaaaatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttata 322  Q
    ||||||||| || || | ||||||||||   |||| |||||||||||||||||||  | ||||||||||||||||||||||||| ||||||| |||||||    
T  17808990 gatcaaaattgaaatggaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaattcatagattctaccaaaacaaaaataatgctaaatatatgttata 17809089  T
Q  323 aattgcatatagtcataaacgactca 348  Q
    ||||||||||| ||||||| ||||||    
T  17809090 aattgcatataatcataaatgactca 17809115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 26565442 - 26565565
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| ||||||| ||||||||||| || | ||| ||||||||||||||||||||| ||||| ||||||||| || ||||||||||||| |||||  ||||    
T  26565442 aaatcgtaaaattgcaatcaaaattgatggattttaccaaaacaaaaataatgtt-aatatatgttataaactgtatatagtcataaatgactc--agtt 26565538  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     |||||||||||||||| |||||||||    
T  26565539 taaagtccacaaaatacttatacataa 26565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 4574977 - 4574878
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgc 328  Q
    ||||||||||| |||| ||||||  |||| ||||||||||| |||||||||| ||||| |||||||| |||||||||| | ||||| |||||||||||||    
T  4574977 aatcgatataggatagtaaaattgaaaatcgtaaaatcgcagtcaaaatcgatagattttaccaaaataaaaataatgcttaatatatgttataaattgc 4574878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 21157606 - 21157700
Alignment:
Q  283 gattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||||||||| ||||| ||||||| |||||||||| | ||||| || |||| |||||   ||| |||||| ||||||||| |||||||||    
T  21157606 gattctaccaaaacaaaagtaatgctaaatatatgttataaatggtatataatcgtaaatgactc---gtttaaagtctacaaaatacttatacataa 21157700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 44944739 - 44944830
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||||||||||||||||||| ||| | |||||||| || ||||||  ||||||| |||||||||| | ||||||||||||| ||||    
T  44944739 aaattgtaaaatcgcaatcaaaatcgatagactttaccaaaa-aataataatactaaatatatgttataaatggtatatagtcataaatgact 44944830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 30294475 - 30294408
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattg 327  Q
    ||||||| |||||||| |||| | ||| |||||||||||| |||||||||||||| ||||||||||||    
T  30294475 taaaatcacaatcaaactcgatggattttaccaaaacaaagataatgttaaatatatgttataaattg 30294408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 448
Target Start/End: Original strand, 1981469 - 1981530
Alignment:
Q  387 ggatgatggattgaaggaaagagccaatgtagttaggtttagttcattttgaactagatgaa 448  Q
    ||||||||||||||||||| ||| |||| | |||| |||||| || ||||||||||||||||    
T  1981469 ggatgatggattgaaggaaggaggcaatctggttaagtttagctctttttgaactagatgaa 1981530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 26340254 - 26340331
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatg 306  Q
    ||||||||||  |||  ||||||  |||| |||||||| ||||||||||||| | |||||||||||||||||||||||    
T  26340254 aatcgatataagatataaaaattgaaaatcgtaaaatcacaatcaaaatcgataaattctaccaaaacaaaaataatg 26340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 5058764 - 5058673
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||||||||||||||||||| | | | |||||||| || ||||||  ||||||| |||||||||| | ||||||||||||| ||||    
T  5058764 aaattgtaaaatcgcaatcaaaatcgatggactttaccaaaa-aataataatactaaatatatgttataaatggtatatagtcataaatgact 5058673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 48621593 - 48621651
Alignment:
Q  295 acaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    ||||||| |||| ||||||| |||||| |||| |||| ||||||||| |||||||||||    
T  48621593 acaaaaacaatgataaatatttgttatgaattacatacagtcataaatgactcaaagtt 48621651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 8303784 - 8303723
Alignment:
Q  388 gatgatggattgaaggaaagagccaatgtagttaggtttagttcattttgaactagatgaac 449  Q
    |||||||||||||||||| |||  ||| ||||||  ||||||||||||||||| ||| ||||    
T  8303784 gatgatggattgaaggaaggaggtaatctagttacatttagttcattttgaaccagaagaac 8303723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 234 - 445
Target Start/End: Complemental strand, 142872 - 142659
Alignment:
Q  234 gatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatata 333  Q
    ||||||| ||||||||||   ||||  ||||||| ||||||||||||| ||||| ||||||   ||||||||| ||||||| ||||||||||||||||||    
T  142872 gatataggatagcaaaatcccaaattctaaaatctcaatcaaaatcgaggattcgaccaaac--aaaataatgctaaatatatgttataaattgcatata 142775  T
Q  334 gtcataaacgactcaaagttcaaagtccacaaaatacatatacata----actcaaaggatgatggattgaaggaaagagccaatgtagttaggtttagt 429  Q
    |||| ||| || ||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||  | |||| ||||| ||| ||||    
T  142774 gtcaaaaatgattcaaagttcaaagtccaaaaaatacatatacataaatgactcaaaggatgatggattgaaggaaaacggcaatctagtttggtctagt 142675  T
Q  430 tcattttgaactagat 445  Q
    | ||||||||||||||    
T  142674 ttattttgaactagat 142659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 230 - 380
