View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2232R-Insertion-3 (Length: 957)
Name: NF2232R-Insertion-3
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 686; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 253 - 957
Target Start/End: Complemental strand, 47688711 - 47688006
Alignment:
| Q |
253 |
aattaccgctactaagttcatttaataatatgatttcattgagtactcaattgtattccttcactcagtatatcattgaataa-tatgatttcattttca |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47688711 |
aattaccgctactaagttcatttaataatatgatttcattgagtactcaattgtattccttcactcagtatatcattgaataaatatgatttcattttca |
47688612 |
T |
|
| Q |
352 |
aattctctcaattactcaacatggtttcagagcgggattttccggcgttgcttcctcaacaatatgaatccgtatggagagaggcatagattaggcaaag |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688611 |
aattctctcaattactcaacatggtttcagagcgggattttcccgcgttgcttcctcaacaatatgaatccgtatggagagaggcatagattaggcaaag |
47688512 |
T |
|
| Q |
452 |
caaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaacaaggattatctaattaagaagca |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688511 |
caaaagctaacattcatttgatgcaagttaattcaaatctcaccaaatagtttaccttaattaagcacaagataaacaaggattatctaattaagaagca |
47688412 |
T |
|
| Q |
552 |
gaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcataaaagttaaaatgcatccgaat |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688411 |
gaattaagtttttcacctagctagctaattgatcttgattaatagttctcctagctaactaattaactaattgatcataaaagttaaaatgcatccgaat |
47688312 |
T |
|
| Q |
652 |
tggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaaaggttttcgccgccatc |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688311 |
tggatcaagataactaattaaaccaaattcgatctgaacagctaattgagtactagttcccatcatcagaagatttgaggtaaaggttttcgccgccatc |
47688212 |
T |
|
| Q |
752 |
accaccgccgcctcgaccttgatcagatgaagaattcatcccaatctcttgttgcttgccactacctccaataagacttctgtgcaaaccctctcctcca |
851 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688211 |
accaccgccgcctcgaccttgatcagatgaagaactcatcccaatctcttgttgcttgccactacctccaataagacttctgtgcaaaccctctcctcca |
47688112 |
T |
|
| Q |
852 |
ccgcggatgaagtcaggaaacccaccaccagaacccaatgttgagctactacctcctcccacgttcatattgctacaggcttcgctttgcatcatgtgta |
951 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688111 |
ccgcggatgaagtcaggaaacccaccaccagaacccaatgttgagctactacttcctcccacgttcatattgctacaggcttcgctttgcatcatgtgta |
47688012 |
T |
|
| Q |
952 |
gtcctg |
957 |
Q |
| |
|
|||||| |
|
|
| T |
47688011 |
gtcctg |
47688006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 47688995 - 47688752
Alignment:
| Q |
9 |
ctgagttcagatcattagttcaacacctcacaggtaaaaactccaacaatttcactcatcaaagcattcctctgcatatgcacaatgatcatttggacca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688995 |
ctgagttcagatcattagttcaacacctcacaggtaaaaactccaacaatttcactcatcaaagcattcctctgcatatgcacaatgatcatttggacca |
47688896 |
T |
|
| Q |
109 |
cccaccactcgcaattgcagctacatcggctgaagatgtgagcaccacatattacaacagatcaatggatatggattctttcgagttcgatgtagtagat |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||| |
|
|
| T |
47688895 |
cccaccactcacaattgcagctacatcggctgaagatgtgagcaccacatattacaacagatcaat------ggattctgtcaagttcgatgtaatagat |
47688802 |
T |
|
| Q |
209 |
tacttttggaaagaagttgctatttgctttccactgacatatgcaattac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688801 |
tacttttggaaagaagttgctatttgctttccactgacatatgcaattac |
47688752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 703 - 755
Target Start/End: Original strand, 35836306 - 35836358
Alignment:
| Q |
703 |
actagttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
755 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
35836306 |
actaattcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
35836358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University