View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232R-Insertion-1 (Length: 1055)

Name: NF2232R-Insertion-1
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232R-Insertion-1
NF2232R-Insertion-1
[»] chr7 (6 HSPs)
chr7 (9-1008)||(46121258-46122241)
chr7 (431-468)||(835093-835130)
chr7 (431-468)||(1200273-1200310)
chr7 (432-468)||(47879759-47879795)
chr7 (432-468)||(47914837-47914873)
chr7 (432-467)||(40098533-40098568)
[»] chr3 (2 HSPs)
chr3 (429-468)||(46174788-46174827)
chr3 (519-569)||(6976140-6976190)
[»] chr4 (2 HSPs)
chr4 (432-468)||(7007926-7007962)
chr4 (520-569)||(9163620-9163669)
[»] chr2 (1 HSPs)
chr2 (432-467)||(34027520-34027555)
[»] chr1 (2 HSPs)
chr1 (519-574)||(28337359-28337414)
chr1 (432-465)||(47781317-47781350)
[»] chr5 (1 HSPs)
chr5 (768-801)||(1152179-1152212)


Alignment Details
Target: chr7 (Bit Score: 664; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 9 - 1008
Target Start/End: Original strand, 46121258 - 46122241
Alignment:
Q  9 ggatggaacaaccttgtttggtagctaaaggatgatgatattaaagataaggcagttgaatgcattttccaaactaagtcaggctaatgaatgtctagta 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121258 ggatggaacaaccttgtttggtagctcaaggatgatgatattaaagataaggcagttgaatgcattttccaaactaagtcaggctaatgaatgtctagta 46121357  T
Q  109 tcagtgcaactgcaagtgggtttattatattctaaaaggcttgctcatcttctctatttgagcattgtgaagaaatctcacaatgacacatttttgttgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121358 tcagtgcaactgcaagtgggtttattatattctaaaaggcttgctcatcttctctatttgagcattgtgaagaaatctcacaatgacacatttttgttgg 46121457  T
Q  209 atttgttggtgaatggtcagcttaatctgattttcagataaaatacatcacaataatacatagttgcttgtaaaatatactgttcatagaataaaatata 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121458 atttgttggtgaatggtcagcttaatctgattttcagataaaatacatcacaataatacatagttgcttgtaaaatatactgttcatagaataaaatata 46121557  T
Q  309 ttgttgcaaagnnnnnnnntattgatcgatatttttgtatcaaatgaatattctatagaatttattgttgatcaaaagtttcactacaagaatttgtaca 408  Q
    |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46121558 ttgttgcaaag-aaaaaaatattgatcgatatttttgtatcaaatgaatattctatagaatttattgttgatcaaaagtttcactacaggaatttgtaca 46121656  T
Q  409 attatcaatgtaactttttcggagtgtatttgattaggattttaaaagataatttttgttgnnnnnnngtattgttgattttaaaagattttaatgacat 508  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||    
T  46121657 attattaatgtaactttttcggagtgtattggattaggattttaaaagataatttttgttgaaaaaaagtattgtggattttaaaagattttaatgacat 46121756  T
Q  509 tttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaacatgattttgtggatt--taagatttgaaaggtc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||||| | |||||    
T  46121757 tttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttaaagaacttgattttgtggatttataagatttcagaggtc 46121856  T
Q  607 tatgaagtttaacattctcattcataatattcttcttcatacacactcttttatgtgnnnnnnnnnnnnnnnnnngttgagagaggggggcaaaatctta 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||| |||||||||||||||    
T  46121857 tatgaagtttaacattctcattcataatattcttcttcatacacactcttttatgtg---tttttttttttttttgttgagaga-gggggcaaaatctta 46121952  T
Q  707 aagaaataacaatccataaaaatctaatgttttcttgctaaaatttaaatttaagattccacaaaatccaatttgttaaacaatccctcgaaattagata 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46121953 aagaaataacaatccataaaaatctaatgttttcttgctaaaattttactttaagatttcacaaaatccaatttgttaaacaatccctcgaaattagata 46122052  T
Q  807 tannnnnnnnatcaacacaactttttttaaaatacaaatagtcttaattgaatnnnnnnnnnnnnnnnnnnnnnntaagct-tttaaatcctgtaaatca 905  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||                      |||||| ||||||||||||||||||    
T  46122053 tattttttttatcaacacaactttttttaaaatacaaatagtcttaattgaat--------------acaaaaaataagctttttaaatcctgtaaatca 46122138  T
Q  906 cccaataccatcctccg-ttttaaaatttgtacctatgcatttcccgttaa--ccatccatcccacagagtgtgtctactt-aaacgtcatctatctact 1001  Q
    || ||| |||||| ||| |||||||||||||||||||||||||||||| ||  ||||||||||||||||    |||||||| ||||||||||||||||||    
T  46122139 ccaaattccatcccccgtttttaaaatttgtacctatgcatttcccgtcaaacccatccatcccacaga----gtctacttaaaacgtcatctatctact 46122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 835130 - 835093
Alignment:
Q  431 agtgtatttgattaggattttaaaagataatttttgtt 468  Q
    |||||||| |||||||||||||||||||||||||||||    
T  835130 agtgtattggattaggattttaaaagataatttttgtt 835093  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Complemental strand, 1200310 - 1200273
Alignment:
Q  431 agtgtatttgattaggattttaaaagataatttttgtt 468  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1200310 agtgtattggattaggattttaaaagataatttttgtt 1200273  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 47879795 - 47879759
Alignment:
Q  432 gtgtatttgattaggattttaaaagataatttttgtt 468  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47879795 gtgtattggattaggattttaaaagataatttttgtt 47879759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 47914873 - 47914837
Alignment:
Q  432 gtgtatttgattaggattttaaaagataatttttgtt 468  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47914873 gtgtattggattaggattttaaaagataatttttgtt 47914837  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 40098568 - 40098533
Alignment:
Q  432 gtgtatttgattaggattttaaaagataatttttgt 467  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40098568 gtgtatttgattaggattttaaaagattatttttgt 40098533  T