Target Start/End: Complemental strand, 27890633 - 27890483
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    ||||||||||| |||||||||| |  | | ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  27890633 aatcgatataggatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgagaattctaccaaaacaaaaataatgctaaatatatgttataaattgca 27890534  T
Q  330 tatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||| || | |||||||||||||||||||||||||||| ||||    
T  27890533 tatagtcataaatgagttaaagttcaaagtccacaaaatacatatatataa 27890483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 234 - 380
Target Start/End: Complemental strand, 31407552 - 31407405
Alignment:
Q  234 gatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatat 332  Q
    |||||||  ||||||||| | |||| |||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31407552 gatatagggtagcaaaatcaaaaatcgtaaaatcacaatcaaagtcgacgcattctaccaaaacaaaaataatgttaaatatatgttataaattgcatat 31407453  T
Q  333 agtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
     |||||||| ||||||||||| ||| |||||||||||| |||||||||    
T  31407452 tgtcataaatgactcaaagtttaaattccacaaaatacttatacataa 31407405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 242 - 380
Target Start/End: Complemental strand, 31108390 - 31108254
Alignment:
Q  242 atagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    ||||||||||  ||||| |||||||||||||||||||||| ||||||| |||||||||| ||| | ||||||  |||||||||||||  |||||||||||    
T  31108390 atagcaaaatcgtaaatcgtaaaatcgcaatcaaaatcgaggattctaacaaaacaaaagtaaagctaaatacatgttataaattgc--atagtcataaa 31108293  T
Q  342 cgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
     |||| |||||||||||||| ||||||||||||||||||    
T  31108292 tgacttaaagttcaaagtccgcaaaatacatatacataa 31108254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 234 - 380
Target Start/End: Original strand, 33593036 - 33593183
Alignment:
Q  234 gatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatat 332  Q
    ||||||| |||||||||| | ||||  ||||||||||||||||||||| | |||||||||||| ||||||||||||||| || |||||||||||||||||    
T  33593036 gatataggatagcaaaatcaaaaatcataaaatcgcaatcaaaatcgatggattctaccaaaagaaaaataatgttaaacatatgttataaattgcatat 33593135  T
Q  333 agtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||| |  |||||||||||  ||||| ||||||||| |||||||||    
T  33593136 agtcattattgactcaaagtttcaagtctacaaaatacttatacataa 33593183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 20399994 - 20400096
Alignment:
Q  269 caatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaa 367  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||| ||| |||||||||||||    
T  20399994 caatcaaaatcgatggattccaccaaaacaaaaataatgataaatatatgttataaattgcatatagtcataaataactcaatgtttaaagtccacaaaa 20400093  T
Q  368 tac 370  Q
    |||    
T  20400094 tac 20400096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 380
Target Start/End: Original strand, 20432475 - 20432625
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgc 328  Q
    |||||||||||  ||| |||||   |||| ||||| |||||||||||||||| | |||| |||||||||||||||||  ||| ||| |||||||||||||    
T  20432475 aatcgatatagggtaggaaaatccaaaatcgtaaattcgcaatcaaaatcgatggattccaccaaaacaaaaataatactaa-tatatgttataaattgc 20432573  T
Q  329 atatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||||  ||||||| ||  ||||||||||||||| | |||||||    
T  20432574 atatagtcataaataactcaaaattttaagtccacaaaatacttttacataa 20432625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 7621882 - 7622000
Alignment:
Q  262 aaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactc-aaagttcaaagtc 360  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| || || ||||||  ||||     
T  7621882 aaaatcgtaatcaaactcga-gattctaccaaaacaaaaataatgataaatatatattataaattgcctatagtcataaatgattcaaaagtttcaagtt 7621980  T
Q  361 cacaaaatacatatacataa 380  Q
    || ||||||| |||||||||    
T  7621981 cataaaatacttatacataa 7622000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 18490538 - 18490657
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaag 358  Q
    ||||||||||||||||||| || | ||||||||||| ||||||||||| ||||||| |||||||||| | |||||||  ||||  ||||  |||  ||||    
T  18490538 gtaaaatcgcaatcaaaattgatggattctaccaaatcaaaaataatgataaatatatgttataaatcgtatatagtgctaaataactc--agtataaag 18490635  T
Q  359 tccacaaaatacatatacataa 380  Q
    ||||||||||||||||||||||    
T  18490636 tccacaaaatacatatacataa 18490657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 645470 - 645410
Alignment:
Q  293 aaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  645470 aaacaataataatgctaaatatatgttataaattgcatatagtcataaatgactcaaagtt 645410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 369
Target Start/End: Original strand, 5422563 - 5422665
Alignment:
Q  259 agtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaag 358  Q
    |||||||||||||||||||     |||| ||||||||||||||||||| ||||||| |||||||||||  ||||||||||||| ||| |||  || ||||    
