View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2232R-Insertion-10 (Length: 259)

Name: NF2232R-Insertion-10
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2232R-Insertion-10
NF2232R-Insertion-10
[»] chr1 (2 HSPs)
chr1 (8-259)||(48593607-48593866)
chr1 (8-259)||(48598218-48598477)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 48593607 - 48593866
Alignment:
Q  8 agattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatctt 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  48593607 agattgaacccccttacatttcttcaactttagtaaaagggaatttgtgataaa----gtagtgcaattgttgtttatgtctttctctattcacaatctt 48593702  T
Q  108 aagcccttgctctcctatttctctttacttcttctc------------tcacacacctaaatctccttttatctatcttttctggctttctatctcattt 195  Q
    ||||||||||||| ||||||||||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48593703 aagcccttgctcttctatttctctttacttcttctctcacatcattgatcacacacctaaatctccttttatctatcttttttggctttctatctcattt 48593802  T
Q  196 ccacatactcttcttataccacactggatatatgaaagtgtattctaattcctttagcatttca 259  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48593803 ccatatactcttcttataccacactggatatatgaaagtgtattttaattcctttagcatttca 48593866  T

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Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 48598218 - 48598477
Alignment:
Q  8 agattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatctt 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  48598218 agattgaacccccttacatttcttcaactttagtaaaagggaatttgtgataaa----gtagtgcaattgttgtttatgtctttctctattcacaatctt 48598313  T
Q  108 aagcccttgctctcctatttctctttacttcttctc------------tcacacacctaaatctccttttatctatcttttctggctttctatctcattt 195  Q
    ||||||||||||| ||||||||||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48598314 aagcccttgctcttctatttctctttacttcttctctcacatcattgatcacacacctaaatctccttttatctatcttttttggctttctatctcattt 48598413  T
Q  196 ccacatactcttcttataccacactggatatatgaaagtgtattctaattcctttagcatttca 259  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48598414 ccatatactcttcttataccacactggatatatgaaagtgtattttaattcctttagcatttca 48598477  T

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