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Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 429 - 468
Target Start/End: Complemental strand, 46174827 - 46174788
Alignment:
Q  429 ggagtgtatttgattaggattttaaaagataatttttgtt 468  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46174827 ggagtgtattcgattaggattttaaaagataatttttgtt 46174788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 519 - 569
Target Start/End: Complemental strand, 6976190 - 6976140
Alignment:
Q  519 ctatcaatatttacaatttggattttaaaggattcatatcataagatttta 569  Q
    ||||||| ||||||||||||||||| || ||||| | ||||||||||||||    
T  6976190 ctatcaagatttacaatttggatttcaatggatttacatcataagatttta 6976140  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 7007962 - 7007926
Alignment:
Q  432 gtgtatttgattaggattttaaaagataatttttgtt 468  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7007962 gtgtattggattaggattttaaaagataatttttgtt 7007926  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 9163669 - 9163620
Alignment:
Q  520 tatcaatatttacaatttggattttaaaggattcatatcataagatttta 569  Q
    |||||| ||||||||||||||||| || ||||| ||| ||||||||||||    
T  9163669 tatcaagatttacaatttggatttcaatggatttataccataagatttta 9163620  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 34027520 - 34027555
Alignment:
Q  432 gtgtatttgattaggattttaaaagataatttttgt 467  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34027520 gtgtatttgattaggattttaaaagattatttttgt 34027555  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 574
Target Start/End: Original strand, 28337359 - 28337414
Alignment:
Q  519 ctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaa 574  Q
    ||||||| ||||| |||||| |||| ||| |||| |||||||||||||||||||||    
T  28337359 ctatcaagatttaaaatttgaatttgaaatgatttatatcataagattttatagaa 28337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 47781350 - 47781317
Alignment:
Q  432 gtgtatttgattaggattttaaaagataattttt 465  Q
    ||||||| ||||||||||||||||||||||||||    
T  47781350 gtgtattggattaggattttaaaagataattttt 47781317  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 768 - 801
Target Start/End: Original strand, 1152179 - 1152212
Alignment:
Q  768 caaaatccaatttgttaaacaatccctcgaaatt 801  Q
    ||||||||||||| ||||||||||||||||||||    
T  1152179 caaaatccaatttattaaacaatccctcgaaatt 1152212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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