T  5422563 agtaaaatcgcaatcaaaa-----gattttaccaaaacaaaaataatgctaaatatatgttataaattatatatagtcataaatgac-caa--tttaaag 5422654  T
Q  359 tccacaaaata 369  Q
    |||||||||||    
T  5422655 tccacaaaata 5422665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 24209647 - 24209739
Alignment:
Q  287 ctaccaaaacaaaaataatgttaaatatgtgttat--aaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatataca 377  Q
    |||||||||||||| |||| |||||||||||||||  | ||||||||||||||||||  ||||||| ||  |||| |||||||||| ||||||    
T  24209647 ctaccaaaacaaaattaatattaaatatgtgttatacatattgcatatagtcataaataactcaaaatttcaagttcacaaaatacttataca 24209739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 4841723 - 4841808
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||  |||  |||||| ||||||||||||  ||||||||||||    
T  4841723 aaatcgtaaaatcgcaatcaaaatcgatgtattttaccaaaacaaaaaatatgcaaaatatatgttataaattg--tatagtcataaa 4841808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 8285471 - 8285518
Alignment:
Q  328 catatagtcataaacgactcaaagttcaaagtccacaaaatacatata 375  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  8285471 catataatcataaatgactcaaaattcaaagtccacaaaatacatata 8285518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 3573794 - 3573851
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaaga-ttctaccaaaacaaaaataatgttaaa 311  Q
    |||| |||||||||||||||||||||| || || ||||||||||||||||||| ||||    
T  3573794 aaattgtaaaatcgcaatcaaaatcgatgagttttaccaaaacaaaaataatgctaaa 3573851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 8275434 - 8275510
Alignment:
Q  262 aaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcata 339  Q
    |||||||||||||||||| | |||  |||| |||||||||||||  | ||||| ||||||||||||||||| ||||||    
T  8275434 aaaatcgcaatcaaaatcaaggataatacccaaacaaaaataatact-aatatatgttataaattgcatattgtcata 8275510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 23898046 - 23897955
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||||| ||||||||||||| | ||| |||||||| ||||| |||  ||||||| |||||||||| | ||||||||||||| ||||    
T  23898046 aaattgtaaaatctcaatcaaaatcgatggattttaccaaaaaaaaaa-aatactaaatatatgttataaatggtatatagtcataaatgact 23897955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 26053190 - 26053276
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| ||||||||||||||||||||||  |||| |||||||| || ||||||  ||| ||| |||||||||| | |||||||||||||    
T  26053190 aaattgtaaaatcgcaatcaaaatcgatggattttaccaaaa-aataataatactaactatatgttataaatggtatatagtcataaa 26053276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 26073243 - 26073329
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| ||||||||||||||||||||||  |||| |||||||| || ||||||  ||| ||| |||||||||| | |||||||||||||    
T  26073243 aaattgtaaaatcgcaatcaaaatcgatggattttaccaaaa-aataataatactaactatatgttataaatggtatatagtcataaa 26073329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 7857188 - 7857103
Alignment:
Q  295 acaaaaataatgttaaatatgtgttataaatt-gcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||| ||||||| | ||||| ||| ||| || |||||||| |||||||||||  | ||||||||||||| |||||||||    
T  7857188 acaaaaataatgctaaatattt-ttatacatttgcaaatggtcataaatgactcaaagtttgaggtccacaaaatacttatacataa 7857103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 4596761 - 4596843
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaaca---aaaataatgttaaatatgtgttataaattgcatata 333  Q
    |||| ||||||||||||| |||||||  | ||||||||||||||   ||||||||| ||||||  |||||| |||||||||||    
T  4596761 aaatcgtaaaatcgcaataaaaatcggtggattctaccaaaacagcaaaaataatgctaaatacatgttattaattgcatata 4596843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 12002741 - 12002890
Alignment:
Q  230 aatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    ||||||||||| ||||||||||    | | |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  12002741 aatcgatatagaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaggattctaccaaaacaaaaataatgctaaatatatgttataaattgca 12002840  T
Q  330 tatagtcataaacgactcaaagttcaaagtccacaaaatacatatacata 379  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  12002841 tatagtcataaatgacttaaaattcaaagtccacaaaatacatatacata 12002890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 17197441 - 17197559
Alignment:
Q  261 taaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtc 360  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||    
T  17197441 taaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttacaaattgcatatagtcataaatgact-aaagttcaaagtc 17197539  T
Q  361 cacaaaatacatatacataa 380  Q
    |  |||||||||||||||||    
T  17197540 cgtaaaatacatatacataa 17197559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 24117694 - 24117606
Alignment:
Q  290 ccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    ||||||||||||||||| ||||||||| |||  ||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||    
T  24117694 ccaaaacaaaaataatgctaaatatgtttta--aattgcatatagtcataaatgactcaaaatttaaagttcacaaaatacatatacataa 24117606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 8773134 - 8773070
