View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232R-Insertion-2 (Length: 1019)
Name: NF2232R-Insertion-2
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 67 - 572
Target Start/End: Complemental strand, 51309762 - 51309274
Alignment:
| Q |
67 |
tagtacgtatttgggtgaggattgtacgaatttacgaatgagattttcggtattggtgttggtgtttgtggttgagagttttgtgaggaatcgttgccct |
166 |
Q |
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| T |
51309762 |
tagtacggatttgggtgaggattgtacgaatttacgaatgagattttcggtattggtgttggtg------gttgagagttttgtgaggaatcgttgccct |
51309669 |
T |
|
| Q |
167 |
tgtttcgttagagtgcaacgaattctgttgnnnnnnnnaagacgaagctgggtttggagttgaggaggagttagaggacattgttgaaatatcaccgtca |
266 |
Q |
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| T |
51309668 |
tgtttcgttagagtgcaacgaattgtgttgttttttttaagacgaagctgggtttggagttgaggaggaggaagaggacattgttgaaatctcagcgtca |
51309569 |
T |
|
| Q |
267 |
tcctctcagctctaatgtttgtttcttccttctttttcttccatgcgccatgatataataagtaatgattattagtttagaagtacttacttgactgcca |
366 |
Q |
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| T |
51309568 |
tcctctcagctctaatgttt----cttccttctttttcttccatgcgccatgatataacaagtaatgattattagtttagaa-------ctcaaccggta |
51309480 |
T |
|
| Q |
367 |
aatgttcgaaattgttaggtcggatgtcgtaaatcaagttcgaattcgagacctcacagtttaatgaactatcacttcatctaagacaaaaagaaaaagt |
466 |
Q |
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| T |
51309479 |
aatgcccgaaattacaaggtcggatgtcgtgaatcgagttcgaattcgagacctcgcagtttaatgaactaccacttcatctaagacaaaaa-aaaaagt |
51309381 |
T |
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| Q |
467 |
aatgattattacgtcnnnnnnncaaaaatatttatggagttttttattctataatctg-aacagagttataatgtgttttgattatagaatctgaaatat |
565 |
Q |
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| T |
51309380 |
aatgattattacgtctttttttcaaaaatatttactgagttttttattctataatttgaaacaaagttagaatgtgttttgtttatagaatctgaaatat |
51309281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 581 - 813
Target Start/End: Complemental strand, 1123519 - 1123283
Alignment:
| Q |
581 |
tggacatcggacgggttcaggcccgaatgtccactccagcccaactcgcgggtgagaatactgaacccatctctgccc-tgttttgatgcggtcttcacg |
679 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1123519 |
tggacatcgggcgggttcgggcccgaatgtccactccagcccaacccgcgggtgagaatactgaacccatctctgcccatgttttgatgcggtcttcacg |
1123420 |
T |
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| Q |
680 |
ggttacgggtcaatcgggtaacgggtttttcgggcggattgattcgggtgatgagttcaaa---catccagaaaaattccaaaagcaaagcaaaacgaga |
776 |
Q |
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| T |
1123419 |
ggttacgggtcaatcgggtaacgggtttttcgggcggattgattcgggtggtgagttcaaacatcatccagaaaaattccaaaagcaaagcaaaacgaga |
1123320 |
T |
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| Q |
777 |
gaagaatccatatctgaatctcaatatgttaaccagc |
813 |
Q |
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| T |
1123319 |
gaagaatccagatctgaatctcaatatattaaccagc |
1123283 |
T |
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