View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232R-Insertion-11 (Length: 222)
Name: NF2232R-Insertion-11
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 42759037 - 42759150
Alignment:
| Q |
43 |
taaccttctatatttccagattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggtagttattggtgtttttagtttttat |
142 |
Q |
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| T |
42759037 |
taaccttctatattttcagattagcagtgtttcatataaacgcaacatttctttaatagagtgttgtaaagaggcagttattgttgtttttagtttttat |
42759136 |
T |
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| Q |
143 |
tcctctgcttcaac |
156 |
Q |
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|||||| ||||||| |
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| T |
42759137 |
tcctctacttcaac |
42759150 |
T |
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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 42759283 - 42759342
Alignment:
| Q |
153 |
caacttgttatggttttccatactacaatagatgtgtagctgttcattaaattgattctt |
212 |
Q |
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| T |
42759283 |
caacttgttatggttttccatactataatagatgtgtagctgttcattaaattgattctt |
42759342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 1402732 - 1402678
Alignment:
| Q |
153 |
caacttgttatggttttccatactacaatagatgtgtagctgttcattaaattga |
207 |
Q |
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| T |
1402732 |
caacttgttatggttttccatattataatagatgtgtagttgttcattaaattga |
1402678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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