Alignment:
Q  316 tgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||||    
T  8773134 tgttataaattgcatagagtcataaatgacttaaagttcaaagtccgcaaaataaatatacataa 8773070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 8773484 - 8773432
Alignment:
Q  261 taaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaata 313  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  8773484 taaaatcgcaataaaaatcgaggattctaccaaaacaaaaataatgttaaata 8773432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 17055813 - 17055935
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| ||||||| ||||||||||| || | ||| ||||||||||||||||||| ||||||  || ||||||||  ||||||||||| | |||||||  ||    
T  17055813 aaattgtaaaattgcaatcaaaatggatggattttaccaaaacaaaaataatgctaaata--tgctataaattatatatagtcatatatgactcaa--tt 17055908  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     |||||||||||||||| |||||||||    
T  17055909 taaagtccacaaaatacttatacataa 17055935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 18891488 - 18891612
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaaga-ttctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| ||| ||||||||||||||| || || || ||||||||| ||||||||||||||||| | |||||||||  | ||||||||||| || ||  ||||    
T  18891488 aaatcgtagaatcgcaatcaaaattgatgaattttaccaaaacgaaaataatgttaaatatatattataaattatagatagtcataaatgattc--agtt 18891585  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     ||| |||||||||||| |||||||||    
T  18891586 taaattccacaaaatacttatacataa 18891612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 22789352 - 22789310
Alignment:
Q  338 taaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  22789352 taaatgactcaaagttcaaagtccacaaaatacatatacataa 22789310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 16434739 - 16434674
Alignment:
Q  262 aaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaa-taatgttaaatatgtgttataaat 325  Q
    |||||||||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||||||||    
T  16434739 aaaatcgcaatcaaaatcgatggattctaccaaaacaaaaattaatgataaatatatgttataaat 16434674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 18337175 - 18337293
Alignment:
Q  244 agcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaac 342  Q
    |||||||||  |||||||||||| ||||| |||||||| | ||| ||||||||||||||| ||| |        ||||||||||| |||||||||||||     
T  18337175 agcaaaattgaaaatagtaaaattgcaattaaaatcgatggattttaccaaaacaaaaatgatgat--------gttataaattgtatatagtcataaat 18337266  T
Q  343 gactcaaagttcaaagtccacaaaatac 370  Q
    ||||| ||||| ||| ||||||||||||    
T  18337267 gactc-aagtttaaaatccacaaaatac 18337293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 22789405 - 22789348
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaat 312  Q
    |||| ||||||| |||||||| || || || |||||||||||||||||||||||||||    
T  22789405 aaatcgtaaaattgcaatcaacatggatgaatctaccaaaacaaaaataatgttaaat 22789348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 25146542 - 25146623
Alignment:
Q  154 caaggttctcaaaatcagaattttacttcaggtagtaagggaaatgcaaaatcgtaaataataaaattgcgatcaaaatcga 235  Q
    ||||||| |||||||||| | |||||||||||| | |||||||  ||||||||| ||||  |||||| || |||||||||||    
T  25146542 caaggttgtcaaaatcaggactttacttcaggttgaaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcga 25146623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 21243074 - 21243126
Alignment:
Q  384 aaaggatgatggattgaaggaaagagccaatgtagttaggtttagttcatttt 436  Q
    ||||||| |||||||||||| ||||| |||| ||||||||| |||||||||||    
T  21243074 aaaggataatggattgaagggaagagacaatctagttaggtatagttcatttt 21243126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 16446680 - 16446746
Alignment:
Q  283 gattctaccaaaacaaaa-ataatgttaaatatgtgttataaattgcatatagtcataaacgactca 348  Q
    |||||||| ||||||||| |||||  ||||||| |||||||||||||||||| ||||| | ||||||    
T  16446680 gattctacaaaaacaaaatataatactaaatatatgttataaattgcatataatcatatatgactca 16446746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Complemental strand, 8773012 - 8772983
Alignment:
Q  420 taggtttagttcattttgaactagatgaac 449  Q
    ||||||||||||||||||||||||||||||    
T  8773012 taggtttagttcattttgaactagatgaac 8772983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 42179958 - 42180050
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||| | ||||||||||||| | ||| |||||||| ||| |||||  || |||| |||||||||| | ||||||||||||| ||||    
T  42179958 aaattgtaaaaccacaatcaaaatcgatggattttaccaaaaaaaatataatactatatatatgttataaatggtatatagtcataaatgact 42180050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 552 - 432
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  552 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgctaaatatatgatataaattgcatatagtcataaatgactcaaagttcaaagt 453  T
Q  360 ccacaaaatacatatacataa 380  Q
     |||||||| |||||||||||    
