View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232R-Insertion-12 (Length: 221)
Name: NF2232R-Insertion-12
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 9105513 - 9105727
Alignment:
| Q |
7 |
cactcacgagtgtgttgactctattttcggtaggctgatcattcatctcactttcgataggctgcatattcttctctttgtgttgaggagctgatgaatt |
106 |
Q |
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| T |
9105513 |
cactcacgagtgtgttgactctattttcggtaggctgatcgttcatctcactttcggtaggctgcatattcttctctttgtgttgaggagctgatgaatt |
9105612 |
T |
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| Q |
107 |
acgaatgactttgctcaacctctttttgacaggttgagcattcttctcgctttgttgaggagttgattgatcaccaatttgtctattagtcactctcttt |
206 |
Q |
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| T |
9105613 |
acgaatgactttgctcaacctctttttgacaggttgagcattcttctcgctttgttgaggagctgattgatcaccaatttgtctattattcactctcttt |
9105712 |
T |
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| Q |
207 |
ttggcaggttgagta |
221 |
Q |
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| T |
9105713 |
ttggcaggttgagta |
9105727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 9105707 - 9105797
Alignment:
| Q |
126 |
ctctttttgacaggttgagcattcttctcgctttgttgaggagttgattgatcaccaatttgtctattagtcactctctttttggcaggttgag |
219 |
Q |
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| T |
9105707 |
ctctttttggcaggttgagtattcttctctccgtgttgaggagttggtgaatcaccaatttgtctat---tcaccctctttttggcaggctgag |
9105797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 9105778 - 9105834
Alignment:
| Q |
125 |
cctctttttgacaggttgagcattcttctcgctttgttgaggagttgattgatcacc |
181 |
Q |
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| T |
9105778 |
cctctttttggcaggctgagcattcttatcgctttgtggaggagctgatggatcacc |
9105834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 41076252 - 41076135
Alignment:
| Q |
64 |
taggctgcatattcttctctttgtgttgaggagctgatgaattacgaatgactttgctcaacctctttttgacaggttgagcattcttctcgctttgttg |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||| | | | | |||||||||| || |||||||| |||| ||||||||| | |
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| T |
41076252 |
taggctgcatattcttctctttgtgttgaggagctgatgaatcaccaatttgtctattgaccctctttttggcaagttgagcaatcttatcgctttgtgg |
41076153 |
T |
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| Q |
164 |
aggagttgattgatcacc |
181 |
Q |
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| T |
41076152 |
aggagctgatggatcacc |
41076135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 22819905 - 22819971
Alignment:
| Q |
63 |
ataggctgcatattcttctctttgtgttgaggagctgatgaattacgaatgactttgctcaacctctt |
130 |
Q |
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| T |
22819905 |
atagtctgcatattcttctctttatgttgaggagctggtgaattaccaat-actttactcaccctctt |
22819971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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