View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2232R-Insertion-5 (Length: 825)
Name: NF2232R-Insertion-5
Description: NF2232R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2232R-Insertion-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 245 - 647
Target Start/End: Original strand, 29116101 - 29116504
Alignment:
| Q |
245 |
gaatcttgtgctacttcataacttgctt-tccatgtataattgtttgtgtaattttctgcatgcgaagattggtataatggagcagtttcccaacctcag |
343 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29116101 |
gaatcttgtgctacttgataacttgcttctccatgtataattgtgtgtgtaattttctgcatgtgaagattggtacaatggagcagtttcccaacctcag |
29116200 |
T |
|
| Q |
344 |
ttggtattagcagatcttattgaagttttctttccaactggaaattacaccatgacttatttcaggaacctttttaaggtatgctttcattgctaaatac |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29116201 |
ttggtattagcagatcttattgaagttttctttccaactggaaattacaccatgacttatttcaggaacctttttaaggtatgctttcattgctaaatac |
29116300 |
T |
|
| Q |
444 |
caaaggaattcaaatannnnnnnnnnnncttgtatttccaacttctcaagttgttcatatcatcttgcagggagaaacatctataaatattggtcctgaa |
543 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29116301 |
caaaggaattcaaatattttttatttttcttgtatttccaacttctcaagttgttcatatcatcttgcagggagaaacacctataaatattggtcctgaa |
29116400 |
T |
|
| Q |
544 |
atgtgtgacagggacacttcctcaacattggatcctaccatagtaccatgtggatgatttatctttcaagttctaaattaggtagattgttattaaaact |
643 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29116401 |
atgtgtgacagggacacatcctcaacattggatcctaccatagtaccatgtggatgatttatctttcaagttctaaattaggtagattgttattaaaact |
29116500 |
T |
|
| Q |
644 |
attc |
647 |
Q |
| |
|
|||| |
|
|
| T |
29116501 |
attc |
29116504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 702 - 824
Target Start/End: Original strand, 29116558 - 29116680
Alignment:
| Q |
702 |
acgatcgatgagtttctttaggtttattcggtaatctttaagtgaaaagtttaagtgaaaagccttcatgatagttaggagttcttttcatatgatttgc |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29116558 |
acgatcgatgagtttctttaggtttattcggtaatctttaagtgaaaagtttaagtgaaaagccttcatgatagtttggagttcttttcatatgatttgc |
29116657 |
T |
|
| Q |
802 |
acttggtagttgacagaacaata |
824 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
29116658 |
acttggtagttgacagaacaata |
29116680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 29115928 - 29116092
Alignment:
| Q |
8 |
atggagatatgacaaacggattcaaagttcgtctcttggtaagtcttaa-atccaagcacactagctttatatgattttctagtgaaatatgttcaatat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||||||| | |||| |
|
|
| T |
29115928 |
atggagatatgacaaacggattcaaagttcgtctcttggtaagtctcaacatccaagcacactagctctttatgattttctagtgaaatatgcttgatat |
29116027 |
T |
|
| Q |
107 |
ttgtttcatactttttactatggaatttgatactttcatgaccaggaaaaaagaaagaatttcaa |
171 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
29116028 |
ttgtttcagactttttactaaggaatttgatgctttcatgaccaagataaaagaaagaatttcaa |
29116092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University