T  452 gcacaaaatgcatatacataa 432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 133027 - 133146
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||| | |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  133027 gtaaaatcgcaatcaaaatcaaggattctactaaaacaaaattaatgttaaatatatgttataaattgcatatagtcataaatgac-caaagttcaaagt 133125  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  133126 ccacaaaatacatatacataa 133146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 260 - 374
Target Start/End: Original strand, 8592311 - 8592425
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||| ||||    
T  8592311 gtaaaatcgcaatcaaaatcaaggattctaccaaaacaaaaataatgataaatatatgttataaattgcatatagtcataaatgacttaaagttcgaagt 8592410  T
Q  360 ccacaaaatacatat 374  Q
    |||||||||||||||    
T  8592411 ccacaaaatacatat 8592425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 22971026 - 22970906
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcat-aaacgactcaaagttcaaag 358  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||| |||||||||||    
T  22971026 gtaaaattgcaatcaaaatcgaggattctaccaaaacaaaaataatgttatatatatgttataaattgcatatagtcataaaatgact-aaagttcaaag 22970928  T
Q  359 tccacaaaatacatatacataa 380  Q
    ||||||||||||||||||||||    
T  22970927 tccacaaaatacatatacataa 22970906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 19348770 - 19348651
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | | ||||||||    
T  19348770 gtaaaatcgcaatcaaaatcgaggattataccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgact-ataattcaaagt 19348672  T
Q  360 ccacaaaatacatatacataa 380  Q
    ||||| |||||||||||||||    
T  19348671 ccacataatacatatacataa 19348651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 18014208 - 18014091
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||  ||||||||||| |||| ||||||||||||    
T  18014208 gtaaaatcgcaatcaaaatcgaggattctatcaaaacaaaaataatgctaaatatatgttataaattgc--atagtcataaatgact-aaagttcaaagt 18014112  T
Q  360 ccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||    
T  18014111 ccacaaaatacatatacataa 18014091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 260 - 372
Target Start/End: Complemental strand, 9169890 - 9169780
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||||||||||||    
T  9169890 gtaaaattgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatga--taaagttcaaagt 9169793  T
Q  360 ccacaaaatacat 372  Q
     ||||||||||||    
T  9169792 tcacaaaatacat 9169780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 21553804 - 21553888
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgt----taaatatgtgttataaattgcatatagtcataa 340  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    ||||||| |||||||||||||||||| ||||||    
T  21553804 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttgactaaatatatgttataaattgcatataatcataa 21553888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 10591861 - 10591789
Alignment:
Q  261 taaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatata 333  Q
    |||||| ||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  10591861 taaaattgcaatcaaaattgaggattctaccaaaacaaaaataatgctaaatatatgttataaattgcatata 10591789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 6861039 - 6861146
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| | ||| ||| ||||||||||||  |||||||||||| || || ||||| |||||    
T  6861039 taaaatcgcaatcaaaatcgatggattctaccaaaacaaaaataaagctaactatatgttataaattgtctatagtcataaatgattcgaagtttaaagt 6861138  T
Q  360 ccacaaaa 367  Q
     |||||||    
T  6861139 gcacaaaa 6861146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 3041440 - 3041375
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaat 325  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||    
T  3041440 gtaaaatcgcaattaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgctataaat 3041375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 8566181 - 8566244
Alignment:
Q  316 tgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacataa 380  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  8566181 tgttataaattgcatatagtcataaatgact-aaagttcgaagtccacaaaatacatatacataa 8566244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 27676671 - 27676548
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| |||||||| ||||||||||| | | ||| |||||||||||||| |||||||||||| |||||||||||  ||||||||||||| |||||   |||    
T  27676671 aaatcgtaaaatcacaatcaaaatcaatggattttaccaaaacaaaaacaatgttaaatatatgttataaattatatatagtcataaatgactc--ggtt 27676574  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     ||| |||||||||||| |||||||||    
T  27676573 taaa-tccacaaaatacttatacataa 27676548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Original strand, 8560369 - 8560437
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgca 329  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||||||| ||||||||||||||    
