View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2232R-Insertion-4 (Length: 891)
Name: NF2232R-Insertion-4
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 838; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 9 - 891
Target Start/End: Complemental strand, 21446205 - 21445327
Alignment:
| Q |
9 |
ctatcttgatgcatctccatatctatcctcttttcttgttattttaaattttcttatttatttagctcaaggaagaattctcgattaacgtgtcttttgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21446205 |
ctatcttgatgcatctccatatctatcctcttttcttgttattttaaattttcttatttatttagctcaaggaagaattctcgattaatatgtcttttgt |
21446106 |
T |
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| Q |
109 |
tcttgttcttgtttgtgtagctcaaagaagagttctcggtgcatggtagcgatgaagagattgatgatcaactagatgtgggtagtgatgaggatttcag |
208 |
Q |
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| T |
21446105 |
tcttgttcttgtttgtgtagctcaaagaagagttctcggtgcatggtagcgatgaagagattgatgatcaactagatgtgggtagtgatgaggatttcag |
21446006 |
T |
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| Q |
209 |
tgacgacagtgacagacatgtagacgatgaggtagatttttggttttatgttggttaaattatttacctagatgaaatgtctgtatgtatgtatgcgatg |
308 |
Q |
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| T |
21446005 |
tgacgacagtgacagacatgtagacgatgaggtagatttttggttttatgttggttaaattgtttacctagatgaaatgtctgtatgtatg----cgatg |
21445910 |
T |
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| Q |
309 |
aaatgtctgtatcgatgtgataaaacttgccggatagaagaatttcaacttccatctttgggtttcctttcctattcctcttgctagcaatggtaatagg |
408 |
Q |
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| T |
21445909 |
aaatgtctgtatcgatgtgataaaacttgccggatagaagaatttcaacttccatctttgggtttcctttcctattcctcttgctagcaatggtaatagg |
21445810 |
T |
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| Q |
409 |
aattgacaattgacaatgttctcttttcccgtgacgttgggttatcaattgggaatgaatcgatgccaagctaagttttgagtagtacctatgaagcacc |
508 |
Q |
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| T |
21445809 |
aagtgacaattgacaatgttctcttttcccgtgacgttgggttatcaattgggaatgaattgatgccaagctaagttttgagtagtacctatgaagcacc |
21445710 |
T |
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| Q |
509 |
acagactctagacaacactgataataatttgagaatatgaaatcaactcaatgtaaactagagtatcggtggtgtgtcggtcggtgtcagacatttgaca |
608 |
Q |
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| T |
21445709 |
acagactctagacaacactgataataatttgagaatatgaaatcaactcaatgtaaactagagtatcggtggtgtgtcggtcggtgtcagacatttgaca |
21445610 |
T |
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| Q |
609 |
cattttcaatctgaaagtatcgatgctacacatagtagtacttttaactaattttgagtccttttgtattttgcgctccaggttggatctgtagacgagg |
708 |
Q |
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| T |
21445609 |
cattttcaatctgaaagtatcgatgctacacatagtagtacttttaactaattttgagtccttttgtattttgcgctccaggttggatctgtagacgagg |
21445510 |
T |
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| Q |
709 |
aatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatgactatgagttaaagaccaagct |
808 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
21445509 |
aatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatgattacgagttaaagaccaagct |
21445410 |
T |
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| Q |
809 |
tgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagc |
891 |
Q |
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| T |
21445409 |
tgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagc |
21445327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 702 - 787
Target Start/End: Original strand, 40686811 - 40686896
Alignment:
| Q |
702 |
gacgaggaatcaacgaagtctgatgaagagtacgacgatcttgcaatggaagatgtgttggaaaatggttattggacagatgatga |
787 |
Q |
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| T |
40686811 |
gacgaggaatcaaccaagtctgatgaagagtatgatgatttggcaatgcaagatgtgcctgaaagtggatattggtcagatgatga |
40686896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 40686419 - 40686523
Alignment:
| Q |
126 |
tagctcaaagaagagttctcggtgcatggtagcgatgaag---agattgatgatcaactagatgtgggtagtgatgaggatttcagtgacgacagtgaca |
222 |
Q |
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| T |
40686419 |
tagctcaaagaggatctttcagtgcatggtagtgatgaagaagagattgacgatcaattagaggcgggcagtgatgatgatttcagtgacgatggtgaca |
40686518 |
T |
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| Q |
223 |
gacat |
227 |
Q |
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|||| |
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| T |
40686519 |
aacat |
40686523 |
T |
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