T  8560369 gtaaaatcgcaatcaaaatcgatgattctaccaaaa-taaaataatgctaaatatatgttataaattgca 8560437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 20767241 - 20767302
Alignment:
Q  388 gatgatggattgaaggaaagagccaatgtagttaggtttagttcattttgaactagatgaac 449  Q
    |||||||||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||||||    
T  20767241 gatgatggattgaaggaaggagacaatctagttaggtgtagttcaatttgaactagatgaac 20767302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 27055306 - 27055237
Alignment:
Q  293 aaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtcca 362  Q
    |||||||||||||| ||||||| |||| ||||||||||||| ||||||| || ||||| |||||||||||    
T  27055306 aaacaaaaataatgctaaatatatgttgtaaattgcatataatcataaatgaatcaaaattcaaagtcca 27055237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 23649448 - 23649366
Alignment:
Q  269 caatcaaaatcgaagattct-accaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaa 350  Q
    ||||||||||||| || | | |||||| ||||||||||||||||||| |||||||||||||||| |  |||||| ||||||||    
T  23649448 caatcaaaatcgatgagtttcaccaaagcaaaaataatgttaaatatatgttataaattgcataaaaacataaatgactcaaa 23649366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 449
Target Start/End: Original strand, 21554027 - 21554092
Alignment:
Q  384 aaaggatgatggattgaaggaaagagccaatgtagttaggtttagttcattttgaactagatgaac 449  Q
    |||||||||| |||||||||||  || |||| ||||||||||||||||||| | ||||||||||||    
T  21554027 aaaggatgattgattgaaggaagaaggcaatctagttaggtttagttcattctcaactagatgaac 21554092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 15806306 - 15806350
Alignment:
Q  283 gattctaccaaaacaaaaataatgttaaatatgtgttataaattg 327  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  15806306 gattctaccaaaacaaaaataatgctaaatatatgttataaattg 15806350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 448
Target Start/End: Original strand, 8566356 - 8566423
Alignment:
Q  384 aaaggatgatggattgaaggaaagagccaatgtagttaggttta---gttcattttgaactagatgaa 448  Q
    |||||||||| ||||||||||| ||| |||| ||||||||||||   |||| ||||||||||||||||    
T  8566356 aaaggatgatagattgaaggaaggaggcaatctagttaggtttagacgttctttttgaactagatgaa 8566423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 28135997 - 28135924
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattg 327  Q
    |||| ||||||| | |||||||||| | | ||| |||||||||||||||||||||||| || ||||||||||||    
T  28135997 aaattgtaaaataggaatcaaaatcaatatattttaccaaaacaaaaataatgttaaacatatgttataaattg 28135924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 26208312 - 26208228
Alignment:
Q  228 aaaatcgatatagcatagcaaaattataaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaa 311  Q
    |||||||| |||| |||||||||| | ||||  |||||||||||| ||||| ||  ||||||| ||||| |||||||||||||||    
T  26208312 aaaatcgacatagaatagcaaaatcaaaaattctaaaatcgcaattaaaattgatggattctatcaaaataaaaataatgttaaa 26208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 28746011 - 28745920
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||||||||||||||||||| | ||| |||| ||| |||| ||||  ||||||| |||||||||| | ||||||||||||| ||||    
T  28746011 aaattgtaaaatcgcaatcaaaatcgatggattttacccaaa-aaaattaatagtaaatatatgttataaatagtatatagtcataaatgact 28745920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 39428138 - 39428046
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  |||| |||| ||| |||| ||||  ||||||| |||||||| | | ||||||||||||| ||||    
T  39428138 aaattgtaaaatcgcaatcaaaatcgatggattttacccaaaaaaaattaatactaaatatatgttataagtagtatatagtcataaatgact 39428046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 42697077 - 42696991
Alignment:
Q  261 taaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| |||||||||||||||| | ||| |||||||| ||||| |||   |||||| |||||||||| | ||||||||||||| ||||    
T  42697077 taaactcgcaatcaaaatcgatggattttaccaaaaaaaaaaaaataccaaatatatgttataaatggtatatagtcataaatgact 42696991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 44922320 - 44922284
Alignment:
Q  260 gtaaaatcgcaatcaaaatcg-aagattctaccaaaa 295  Q
    ||||||||||||||||||||| |||||||||||||||    
T  44922320 gtaaaatcgcaatcaaaatcgaaagattctaccaaaa 44922284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 257 - 380
Target Start/End: Original strand, 5121 - 5243
Alignment:
Q  257 atagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaa 356  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||| ||||||||||||||| |||||||||| || |||||||||||    
T  5121 atagtaaaatcgcaatcaaaatcgaggattctaccaaatgaaaaataatgctaaatatatgttataaattgcatgtagtcataaatga-tcaaagttcaa 5219  T
Q  357 agtccacaaaatacatatacataa 380  Q
    |||||||||||||||| |||||||    
T  5220 agtccacaaaatacatgtacataa 5243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 38438 - 38563
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaa-----acaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttc 354  Q
    ||||||||||||| |||||||||||||||||||||     |||||||||||| ||||||| |||||||||||| ||||||||||||| |||| |||||||    
T  38438 gtaaaatcgcaattaaaatcgaagattctaccaaattaaaacaaaaataatgataaatatatgttataaattgtatatagtcataaaggacttaaagttc 38537  T
Q  355 aaagtccacaaaatacatatacataa 380  Q
    ||||||||||||||||||||||||||    
T  38538 aaagtccacaaaatacatatacataa 38563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 128664 - 128704
Alignment:
Q  337 ataaacgactcaaagttcaaagtccacaaaatacatataca 377  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  128664 ataaaggacttaaagttcaatgtccacaaaatacatataca 128704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 16752240 - 16752121
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||    
T  16752240 gtaacatcgcaatcaaaatcgaggatactactaaaacaaaaataatgttaaatatatgttataaattgcatatagtcataaatgagt-aaagttcaaagt 16752142  T
Q  360 ccacaaaatacatatacataa 380  Q
     || |||||||||||||||||    
T  16752141 tcataaaatacatatacataa 16752121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 40541732 - 40541852
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaa-ataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaag 358  Q
    |||||||||||||||||||| | ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |    
T  40541732 gtaaaatcgcaatcaaaatcaaggattcaaccaaaacaaaaaataatgttaaatatatgttataaattgcatatagtcataaatgact-aaagttcaagg 40541830  T
Q  359 tccacaaaatacatatacataa 380  Q
    | |||||||||| |||||||||    
T  40541831 tacacaaaatacgtatacataa 40541852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 26575017 - 26575143
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagtt 353  Q
    |||| ||||||| |||||||||||||| | ||||||||||||||||| | ||| |||| || |||| ||||||| ||||| ||||||| |||||||||||    
T  26575017 aaatcgtaaaatagcaatcaaaatcgatggattctaccaaaacaaaattgatgctaaaaatatgttttaaattgaatataatcataaatgactcaaagtt 26575116  T
Q  354 caaagtccacaaaatacatatacataa 380  Q
     |||||||||||||||| |||||||||    
T  26575117 taaagtccacaaaatacttatacataa 26575143  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 2040336 - 2040273
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataa 323  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2040336 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgttaaatatatgttataa 2040273  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 1018082 - 1018199
Alignment:
Q  262 aaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagtc 360  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||  ||||||||||||| ||| |  | || ||||||    
T  1018082 aaaagcgcaatcaaaatcgatagattctaccaaaataaaaataatgttaaatgtatgttataaattatatatagtcataaatgaccc--actttaaagtc 1018179  T
Q  361 cacaaaatacatatacataa 380  Q
     ||||||||| |||||||||    
T  1018180 aacaaaatacttatacataa 1018199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 15761255 - 15761332
Alignment:
Q  258 tagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatag 334  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  15761255 tagtaaaatcgcaatcaaaatcgatggattttaccaaaacaaaaataatgctaaatatatgttataaattgtatatag 15761332  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 3094143 - 3094228
Alignment:
Q  262 aaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    ||||||||||||||||| || ||||| ||| |||| ||||| |||  ||||||| |||||||||| | ||||||||||||| ||||    
T  3094143 aaaatcgcaatcaaaattgatagattttacaaaaaaaaaaaaaatactaaatatatgttataaatggtatatagtcataaatgact 3094228  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 8582278 - 8582205
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaaga-ttctaccaaaacaaaaataatgttaaatatgtgttataaattg 327  Q
    |||| |||||||  ||||||||||||| || || |||||||||| |||||||||||||||| ||||||| ||||    
T  8582278 aaatcgtaaaattacaatcaaaatcgatgaattttaccaaaacataaataatgttaaatatatgttatacattg 8582205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 24056470 - 24056523
Alignment:
Q  261 taaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaata 313  Q
    |||||||||||||| |||||| ||||| || |||||||||||||||||||||||    
T  24056470 taaaatcgcaatcataatcgatagattttatcaaaacaaaaataatgttaaata 24056523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 26879821 - 26879737
Alignment:
Q  244 agcaaaattataaatagtaaaatcgcaatcaaaatcga-agattctaccaaaac-aaaaataatgttaaatatgtgttataaatt 326  Q
    |||||||| | |||| ||||||||||||||||||| ||  |||||||| ||||| |||||| ||| ||||||| |||||||||||    
T  26879821 agcaaaatcaaaaatcgtaaaatcgcaatcaaaattgatggattctacaaaaacaaaaaatcatgctaaatatatgttataaatt 26879737  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 30240264 - 30240324
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatat 314  Q
    |||| ||||||||||||||||||| || | ||||||||||||||||||||||  |||||||    
T  30240264 aaatcgtaaaatcgcaatcaaaattgatggattctaccaaaacaaaaataatactaaatat 30240324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 11879835 - 11879749
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| ||||||||||| |||||||||| | ||| |||||||| || ||||||  ||||||| |||||||||| | |||||||||||||    
T  11879835 aaattgtaaaatcgcattcaaaatcgatggattttaccaaaa-aataataatactaaatatatgttataaatggtatatagtcataaa 11879749  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 11897251 - 11897165
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| ||||||||||| |||||||||| | ||| |||||||| || ||||||  ||||||| |||||||||| | |||||||||||||    
T  11897251 aaattgtaaaatcgcattcaaaatcgatggattttaccaaaa-aataataatactaaatatatgttataaatggtatatagtcataaa 11897165  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 29384206 - 29384297
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaa----taatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    |||| ||||||||||||||||||||||  |||| |||||||| |||||    ||||  ||||||| |||||||||| | |||||||||||||    
T  29384206 aaatcgtaaaatcgcaatcaaaatcgatggattttaccaaaaaaaaaaatactaatactaaatatatgttataaatggtatatagtcataaa 29384297  T

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Target: scaffold0163 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 257 - 380
Target Start/End: Complemental strand, 2997 - 2875
Alignment:
Q  257 atagtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaa 356  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||| ||||||| |||||||| |||||| |||||||||| || |||||||||||    
T  2997 atagtaaaatcgcaatcaaaatcgaggattctaccaaatgaaaaataatgctaaatatatgttataatttgcatgtagtcataaatga-tcaaagttcaa 2899  T
Q  357 agtccacaaaatacatatacataa 380  Q
    |||||| ||||||||| |||||||    
T  2898 agtccataaaatacatgtacataa 2875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 24602 - 24480
Alignment:
Q  261 taaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtca----taaacgactcaaagttcaa 356  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |    |||| ||||  ||||||||    
T  24602 taaaatcgcaatcaaaatcgaagattctaccaaaaaaaaaataatgttaaatatatgttataaattgcatatatttaacattaaatgact-gaagttcaa 24504  T
Q  357 agtccacaaaatacatatacataa 380  Q
    ||||||||||||||||||||||||    
T  24503 agtccacaaaatacatatacataa 24480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 8373 - 8260
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactcaaagttcaaagt 359  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||  ||||||| || ||||||||||||||||||||||| |||| ||||||||||||    
T  8373 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaatataatactaaatatatg-tataaattgcatatagtcataaatgact-aaagttcaaagt 8276  T
Q  360 ccacaaaatacatata 375  Q
     || ||||||||||||    
T  8275 acagaaaatacatata 8260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 348
Target Start/End: Original strand, 8858 - 8947
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgactca 348  Q
    |||||||||||||||||||||| | ||| |||||||||||| |||||| ||||||| |||||||| ||| ||||||||||||| ||||||    
T  8858 gtaaaatcgcaatcaaaatcgatggattttaccaaaacaaagataatgctaaatatatgttataagttgtatatagtcataaatgactca 8947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 14838 - 14887
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataatgtta 309  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14838 gtaaaatcgcaatcaaaatcgaggattctaccaaaacaaaaataatgtta 14887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 18630 - 18540
Alignment:
Q  244 agcaaaattataaatagtaaaatcgcaatcaaaatcgaag-attctaccaaaacaaaaataatgttaaatatgtgttataaattgcatata 333  Q
    |||||||| | |||| ||||||| ||||||||||| || | |||||| |||||||||||||||  ||||||| ||||||||||||||||||    
T  18630 agcaaaatcaaaaatcgtaaaattgcaatcaaaatagatggattctatcaaaacaaaaataatactaaatatatgttataaattgcatata 18540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 76220 - 76306
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaa-----acaaaaataatgttaaatatgtgttataaattgcatatagtcataaa 341  Q
    ||||||||| ||| |||||| | ||||||||||||     |||||||||||| ||||||| |||||||||||| |||||||||||||    
T  76220 gtaaaatcgaaattaaaatccaggattctaccaaattaaaacaaaaataatgataaatatatgttataaattgtatatagtcataaa 76306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2084 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 46 - 1
Alignment:
Q  260 gtaaaatcgcaatcaaaatcgaagattctaccaaaacaaaaataat 305  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||    
T  46 gtaaagtcgcaatcaaaatagaggattctaccaaaacaaaaataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 48679 - 48616
Alignment:
Q  316 tgttataaattgcatatagtcataaacgactcaaagttcaaagtccacaaaatacatatacata 379  Q
    |||||||||||| ||||| |||||| ||||||  |||| ||||||||||||| || ||||||||    
T  48679 tgttataaattgtatatactcataaccgactctcagtttaaagtccacaaaacacttatacata 48616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 8676 - 8587
Alignment:
Q  255 aaatagtaaaatcgcaatcaaaatcga-agattctaccaaaacaaaaataatgttaaatatgtgttataaattgcatatagtcataaacgact 346  Q
    |||| ||||||||||||||||||||||  |||| ||||||   |||||||||  ||||||| || ||||||| | ||||||||||||| ||||    
T  8676 aaattgtaaaatcgcaatcaaaatcgatggattttaccaa---aaaaataatactaaatatatggtataaatggtatatagtcataaatgact 8587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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